GO Enrichment Analysis of Co-expressed Genes with
AT5G38290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 6 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 7 | GO:0006412: translation | 2.83E-08 |
| 8 | GO:0042254: ribosome biogenesis | 3.61E-08 |
| 9 | GO:0015979: photosynthesis | 2.46E-06 |
| 10 | GO:0010236: plastoquinone biosynthetic process | 1.20E-05 |
| 11 | GO:0031365: N-terminal protein amino acid modification | 1.20E-05 |
| 12 | GO:0032544: plastid translation | 5.90E-05 |
| 13 | GO:1904966: positive regulation of vitamin E biosynthetic process | 8.78E-05 |
| 14 | GO:1904964: positive regulation of phytol biosynthetic process | 8.78E-05 |
| 15 | GO:0042371: vitamin K biosynthetic process | 8.78E-05 |
| 16 | GO:0043686: co-translational protein modification | 8.78E-05 |
| 17 | GO:0071588: hydrogen peroxide mediated signaling pathway | 8.78E-05 |
| 18 | GO:0009773: photosynthetic electron transport in photosystem I | 1.25E-04 |
| 19 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.08E-04 |
| 20 | GO:0010024: phytochromobilin biosynthetic process | 2.08E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.08E-04 |
| 22 | GO:0071492: cellular response to UV-A | 3.48E-04 |
| 23 | GO:0031022: nuclear migration along microfilament | 3.48E-04 |
| 24 | GO:0006788: heme oxidation | 3.48E-04 |
| 25 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.48E-04 |
| 26 | GO:0006424: glutamyl-tRNA aminoacylation | 5.01E-04 |
| 27 | GO:2001141: regulation of RNA biosynthetic process | 5.01E-04 |
| 28 | GO:0071486: cellular response to high light intensity | 6.66E-04 |
| 29 | GO:0009765: photosynthesis, light harvesting | 6.66E-04 |
| 30 | GO:0032543: mitochondrial translation | 8.44E-04 |
| 31 | GO:0009904: chloroplast accumulation movement | 8.44E-04 |
| 32 | GO:0045038: protein import into chloroplast thylakoid membrane | 8.44E-04 |
| 33 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.03E-03 |
| 34 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.03E-03 |
| 35 | GO:0032973: amino acid export | 1.03E-03 |
| 36 | GO:0018298: protein-chromophore linkage | 1.21E-03 |
| 37 | GO:0042372: phylloquinone biosynthetic process | 1.23E-03 |
| 38 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.23E-03 |
| 39 | GO:0017148: negative regulation of translation | 1.23E-03 |
| 40 | GO:0009903: chloroplast avoidance movement | 1.23E-03 |
| 41 | GO:0010189: vitamin E biosynthetic process | 1.23E-03 |
| 42 | GO:0010019: chloroplast-nucleus signaling pathway | 1.23E-03 |
| 43 | GO:0009955: adaxial/abaxial pattern specification | 1.23E-03 |
| 44 | GO:1901259: chloroplast rRNA processing | 1.23E-03 |
| 45 | GO:0009772: photosynthetic electron transport in photosystem II | 1.44E-03 |
| 46 | GO:0043090: amino acid import | 1.44E-03 |
| 47 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.44E-03 |
| 48 | GO:0009658: chloroplast organization | 1.45E-03 |
| 49 | GO:0034599: cellular response to oxidative stress | 1.58E-03 |
| 50 | GO:0048564: photosystem I assembly | 1.66E-03 |
| 51 | GO:0071482: cellular response to light stimulus | 1.89E-03 |
| 52 | GO:0009644: response to high light intensity | 2.10E-03 |
| 53 | GO:0080144: amino acid homeostasis | 2.14E-03 |
| 54 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.39E-03 |
| 55 | GO:0006535: cysteine biosynthetic process from serine | 2.65E-03 |
| 56 | GO:0045036: protein targeting to chloroplast | 2.65E-03 |
| 57 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.65E-03 |
| 58 | GO:0009073: aromatic amino acid family biosynthetic process | 2.93E-03 |
| 59 | GO:0043085: positive regulation of catalytic activity | 2.93E-03 |
| 60 | GO:0006352: DNA-templated transcription, initiation | 2.93E-03 |
| 61 | GO:0019344: cysteine biosynthetic process | 4.74E-03 |
| 62 | GO:0000027: ribosomal large subunit assembly | 4.74E-03 |
| 63 | GO:0009561: megagametogenesis | 6.48E-03 |
| 64 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 6.86E-03 |
| 65 | GO:0042335: cuticle development | 7.24E-03 |
| 66 | GO:0006662: glycerol ether metabolic process | 7.62E-03 |
| 67 | GO:0007018: microtubule-based movement | 8.02E-03 |
| 68 | GO:0055085: transmembrane transport | 8.72E-03 |
| 69 | GO:0000302: response to reactive oxygen species | 8.83E-03 |
| 70 | GO:0009567: double fertilization forming a zygote and endosperm | 1.01E-02 |
| 71 | GO:0010027: thylakoid membrane organization | 1.14E-02 |
| 72 | GO:0042128: nitrate assimilation | 1.24E-02 |
| 73 | GO:0015995: chlorophyll biosynthetic process | 1.28E-02 |
| 74 | GO:0045454: cell redox homeostasis | 1.46E-02 |
| 75 | GO:0009631: cold acclimation | 1.53E-02 |
| 76 | GO:0006869: lipid transport | 1.61E-02 |
| 77 | GO:0009637: response to blue light | 1.63E-02 |
| 78 | GO:0010114: response to red light | 1.95E-02 |
| 79 | GO:0042538: hyperosmotic salinity response | 2.29E-02 |
| 80 | GO:0006857: oligopeptide transport | 2.53E-02 |
| 81 | GO:0006096: glycolytic process | 2.72E-02 |
| 82 | GO:0009735: response to cytokinin | 2.93E-02 |
| 83 | GO:0009611: response to wounding | 3.28E-02 |
| 84 | GO:0042744: hydrogen peroxide catabolic process | 3.99E-02 |
| 85 | GO:0009737: response to abscisic acid | 4.05E-02 |
| 86 | GO:0006457: protein folding | 4.14E-02 |
| 87 | GO:0006633: fatty acid biosynthetic process | 4.28E-02 |
| 88 | GO:0006413: translational initiation | 4.35E-02 |
| 89 | GO:0007623: circadian rhythm | 4.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0005048: signal sequence binding | 0.00E+00 |
| 4 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 5 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 6 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 9.30E-13 |
| 8 | GO:0003735: structural constituent of ribosome | 1.91E-08 |
| 9 | GO:0022891: substrate-specific transmembrane transporter activity | 1.37E-05 |
| 10 | GO:0016168: chlorophyll binding | 6.40E-05 |
| 11 | GO:0005080: protein kinase C binding | 8.78E-05 |
| 12 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 8.78E-05 |
| 13 | GO:0042586: peptide deformylase activity | 8.78E-05 |
| 14 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 8.78E-05 |
| 15 | GO:0031072: heat shock protein binding | 1.68E-04 |
| 16 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.08E-04 |
| 17 | GO:0043023: ribosomal large subunit binding | 5.01E-04 |
| 18 | GO:0008097: 5S rRNA binding | 5.01E-04 |
| 19 | GO:0004392: heme oxygenase (decyclizing) activity | 6.66E-04 |
| 20 | GO:0004659: prenyltransferase activity | 6.66E-04 |
| 21 | GO:0001053: plastid sigma factor activity | 6.66E-04 |
| 22 | GO:0016836: hydro-lyase activity | 6.66E-04 |
| 23 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 6.66E-04 |
| 24 | GO:0016987: sigma factor activity | 6.66E-04 |
| 25 | GO:0043495: protein anchor | 6.66E-04 |
| 26 | GO:0004040: amidase activity | 8.44E-04 |
| 27 | GO:0016688: L-ascorbate peroxidase activity | 1.03E-03 |
| 28 | GO:0004130: cytochrome-c peroxidase activity | 1.03E-03 |
| 29 | GO:0004124: cysteine synthase activity | 1.23E-03 |
| 30 | GO:0019899: enzyme binding | 1.44E-03 |
| 31 | GO:0008235: metalloexopeptidase activity | 1.44E-03 |
| 32 | GO:0008312: 7S RNA binding | 1.66E-03 |
| 33 | GO:0004033: aldo-keto reductase (NADP) activity | 1.66E-03 |
| 34 | GO:0008047: enzyme activator activity | 2.65E-03 |
| 35 | GO:0004177: aminopeptidase activity | 2.93E-03 |
| 36 | GO:0047372: acylglycerol lipase activity | 2.93E-03 |
| 37 | GO:0004565: beta-galactosidase activity | 3.50E-03 |
| 38 | GO:0051082: unfolded protein binding | 3.69E-03 |
| 39 | GO:0008266: poly(U) RNA binding | 3.80E-03 |
| 40 | GO:0047134: protein-disulfide reductase activity | 6.86E-03 |
| 41 | GO:0004791: thioredoxin-disulfide reductase activity | 8.02E-03 |
| 42 | GO:0042802: identical protein binding | 8.07E-03 |
| 43 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 9.67E-03 |
| 44 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.33E-02 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.38E-02 |
| 46 | GO:0003924: GTPase activity | 1.81E-02 |
| 47 | GO:0009055: electron carrier activity | 1.94E-02 |
| 48 | GO:0015293: symporter activity | 2.12E-02 |
| 49 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.18E-02 |
| 50 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.41E-02 |
| 51 | GO:0008289: lipid binding | 2.52E-02 |
| 52 | GO:0003777: microtubule motor activity | 2.60E-02 |
| 53 | GO:0015171: amino acid transmembrane transporter activity | 2.60E-02 |
| 54 | GO:0003723: RNA binding | 2.76E-02 |
| 55 | GO:0015035: protein disulfide oxidoreductase activity | 3.17E-02 |
| 56 | GO:0016740: transferase activity | 3.90E-02 |
| 57 | GO:0030170: pyridoxal phosphate binding | 3.92E-02 |
| 58 | GO:0008017: microtubule binding | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.52E-39 |
| 3 | GO:0009570: chloroplast stroma | 3.95E-20 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 3.88E-18 |
| 5 | GO:0009941: chloroplast envelope | 2.79E-15 |
| 6 | GO:0005840: ribosome | 1.16E-08 |
| 7 | GO:0009579: thylakoid | 1.45E-08 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 2.46E-06 |
| 9 | GO:0009523: photosystem II | 2.95E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.31E-05 |
| 11 | GO:0009547: plastid ribosome | 8.78E-05 |
| 12 | GO:0031977: thylakoid lumen | 1.59E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 2.08E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 2.99E-04 |
| 15 | GO:0009534: chloroplast thylakoid | 3.10E-04 |
| 16 | GO:0009509: chromoplast | 3.48E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 6.17E-04 |
| 18 | GO:0009536: plastid | 1.12E-03 |
| 19 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.89E-03 |
| 20 | GO:0005763: mitochondrial small ribosomal subunit | 2.14E-03 |
| 21 | GO:0000311: plastid large ribosomal subunit | 3.21E-03 |
| 22 | GO:0016020: membrane | 3.38E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 3.69E-03 |
| 24 | GO:0000312: plastid small ribosomal subunit | 3.80E-03 |
| 25 | GO:0030095: chloroplast photosystem II | 3.80E-03 |
| 26 | GO:0005623: cell | 4.73E-03 |
| 27 | GO:0042651: thylakoid membrane | 5.07E-03 |
| 28 | GO:0015935: small ribosomal subunit | 5.42E-03 |
| 29 | GO:0005871: kinesin complex | 6.86E-03 |
| 30 | GO:0031225: anchored component of membrane | 1.13E-02 |
| 31 | GO:0031969: chloroplast membrane | 1.22E-02 |
| 32 | GO:0005622: intracellular | 1.34E-02 |
| 33 | GO:0009707: chloroplast outer membrane | 1.38E-02 |
| 34 | GO:0015934: large ribosomal subunit | 1.53E-02 |
| 35 | GO:0022626: cytosolic ribosome | 3.07E-02 |