GO Enrichment Analysis of Co-expressed Genes with
AT5G35970
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1902171: regulation of tocopherol cyclase activity | 0.00E+00 |
| 2 | GO:0046677: response to antibiotic | 0.00E+00 |
| 3 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 4 | GO:0070584: mitochondrion morphogenesis | 0.00E+00 |
| 5 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 6 | GO:0015995: chlorophyll biosynthetic process | 1.74E-05 |
| 7 | GO:0009637: response to blue light | 3.03E-05 |
| 8 | GO:0010114: response to red light | 4.53E-05 |
| 9 | GO:0006741: NADP biosynthetic process | 1.07E-04 |
| 10 | GO:0050992: dimethylallyl diphosphate biosynthetic process | 1.07E-04 |
| 11 | GO:0010017: red or far-red light signaling pathway | 1.37E-04 |
| 12 | GO:0019674: NAD metabolic process | 1.84E-04 |
| 13 | GO:1902448: positive regulation of shade avoidance | 1.84E-04 |
| 14 | GO:0090153: regulation of sphingolipid biosynthetic process | 1.84E-04 |
| 15 | GO:0048575: short-day photoperiodism, flowering | 1.84E-04 |
| 16 | GO:0007623: circadian rhythm | 2.57E-04 |
| 17 | GO:0019363: pyridine nucleotide biosynthetic process | 2.70E-04 |
| 18 | GO:0010023: proanthocyanidin biosynthetic process | 3.64E-04 |
| 19 | GO:2000306: positive regulation of photomorphogenesis | 3.64E-04 |
| 20 | GO:0010600: regulation of auxin biosynthetic process | 3.64E-04 |
| 21 | GO:0009658: chloroplast organization | 4.55E-04 |
| 22 | GO:0016123: xanthophyll biosynthetic process | 4.63E-04 |
| 23 | GO:0009723: response to ethylene | 5.47E-04 |
| 24 | GO:0010218: response to far red light | 5.47E-04 |
| 25 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 5.67E-04 |
| 26 | GO:0045962: positive regulation of development, heterochronic | 5.67E-04 |
| 27 | GO:0080167: response to karrikin | 5.97E-04 |
| 28 | GO:0071470: cellular response to osmotic stress | 6.76E-04 |
| 29 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 6.76E-04 |
| 30 | GO:0010189: vitamin E biosynthetic process | 6.76E-04 |
| 31 | GO:0015979: photosynthesis | 7.03E-04 |
| 32 | GO:1900056: negative regulation of leaf senescence | 7.90E-04 |
| 33 | GO:0051510: regulation of unidimensional cell growth | 7.90E-04 |
| 34 | GO:0010161: red light signaling pathway | 7.90E-04 |
| 35 | GO:0009640: photomorphogenesis | 7.97E-04 |
| 36 | GO:0010928: regulation of auxin mediated signaling pathway | 9.08E-04 |
| 37 | GO:0009704: de-etiolation | 9.08E-04 |
| 38 | GO:0050821: protein stabilization | 9.08E-04 |
| 39 | GO:0007186: G-protein coupled receptor signaling pathway | 1.03E-03 |
| 40 | GO:0010100: negative regulation of photomorphogenesis | 1.03E-03 |
| 41 | GO:0009585: red, far-red light phototransduction | 1.06E-03 |
| 42 | GO:0010380: regulation of chlorophyll biosynthetic process | 1.29E-03 |
| 43 | GO:0006535: cysteine biosynthetic process from serine | 1.43E-03 |
| 44 | GO:0009688: abscisic acid biosynthetic process | 1.43E-03 |
| 45 | GO:0009641: shade avoidance | 1.43E-03 |
| 46 | GO:0009624: response to nematode | 1.48E-03 |
| 47 | GO:2000028: regulation of photoperiodism, flowering | 1.87E-03 |
| 48 | GO:0018107: peptidyl-threonine phosphorylation | 1.87E-03 |
| 49 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.87E-03 |
| 50 | GO:0009416: response to light stimulus | 1.97E-03 |
| 51 | GO:0010223: secondary shoot formation | 2.03E-03 |
| 52 | GO:0090351: seedling development | 2.19E-03 |
| 53 | GO:0034976: response to endoplasmic reticulum stress | 2.36E-03 |
| 54 | GO:0019344: cysteine biosynthetic process | 2.52E-03 |
| 55 | GO:0006874: cellular calcium ion homeostasis | 2.70E-03 |
| 56 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.70E-03 |
| 57 | GO:0010182: sugar mediated signaling pathway | 4.02E-03 |
| 58 | GO:0009741: response to brassinosteroid | 4.02E-03 |
| 59 | GO:0007018: microtubule-based movement | 4.23E-03 |
| 60 | GO:0006814: sodium ion transport | 4.23E-03 |
| 61 | GO:0009791: post-embryonic development | 4.43E-03 |
| 62 | GO:0009651: response to salt stress | 5.36E-03 |
| 63 | GO:0045454: cell redox homeostasis | 5.75E-03 |
| 64 | GO:0048573: photoperiodism, flowering | 6.69E-03 |
| 65 | GO:0018298: protein-chromophore linkage | 7.19E-03 |
| 66 | GO:0009813: flavonoid biosynthetic process | 7.43E-03 |
| 67 | GO:0006811: ion transport | 7.69E-03 |
| 68 | GO:0009910: negative regulation of flower development | 7.95E-03 |
| 69 | GO:0006865: amino acid transport | 8.21E-03 |
| 70 | GO:0034599: cellular response to oxidative stress | 8.74E-03 |
| 71 | GO:0051707: response to other organism | 1.01E-02 |
| 72 | GO:0006351: transcription, DNA-templated | 1.04E-02 |
| 73 | GO:0009644: response to high light intensity | 1.07E-02 |
| 74 | GO:0009965: leaf morphogenesis | 1.10E-02 |
| 75 | GO:0006355: regulation of transcription, DNA-templated | 1.10E-02 |
| 76 | GO:0006812: cation transport | 1.19E-02 |
| 77 | GO:0045893: positive regulation of transcription, DNA-templated | 1.45E-02 |
| 78 | GO:0016310: phosphorylation | 1.50E-02 |
| 79 | GO:0018105: peptidyl-serine phosphorylation | 1.64E-02 |
| 80 | GO:0009742: brassinosteroid mediated signaling pathway | 1.67E-02 |
| 81 | GO:0006468: protein phosphorylation | 1.89E-02 |
| 82 | GO:0009845: seed germination | 1.99E-02 |
| 83 | GO:0055114: oxidation-reduction process | 2.08E-02 |
| 84 | GO:0010228: vegetative to reproductive phase transition of meristem | 2.44E-02 |
| 85 | GO:0009739: response to gibberellin | 2.56E-02 |
| 86 | GO:0009826: unidimensional cell growth | 3.14E-02 |
| 87 | GO:0006970: response to osmotic stress | 3.40E-02 |
| 88 | GO:0007049: cell cycle | 3.49E-02 |
| 89 | GO:0048366: leaf development | 3.62E-02 |
| 90 | GO:0006810: transport | 3.75E-02 |
| 91 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.85E-02 |
| 92 | GO:0046686: response to cadmium ion | 3.97E-02 |
| 93 | GO:0044550: secondary metabolite biosynthetic process | 3.99E-02 |
| 94 | GO:0032259: methylation | 4.81E-02 |
| 95 | GO:0009751: response to salicylic acid | 4.90E-02 |
| 96 | GO:0009408: response to heat | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 3 | GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | 0.00E+00 |
| 4 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 5 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 6 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 7 | GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | 4.31E-05 |
| 8 | GO:0008158: hedgehog receptor activity | 4.31E-05 |
| 9 | GO:0050017: L-3-cyanoalanine synthase activity | 1.07E-04 |
| 10 | GO:0004103: choline kinase activity | 1.07E-04 |
| 11 | GO:0080045: quercetin 3'-O-glucosyltransferase activity | 1.07E-04 |
| 12 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 1.84E-04 |
| 13 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 2.70E-04 |
| 14 | GO:0004930: G-protein coupled receptor activity | 3.64E-04 |
| 15 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 4.63E-04 |
| 16 | GO:0051538: 3 iron, 4 sulfur cluster binding | 4.63E-04 |
| 17 | GO:0004462: lactoylglutathione lyase activity | 5.67E-04 |
| 18 | GO:0080046: quercetin 4'-O-glucosyltransferase activity | 5.67E-04 |
| 19 | GO:0004124: cysteine synthase activity | 6.76E-04 |
| 20 | GO:0051537: 2 iron, 2 sulfur cluster binding | 8.59E-04 |
| 21 | GO:0003951: NAD+ kinase activity | 1.03E-03 |
| 22 | GO:0071949: FAD binding | 1.16E-03 |
| 23 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 1.43E-03 |
| 24 | GO:0004672: protein kinase activity | 1.53E-03 |
| 25 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.87E-03 |
| 26 | GO:0005217: intracellular ligand-gated ion channel activity | 2.19E-03 |
| 27 | GO:0003712: transcription cofactor activity | 2.19E-03 |
| 28 | GO:0004970: ionotropic glutamate receptor activity | 2.19E-03 |
| 29 | GO:0004190: aspartic-type endopeptidase activity | 2.19E-03 |
| 30 | GO:0031409: pigment binding | 2.36E-03 |
| 31 | GO:0005216: ion channel activity | 2.70E-03 |
| 32 | GO:0004176: ATP-dependent peptidase activity | 2.88E-03 |
| 33 | GO:0008514: organic anion transmembrane transporter activity | 3.43E-03 |
| 34 | GO:0003756: protein disulfide isomerase activity | 3.43E-03 |
| 35 | GO:0005524: ATP binding | 4.23E-03 |
| 36 | GO:0008233: peptidase activity | 4.72E-03 |
| 37 | GO:0016168: chlorophyll binding | 6.21E-03 |
| 38 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 8.47E-03 |
| 39 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 9.77E-03 |
| 40 | GO:0016887: ATPase activity | 1.10E-02 |
| 41 | GO:0015293: symporter activity | 1.10E-02 |
| 42 | GO:0003777: microtubule motor activity | 1.34E-02 |
| 43 | GO:0015171: amino acid transmembrane transporter activity | 1.34E-02 |
| 44 | GO:0003677: DNA binding | 1.40E-02 |
| 45 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.50E-02 |
| 46 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.50E-02 |
| 47 | GO:0016874: ligase activity | 1.54E-02 |
| 48 | GO:0015035: protein disulfide oxidoreductase activity | 1.64E-02 |
| 49 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.91E-02 |
| 50 | GO:0016829: lyase activity | 1.99E-02 |
| 51 | GO:0030170: pyridoxal phosphate binding | 2.02E-02 |
| 52 | GO:0015144: carbohydrate transmembrane transporter activity | 2.13E-02 |
| 53 | GO:0005515: protein binding | 2.17E-02 |
| 54 | GO:0015297: antiporter activity | 2.29E-02 |
| 55 | GO:0005351: sugar:proton symporter activity | 2.32E-02 |
| 56 | GO:0008017: microtubule binding | 2.44E-02 |
| 57 | GO:0008194: UDP-glycosyltransferase activity | 2.56E-02 |
| 58 | GO:0042802: identical protein binding | 2.80E-02 |
| 59 | GO:0005215: transporter activity | 2.83E-02 |
| 60 | GO:0046872: metal ion binding | 2.90E-02 |
| 61 | GO:0008168: methyltransferase activity | 3.14E-02 |
| 62 | GO:0004674: protein serine/threonine kinase activity | 3.59E-02 |
| 63 | GO:0004871: signal transducer activity | 4.41E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009535: chloroplast thylakoid membrane | 1.23E-05 |
| 2 | GO:0009534: chloroplast thylakoid | 4.38E-05 |
| 3 | GO:0009941: chloroplast envelope | 1.05E-04 |
| 4 | GO:0010287: plastoglobule | 1.53E-04 |
| 5 | GO:0016605: PML body | 1.84E-04 |
| 6 | GO:0030660: Golgi-associated vesicle membrane | 3.64E-04 |
| 7 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 3.64E-04 |
| 8 | GO:0009507: chloroplast | 3.84E-04 |
| 9 | GO:0009538: photosystem I reaction center | 9.08E-04 |
| 10 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 9.08E-04 |
| 11 | GO:0016604: nuclear body | 1.29E-03 |
| 12 | GO:0009706: chloroplast inner membrane | 1.48E-03 |
| 13 | GO:0005765: lysosomal membrane | 1.57E-03 |
| 14 | GO:0009579: thylakoid | 2.46E-03 |
| 15 | GO:0042651: thylakoid membrane | 2.70E-03 |
| 16 | GO:0005871: kinesin complex | 3.63E-03 |
| 17 | GO:0009522: photosystem I | 4.23E-03 |
| 18 | GO:0009523: photosystem II | 4.43E-03 |
| 19 | GO:0031969: chloroplast membrane | 4.80E-03 |
| 20 | GO:0016607: nuclear speck | 1.44E-02 |
| 21 | GO:0010008: endosome membrane | 1.44E-02 |
| 22 | GO:0005834: heterotrimeric G-protein complex | 1.47E-02 |
| 23 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.44E-02 |
| 24 | GO:0005874: microtubule | 3.67E-02 |