co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006903: vesicle targeting	0.00E+00
2	GO:0017186: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	0.00E+00
3	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
4	GO:0046109: uridine biosynthetic process	0.00E+00
5	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
6	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
7	GO:0000188: inactivation of MAPK activity	0.00E+00
8	GO:0006886: intracellular protein transport	2.86E-06
9	GO:0006612: protein targeting to membrane	3.65E-06
10	GO:0000911: cytokinesis by cell plate formation	2.53E-05
11	GO:0006102: isocitrate metabolic process	4.50E-05
12	GO:0048482: plant ovule morphogenesis	8.61E-05
13	GO:0019628: urate catabolic process	8.61E-05
14	GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	8.61E-05
15	GO:0043547: positive regulation of GTPase activity	8.61E-05
16	GO:0051245: negative regulation of cellular defense response	8.61E-05
17	GO:0042539: hypotonic salinity response	8.61E-05
18	GO:0006144: purine nucleobase metabolic process	8.61E-05
19	GO:0009968: negative regulation of signal transduction	8.61E-05
20	GO:0046167: glycerol-3-phosphate biosynthetic process	8.61E-05
21	GO:0050684: regulation of mRNA processing	2.04E-04
22	GO:0006641: triglyceride metabolic process	2.04E-04
23	GO:0051645: Golgi localization	2.04E-04
24	GO:0007584: response to nutrient	2.04E-04
25	GO:0031349: positive regulation of defense response	2.04E-04
26	GO:0060151: peroxisome localization	2.04E-04
27	GO:2000034: regulation of seed maturation	3.42E-04
28	GO:0051646: mitochondrion localization	3.42E-04
29	GO:0002230: positive regulation of defense response to virus by host	3.42E-04
30	GO:0019563: glycerol catabolic process	3.42E-04
31	GO:0032784: regulation of DNA-templated transcription, elongation	3.42E-04
32	GO:0090436: leaf pavement cell development	3.42E-04
33	GO:0046621: negative regulation of organ growth	3.42E-04
34	GO:0072334: UDP-galactose transmembrane transport	4.92E-04
35	GO:0019048: modulation by virus of host morphology or physiology	4.92E-04
36	GO:0006072: glycerol-3-phosphate metabolic process	4.92E-04
37	GO:0009052: pentose-phosphate shunt, non-oxidative branch	4.92E-04
38	GO:0006893: Golgi to plasma membrane transport	4.92E-04
39	GO:1902290: positive regulation of defense response to oomycetes	4.92E-04
40	GO:0006882: cellular zinc ion homeostasis	4.92E-04
41	GO:0061025: membrane fusion	5.62E-04
42	GO:0010363: regulation of plant-type hypersensitive response	6.55E-04
43	GO:0007112: male meiosis cytokinesis	6.55E-04
44	GO:0010107: potassium ion import	6.55E-04
45	GO:0010188: response to microbial phytotoxin	6.55E-04
46	GO:0007264: small GTPase mediated signal transduction	6.84E-04
47	GO:0018344: protein geranylgeranylation	8.29E-04
48	GO:0010225: response to UV-C	8.29E-04
49	GO:0030041: actin filament polymerization	8.29E-04
50	GO:0048317: seed morphogenesis	1.01E-03
51	GO:0006014: D-ribose metabolic process	1.01E-03
52	GO:0009612: response to mechanical stimulus	1.20E-03
53	GO:0033962: cytoplasmic mRNA processing body assembly	1.20E-03
54	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.20E-03
55	GO:1900057: positive regulation of leaf senescence	1.41E-03
56	GO:0006401: RNA catabolic process	1.41E-03
57	GO:0009867: jasmonic acid mediated signaling pathway	1.48E-03
58	GO:0006099: tricarboxylic acid cycle	1.54E-03
59	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.63E-03
60	GO:0006875: cellular metal ion homeostasis	1.63E-03
61	GO:0032875: regulation of DNA endoreduplication	1.63E-03
62	GO:0006897: endocytosis	1.75E-03
63	GO:0006887: exocytosis	1.75E-03
64	GO:0006972: hyperosmotic response	1.86E-03
65	GO:0060321: acceptance of pollen	1.86E-03
66	GO:0000209: protein polyubiquitination	1.97E-03
67	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.10E-03
68	GO:1900426: positive regulation of defense response to bacterium	2.35E-03
69	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.35E-03
70	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.35E-03
71	GO:0071577: zinc II ion transmembrane transport	2.35E-03
72	GO:0043069: negative regulation of programmed cell death	2.61E-03
73	GO:0006468: protein phosphorylation	2.86E-03
74	GO:0006913: nucleocytoplasmic transport	2.87E-03
75	GO:0030148: sphingolipid biosynthetic process	2.87E-03
76	GO:0030048: actin filament-based movement	3.43E-03
77	GO:0055046: microgametogenesis	3.43E-03
78	GO:0048467: gynoecium development	3.73E-03
79	GO:0002237: response to molecule of bacterial origin	3.73E-03
80	GO:0009742: brassinosteroid mediated signaling pathway	3.81E-03
81	GO:0009969: xyloglucan biosynthetic process	4.03E-03
82	GO:0007031: peroxisome organization	4.03E-03
83	GO:0010030: positive regulation of seed germination	4.03E-03
84	GO:0070588: calcium ion transmembrane transport	4.03E-03
85	GO:0006952: defense response	4.62E-03
86	GO:0009863: salicylic acid mediated signaling pathway	4.65E-03
87	GO:0043622: cortical microtubule organization	4.98E-03
88	GO:0048278: vesicle docking	5.32E-03
89	GO:0006633: fatty acid biosynthetic process	5.63E-03
90	GO:0030433: ubiquitin-dependent ERAD pathway	5.66E-03
91	GO:0006012: galactose metabolic process	6.01E-03
92	GO:0009561: megagametogenesis	6.36E-03
93	GO:0042127: regulation of cell proliferation	6.36E-03
94	GO:0051028: mRNA transport	6.73E-03
95	GO:0006470: protein dephosphorylation	7.07E-03
96	GO:0007166: cell surface receptor signaling pathway	7.07E-03
97	GO:0010118: stomatal movement	7.10E-03
98	GO:0010501: RNA secondary structure unwinding	7.10E-03
99	GO:0010305: leaf vascular tissue pattern formation	7.48E-03
100	GO:0010182: sugar mediated signaling pathway	7.48E-03
101	GO:0009749: response to glucose	8.26E-03
102	GO:0019252: starch biosynthetic process	8.26E-03
103	GO:0016032: viral process	9.07E-03
104	GO:0010090: trichome morphogenesis	9.48E-03
105	GO:0006904: vesicle docking involved in exocytosis	1.03E-02
106	GO:0009737: response to abscisic acid	1.08E-02
107	GO:0080167: response to karrikin	1.19E-02
108	GO:0006906: vesicle fusion	1.21E-02
109	GO:0006888: ER to Golgi vesicle-mediated transport	1.26E-02
110	GO:0046777: protein autophosphorylation	1.27E-02
111	GO:0016310: phosphorylation	1.34E-02
112	GO:0030244: cellulose biosynthetic process	1.35E-02
113	GO:0048767: root hair elongation	1.40E-02
114	GO:0006499: N-terminal protein myristoylation	1.45E-02
115	GO:0009414: response to water deprivation	1.48E-02
116	GO:0007568: aging	1.50E-02
117	GO:0045087: innate immune response	1.60E-02
118	GO:0016051: carbohydrate biosynthetic process	1.60E-02
119	GO:0030001: metal ion transport	1.76E-02
120	GO:0050832: defense response to fungus	1.78E-02
121	GO:0006631: fatty acid metabolic process	1.81E-02
122	GO:0051707: response to other organism	1.92E-02
123	GO:0015031: protein transport	2.06E-02
124	GO:0009651: response to salt stress	2.13E-02
125	GO:0031347: regulation of defense response	2.19E-02
126	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.19E-02
127	GO:0009846: pollen germination	2.25E-02
128	GO:0009809: lignin biosynthetic process	2.37E-02
129	GO:0051603: proteolysis involved in cellular protein catabolic process	2.43E-02
130	GO:0010224: response to UV-B	2.43E-02
131	GO:0006417: regulation of translation	2.55E-02
132	GO:0005975: carbohydrate metabolic process	2.58E-02
133	GO:0006096: glycolytic process	2.67E-02
134	GO:0009620: response to fungus	2.85E-02
135	GO:0051726: regulation of cell cycle	3.17E-02
136	GO:0009611: response to wounding	3.19E-02
137	GO:0035556: intracellular signal transduction	3.29E-02
138	GO:0007165: signal transduction	3.81E-02
139	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
2	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
3	GO:0004846: urate oxidase activity	0.00E+00
4	GO:0004370: glycerol kinase activity	0.00E+00
5	GO:0016603: glutaminyl-peptide cyclotransferase activity	0.00E+00
6	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.65E-06
7	GO:0017137: Rab GTPase binding	1.16E-05
8	GO:0015085: calcium ion transmembrane transporter activity	8.61E-05
9	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	8.61E-05
10	GO:0034450: ubiquitin-ubiquitin ligase activity	8.61E-05
11	GO:0005096: GTPase activator activity	9.09E-05
12	GO:0030742: GTP-dependent protein binding	2.04E-04
13	GO:0045140: inositol phosphoceramide synthase activity	2.04E-04
14	GO:0019200: carbohydrate kinase activity	2.04E-04
15	GO:0005093: Rab GDP-dissociation inhibitor activity	3.42E-04
16	GO:0008253: 5'-nucleotidase activity	3.42E-04
17	GO:0004751: ribose-5-phosphate isomerase activity	3.42E-04
18	GO:0004383: guanylate cyclase activity	3.42E-04
19	GO:0005524: ATP binding	4.52E-04
20	GO:0001653: peptide receptor activity	4.92E-04
21	GO:0004930: G-protein coupled receptor activity	6.55E-04
22	GO:0016301: kinase activity	7.18E-04
23	GO:0015301: anion:anion antiporter activity	8.29E-04
24	GO:0005459: UDP-galactose transmembrane transporter activity	8.29E-04
25	GO:0005452: inorganic anion exchanger activity	8.29E-04
26	GO:0004674: protein serine/threonine kinase activity	1.07E-03
27	GO:0102391: decanoate--CoA ligase activity	1.20E-03
28	GO:0004747: ribokinase activity	1.20E-03
29	GO:0004467: long-chain fatty acid-CoA ligase activity	1.41E-03
30	GO:0008312: 7S RNA binding	1.63E-03
31	GO:0004034: aldose 1-epimerase activity	1.63E-03
32	GO:0008865: fructokinase activity	1.63E-03
33	GO:0052747: sinapyl alcohol dehydrogenase activity	1.63E-03
34	GO:0005267: potassium channel activity	1.86E-03
35	GO:0005484: SNAP receptor activity	1.89E-03
36	GO:0005198: structural molecule activity	2.12E-03
37	GO:0004743: pyruvate kinase activity	2.35E-03
38	GO:0030955: potassium ion binding	2.35E-03
39	GO:0005515: protein binding	3.01E-03
40	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.15E-03
41	GO:0005388: calcium-transporting ATPase activity	3.43E-03
42	GO:0003779: actin binding	3.49E-03
43	GO:0003774: motor activity	3.73E-03
44	GO:0004725: protein tyrosine phosphatase activity	4.34E-03
45	GO:0005385: zinc ion transmembrane transporter activity	4.65E-03
46	GO:0043130: ubiquitin binding	4.65E-03
47	GO:0004707: MAP kinase activity	5.32E-03
48	GO:0008270: zinc ion binding	5.80E-03
49	GO:0004672: protein kinase activity	6.15E-03
50	GO:0030276: clathrin binding	7.48E-03
51	GO:0008536: Ran GTPase binding	7.48E-03
52	GO:0001085: RNA polymerase II transcription factor binding	7.48E-03
53	GO:0046873: metal ion transmembrane transporter activity	7.48E-03
54	GO:0016853: isomerase activity	7.87E-03
55	GO:0004518: nuclease activity	9.07E-03
56	GO:0003682: chromatin binding	1.01E-02
57	GO:0004806: triglyceride lipase activity	1.26E-02
58	GO:0004004: ATP-dependent RNA helicase activity	1.26E-02
59	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.50E-02
60	GO:0008422: beta-glucosidase activity	1.70E-02
61	GO:0000149: SNARE binding	1.70E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.70E-02
63	GO:0035091: phosphatidylinositol binding	2.02E-02
64	GO:0008026: ATP-dependent helicase activity	3.17E-02
65	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.92E-02
66	GO:0030246: carbohydrate binding	4.19E-02
67	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02
68	GO:0005516: calmodulin binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	3.51E-07
2	GO:0005911: cell-cell junction	8.61E-05
3	GO:0005829: cytosol	2.87E-04
4	GO:0030130: clathrin coat of trans-Golgi network vesicle	3.42E-04
5	GO:0030132: clathrin coat of coated pit	3.42E-04
6	GO:0005968: Rab-protein geranylgeranyltransferase complex	4.92E-04
7	GO:0009504: cell plate	6.01E-04
8	GO:0030127: COPII vesicle coat	1.01E-03
9	GO:0030173: integral component of Golgi membrane	1.20E-03
10	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	1.41E-03
11	GO:0005789: endoplasmic reticulum membrane	1.56E-03
12	GO:0030131: clathrin adaptor complex	1.63E-03
13	GO:0031902: late endosome membrane	1.75E-03
14	GO:0010494: cytoplasmic stress granule	2.10E-03
15	GO:0030125: clathrin vesicle coat	2.61E-03
16	GO:0016459: myosin complex	2.61E-03
17	GO:0048471: perinuclear region of cytoplasm	2.87E-03
18	GO:0030176: integral component of endoplasmic reticulum membrane	4.03E-03
19	GO:0009524: phragmoplast	4.73E-03
20	GO:0005905: clathrin-coated pit	5.32E-03
21	GO:0000139: Golgi membrane	5.44E-03
22	GO:0005794: Golgi apparatus	6.59E-03
23	GO:0005737: cytoplasm	8.18E-03
24	GO:0031965: nuclear membrane	8.26E-03
25	GO:0000145: exocyst	9.07E-03
26	GO:0000932: P-body	1.12E-02
27	GO:0005667: transcription factor complex	1.21E-02
28	GO:0000151: ubiquitin ligase complex	1.35E-02
29	GO:0005819: spindle	1.70E-02
30	GO:0031201: SNARE complex	1.81E-02
31	GO:0009505: plant-type cell wall	2.03E-02
32	GO:0005856: cytoskeleton	2.08E-02
33	GO:0005783: endoplasmic reticulum	2.19E-02
34	GO:0009506: plasmodesma	2.46E-02
35	GO:0005635: nuclear envelope	2.49E-02
36	GO:0010008: endosome membrane	2.73E-02
37	GO:0012505: endomembrane system	2.98E-02
38	GO:0009543: chloroplast thylakoid lumen	3.57E-02
39	GO:0005777: peroxisome	3.58E-02
40	GO:0016021: integral component of membrane	4.52E-02