Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G28540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
2GO:0072321: chaperone-mediated protein transport0.00E+00
3GO:0071433: cell wall repair0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0006042: glucosamine biosynthetic process0.00E+00
6GO:1901137: carbohydrate derivative biosynthetic process0.00E+00
7GO:0044794: positive regulation by host of viral process0.00E+00
8GO:0042430: indole-containing compound metabolic process0.00E+00
9GO:0070212: protein poly-ADP-ribosylation0.00E+00
10GO:0045792: negative regulation of cell size0.00E+00
11GO:0071731: response to nitric oxide0.00E+00
12GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
13GO:0006457: protein folding2.41E-13
14GO:0034976: response to endoplasmic reticulum stress1.16E-11
15GO:0046686: response to cadmium ion2.19E-09
16GO:0045454: cell redox homeostasis2.93E-09
17GO:0042742: defense response to bacterium7.06E-07
18GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.58E-06
19GO:0031349: positive regulation of defense response4.41E-06
20GO:0009617: response to bacterium6.60E-06
21GO:0006468: protein phosphorylation1.52E-05
22GO:0055074: calcium ion homeostasis1.57E-05
23GO:0015696: ammonium transport3.50E-05
24GO:0006886: intracellular protein transport5.42E-05
25GO:0072488: ammonium transmembrane transport6.26E-05
26GO:0009615: response to virus6.40E-05
27GO:0015031: protein transport7.44E-05
28GO:0009626: plant-type hypersensitive response7.64E-05
29GO:0009627: systemic acquired resistance7.89E-05
30GO:0006465: signal peptide processing9.88E-05
31GO:0006979: response to oxidative stress1.50E-04
32GO:0016998: cell wall macromolecule catabolic process1.59E-04
33GO:0009651: response to salt stress1.73E-04
34GO:0016192: vesicle-mediated transport2.23E-04
35GO:0010150: leaf senescence2.99E-04
36GO:0010230: alternative respiration3.11E-04
37GO:0060862: negative regulation of floral organ abscission3.11E-04
38GO:0042964: thioredoxin reduction3.11E-04
39GO:0046244: salicylic acid catabolic process3.11E-04
40GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine3.11E-04
41GO:0034975: protein folding in endoplasmic reticulum3.11E-04
42GO:0009609: response to symbiotic bacterium3.11E-04
43GO:0009700: indole phytoalexin biosynthetic process3.11E-04
44GO:0006605: protein targeting3.21E-04
45GO:0006952: defense response3.58E-04
46GO:0030968: endoplasmic reticulum unfolded protein response3.94E-04
47GO:0000302: response to reactive oxygen species4.19E-04
48GO:0009751: response to salicylic acid4.46E-04
49GO:0006032: chitin catabolic process6.53E-04
50GO:0009553: embryo sac development6.64E-04
51GO:0051252: regulation of RNA metabolic process6.81E-04
52GO:0051258: protein polymerization6.81E-04
53GO:0002221: pattern recognition receptor signaling pathway6.81E-04
54GO:0031204: posttranslational protein targeting to membrane, translocation6.81E-04
55GO:2000072: regulation of defense response to fungus, incompatible interaction6.81E-04
56GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.81E-04
57GO:0045041: protein import into mitochondrial intermembrane space6.81E-04
58GO:0080181: lateral root branching6.81E-04
59GO:0015865: purine nucleotide transport6.81E-04
60GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.81E-04
61GO:0016049: cell growth8.80E-04
62GO:0006626: protein targeting to mitochondrion9.73E-04
63GO:1900140: regulation of seedling development1.10E-03
64GO:0010359: regulation of anion channel activity1.10E-03
65GO:0010581: regulation of starch biosynthetic process1.10E-03
66GO:0045793: positive regulation of cell size1.10E-03
67GO:0072661: protein targeting to plasma membrane1.10E-03
68GO:0010272: response to silver ion1.10E-03
69GO:0045039: protein import into mitochondrial inner membrane1.10E-03
70GO:0048281: inflorescence morphogenesis1.10E-03
71GO:0015695: organic cation transport1.10E-03
72GO:0006954: inflammatory response1.10E-03
73GO:1902626: assembly of large subunit precursor of preribosome1.10E-03
74GO:0009863: salicylic acid mediated signaling pathway1.50E-03
75GO:0000027: ribosomal large subunit assembly1.50E-03
76GO:0009855: determination of bilateral symmetry1.58E-03
77GO:0032877: positive regulation of DNA endoreduplication1.58E-03
78GO:0000187: activation of MAPK activity1.58E-03
79GO:0002239: response to oomycetes1.58E-03
80GO:0043207: response to external biotic stimulus1.58E-03
81GO:0033014: tetrapyrrole biosynthetic process1.58E-03
82GO:0046902: regulation of mitochondrial membrane permeability1.58E-03
83GO:0072334: UDP-galactose transmembrane transport1.58E-03
84GO:0051707: response to other organism1.73E-03
85GO:0007005: mitochondrion organization1.99E-03
86GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA2.12E-03
87GO:0010188: response to microbial phytotoxin2.12E-03
88GO:0080142: regulation of salicylic acid biosynthetic process2.12E-03
89GO:0060548: negative regulation of cell death2.12E-03
90GO:0051781: positive regulation of cell division2.12E-03
91GO:0000460: maturation of 5.8S rRNA2.12E-03
92GO:0042273: ribosomal large subunit biogenesis2.12E-03
93GO:0009625: response to insect2.17E-03
94GO:0009306: protein secretion2.36E-03
95GO:0006486: protein glycosylation2.53E-03
96GO:0046283: anthocyanin-containing compound metabolic process2.71E-03
97GO:0006564: L-serine biosynthetic process2.71E-03
98GO:0009697: salicylic acid biosynthetic process2.71E-03
99GO:0006662: glycerol ether metabolic process2.98E-03
100GO:0018258: protein O-linked glycosylation via hydroxyproline3.35E-03
101GO:0010942: positive regulation of cell death3.35E-03
102GO:0010405: arabinogalactan protein metabolic process3.35E-03
103GO:0000470: maturation of LSU-rRNA3.35E-03
104GO:0043248: proteasome assembly3.35E-03
105GO:0060918: auxin transport3.35E-03
106GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.35E-03
107GO:0010193: response to ozone3.68E-03
108GO:0006458: 'de novo' protein folding4.03E-03
109GO:0042026: protein refolding4.03E-03
110GO:0080167: response to karrikin4.29E-03
111GO:0010200: response to chitin4.52E-03
112GO:0009610: response to symbiotic fungus4.76E-03
113GO:0071446: cellular response to salicylic acid stimulus4.76E-03
114GO:1900056: negative regulation of leaf senescence4.76E-03
115GO:0080186: developmental vegetative growth4.76E-03
116GO:0009555: pollen development5.26E-03
117GO:0031540: regulation of anthocyanin biosynthetic process5.53E-03
118GO:0006102: isocitrate metabolic process5.53E-03
119GO:0009787: regulation of abscisic acid-activated signaling pathway5.53E-03
120GO:0006906: vesicle fusion5.93E-03
121GO:0010204: defense response signaling pathway, resistance gene-independent6.33E-03
122GO:2000031: regulation of salicylic acid mediated signaling pathway6.33E-03
123GO:0009699: phenylpropanoid biosynthetic process6.33E-03
124GO:0019430: removal of superoxide radicals6.33E-03
125GO:0010120: camalexin biosynthetic process6.33E-03
126GO:0008219: cell death6.93E-03
127GO:0006783: heme biosynthetic process7.19E-03
128GO:0010112: regulation of systemic acquired resistance7.19E-03
129GO:0006189: 'de novo' IMP biosynthetic process7.19E-03
130GO:0015780: nucleotide-sugar transport7.19E-03
131GO:0046685: response to arsenic-containing substance7.19E-03
132GO:0050832: defense response to fungus7.35E-03
133GO:0006499: N-terminal protein myristoylation7.65E-03
134GO:0009407: toxin catabolic process7.65E-03
135GO:0010205: photoinhibition8.07E-03
136GO:0043067: regulation of programmed cell death8.07E-03
137GO:0048354: mucilage biosynthetic process involved in seed coat development8.07E-03
138GO:0045087: innate immune response8.80E-03
139GO:0000103: sulfate assimilation9.00E-03
140GO:0010215: cellulose microfibril organization9.00E-03
141GO:0010162: seed dormancy process9.00E-03
142GO:0009870: defense response signaling pathway, resistance gene-dependent9.00E-03
143GO:0034599: cellular response to oxidative stress9.20E-03
144GO:0006099: tricarboxylic acid cycle9.20E-03
145GO:0007166: cell surface receptor signaling pathway9.45E-03
146GO:0000272: polysaccharide catabolic process9.96E-03
147GO:0072593: reactive oxygen species metabolic process9.96E-03
148GO:0009409: response to cold1.05E-02
149GO:0006887: exocytosis1.05E-02
150GO:0071365: cellular response to auxin stimulus1.10E-02
151GO:0012501: programmed cell death1.10E-02
152GO:0015706: nitrate transport1.10E-02
153GO:0010075: regulation of meristem growth1.20E-02
154GO:0055114: oxidation-reduction process1.25E-02
155GO:0009636: response to toxic substance1.28E-02
156GO:0009934: regulation of meristem structural organization1.31E-02
157GO:0048467: gynoecium development1.31E-02
158GO:0002237: response to molecule of bacterial origin1.31E-02
159GO:0031347: regulation of defense response1.38E-02
160GO:0042343: indole glucosinolate metabolic process1.42E-02
161GO:0010167: response to nitrate1.42E-02
162GO:0009846: pollen germination1.43E-02
163GO:0006364: rRNA processing1.54E-02
164GO:0030150: protein import into mitochondrial matrix1.65E-02
165GO:0009944: polarity specification of adaxial/abaxial axis1.65E-02
166GO:0009723: response to ethylene1.67E-02
167GO:0009414: response to water deprivation1.72E-02
168GO:0048316: seed development1.88E-02
169GO:0015992: proton transport1.89E-02
170GO:0098542: defense response to other organism1.89E-02
171GO:0061077: chaperone-mediated protein folding1.89E-02
172GO:0046777: protein autophosphorylation1.99E-02
173GO:0009620: response to fungus2.00E-02
174GO:0031348: negative regulation of defense response2.01E-02
175GO:0019748: secondary metabolic process2.01E-02
176GO:0009814: defense response, incompatible interaction2.01E-02
177GO:0009294: DNA mediated transformation2.14E-02
178GO:0009411: response to UV2.14E-02
179GO:0009624: response to nematode2.19E-02
180GO:0018105: peptidyl-serine phosphorylation2.26E-02
181GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.41E-02
182GO:0008033: tRNA processing2.55E-02
183GO:0034220: ion transmembrane transport2.55E-02
184GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
185GO:0010051: xylem and phloem pattern formation2.55E-02
186GO:0042631: cellular response to water deprivation2.55E-02
187GO:0010197: polar nucleus fusion2.68E-02
188GO:0048868: pollen tube development2.68E-02
189GO:0009960: endosperm development2.68E-02
190GO:0009646: response to absence of light2.83E-02
191GO:0006623: protein targeting to vacuole2.97E-02
192GO:0009408: response to heat2.98E-02
193GO:0006891: intra-Golgi vesicle-mediated transport3.12E-02
194GO:0002229: defense response to oomycetes3.12E-02
195GO:0009790: embryo development3.20E-02
196GO:0016032: viral process3.27E-02
197GO:0006810: transport3.41E-02
198GO:0030163: protein catabolic process3.42E-02
199GO:0009567: double fertilization forming a zygote and endosperm3.58E-02
200GO:0006464: cellular protein modification process3.58E-02
201GO:0000910: cytokinesis3.89E-02
202GO:0001666: response to hypoxia4.05E-02
203GO:0009816: defense response to bacterium, incompatible interaction4.22E-02
204GO:0042128: nitrate assimilation4.38E-02
205GO:0006950: response to stress4.55E-02
206GO:0015995: chlorophyll biosynthetic process4.55E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0005212: structural constituent of eye lens0.00E+00
3GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity0.00E+00
4GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
5GO:0008752: FMN reductase activity0.00E+00
6GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
7GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
8GO:0004164: diphthine synthase activity0.00E+00
9GO:0052873: FMN reductase (NADPH) activity0.00E+00
10GO:0003756: protein disulfide isomerase activity1.20E-10
11GO:0051082: unfolded protein binding2.76E-08
12GO:0008320: protein transmembrane transporter activity5.75E-06
13GO:0005524: ATP binding1.02E-05
14GO:0005460: UDP-glucose transmembrane transporter activity3.50E-05
15GO:0047631: ADP-ribose diphosphatase activity9.88E-05
16GO:0005459: UDP-galactose transmembrane transporter activity9.88E-05
17GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.05E-04
18GO:0008519: ammonium transmembrane transporter activity1.43E-04
19GO:0000210: NAD+ diphosphatase activity1.43E-04
20GO:0004674: protein serine/threonine kinase activity2.32E-04
21GO:0016301: kinase activity2.85E-04
22GO:0004325: ferrochelatase activity3.11E-04
23GO:0004638: phosphoribosylaminoimidazole carboxylase activity3.11E-04
24GO:0097367: carbohydrate derivative binding3.11E-04
25GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity3.11E-04
26GO:0080042: ADP-glucose pyrophosphohydrolase activity3.11E-04
27GO:0048037: cofactor binding3.11E-04
28GO:0004714: transmembrane receptor protein tyrosine kinase activity3.21E-04
29GO:0051287: NAD binding3.39E-04
30GO:0004791: thioredoxin-disulfide reductase activity3.49E-04
31GO:0005509: calcium ion binding4.51E-04
32GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.95E-04
33GO:0004568: chitinase activity6.53E-04
34GO:0004775: succinate-CoA ligase (ADP-forming) activity6.81E-04
35GO:0004338: glucan exo-1,3-beta-glucosidase activity6.81E-04
36GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity6.81E-04
37GO:0048531: beta-1,3-galactosyltransferase activity6.81E-04
38GO:0004776: succinate-CoA ligase (GDP-forming) activity6.81E-04
39GO:0080041: ADP-ribose pyrophosphohydrolase activity6.81E-04
40GO:0004617: phosphoglycerate dehydrogenase activity6.81E-04
41GO:0043021: ribonucleoprotein complex binding6.81E-04
42GO:0008428: ribonuclease inhibitor activity6.81E-04
43GO:0017110: nucleoside-diphosphatase activity6.81E-04
44GO:0015035: protein disulfide oxidoreductase activity7.27E-04
45GO:0004148: dihydrolipoyl dehydrogenase activity1.10E-03
46GO:0000030: mannosyltransferase activity1.10E-03
47GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.10E-03
48GO:0008061: chitin binding1.22E-03
49GO:0003746: translation elongation factor activity1.26E-03
50GO:0008565: protein transporter activity1.28E-03
51GO:0004672: protein kinase activity1.38E-03
52GO:0004449: isocitrate dehydrogenase (NAD+) activity1.58E-03
53GO:0035529: NADH pyrophosphatase activity1.58E-03
54GO:0009678: hydrogen-translocating pyrophosphatase activity1.58E-03
55GO:0004298: threonine-type endopeptidase activity1.82E-03
56GO:0010011: auxin binding2.12E-03
57GO:0005086: ARF guanyl-nucleotide exchange factor activity2.12E-03
58GO:0047134: protein-disulfide reductase activity2.56E-03
59GO:0030246: carbohydrate binding2.59E-03
60GO:0008948: oxaloacetate decarboxylase activity2.71E-03
61GO:0005471: ATP:ADP antiporter activity2.71E-03
62GO:0002020: protease binding2.71E-03
63GO:0005507: copper ion binding2.90E-03
64GO:0010181: FMN binding3.20E-03
65GO:1990714: hydroxyproline O-galactosyltransferase activity3.35E-03
66GO:0004029: aldehyde dehydrogenase (NAD) activity3.35E-03
67GO:0008233: peptidase activity4.18E-03
68GO:0043295: glutathione binding4.76E-03
69GO:0004427: inorganic diphosphatase activity4.76E-03
70GO:0004708: MAP kinase kinase activity5.53E-03
71GO:0009931: calcium-dependent protein serine/threonine kinase activity5.93E-03
72GO:0004683: calmodulin-dependent protein kinase activity6.26E-03
73GO:0008135: translation factor activity, RNA binding6.33E-03
74GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.28E-03
75GO:0050897: cobalt ion binding8.02E-03
76GO:0015112: nitrate transmembrane transporter activity8.07E-03
77GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.07E-03
78GO:0004713: protein tyrosine kinase activity9.00E-03
79GO:0000149: SNARE binding9.61E-03
80GO:0044183: protein binding involved in protein folding9.96E-03
81GO:0004364: glutathione transferase activity1.09E-02
82GO:0008378: galactosyltransferase activity1.10E-02
83GO:0005484: SNAP receptor activity1.14E-02
84GO:0031072: heat shock protein binding1.20E-02
85GO:0015114: phosphate ion transmembrane transporter activity1.20E-02
86GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.31E-02
87GO:0004190: aspartic-type endopeptidase activity1.42E-02
88GO:0003712: transcription cofactor activity1.42E-02
89GO:0016887: ATPase activity1.50E-02
90GO:0004407: histone deacetylase activity1.65E-02
91GO:0000166: nucleotide binding1.84E-02
92GO:0033612: receptor serine/threonine kinase binding1.89E-02
93GO:0004707: MAP kinase activity1.89E-02
94GO:0008810: cellulase activity2.14E-02
95GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.52E-02
96GO:0016758: transferase activity, transferring hexosyl groups2.67E-02
97GO:0030276: clathrin binding2.68E-02
98GO:0016853: isomerase activity2.83E-02
99GO:0004872: receptor activity2.97E-02
100GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.73E-02
101GO:0008483: transaminase activity3.73E-02
102GO:0016597: amino acid binding3.89E-02
103GO:0051213: dioxygenase activity4.05E-02
104GO:0015250: water channel activity4.05E-02
105GO:0030247: polysaccharide binding4.55E-02
106GO:0004721: phosphoprotein phosphatase activity4.55E-02
RankGO TermAdjusted P value
1GO:0031205: endoplasmic reticulum Sec complex0.00E+00
2GO:0042719: mitochondrial intermembrane space protein transporter complex0.00E+00
3GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
4GO:0005784: Sec61 translocon complex0.00E+00
5GO:0005783: endoplasmic reticulum3.84E-19
6GO:0005788: endoplasmic reticulum lumen6.37E-18
7GO:0005886: plasma membrane1.06E-15
8GO:0005773: vacuole2.83E-07
9GO:0005774: vacuolar membrane2.71E-06
10GO:0030134: ER to Golgi transport vesicle4.41E-06
11GO:0009507: chloroplast2.30E-05
12GO:0005618: cell wall2.62E-05
13GO:0005829: cytosol1.40E-04
14GO:0005789: endoplasmic reticulum membrane1.40E-04
15GO:0048046: apoplast2.32E-04
16GO:0005787: signal peptidase complex3.11E-04
17GO:0031090: organelle membrane4.73E-04
18GO:0030665: clathrin-coated vesicle membrane5.59E-04
19GO:0009506: plasmodesma5.80E-04
20GO:0016021: integral component of membrane6.51E-04
21GO:0005740: mitochondrial envelope6.53E-04
22GO:0070545: PeBoW complex6.81E-04
23GO:0009505: plant-type cell wall9.50E-04
24GO:0030176: integral component of endoplasmic reticulum membrane1.22E-03
25GO:0016020: membrane1.34E-03
26GO:0005758: mitochondrial intermembrane space1.50E-03
27GO:0005743: mitochondrial inner membrane1.69E-03
28GO:0005794: Golgi apparatus1.81E-03
29GO:0005839: proteasome core complex1.82E-03
30GO:0030660: Golgi-associated vesicle membrane2.12E-03
31GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.12E-03
32GO:0000502: proteasome complex2.53E-03
33GO:0005747: mitochondrial respiratory chain complex I3.26E-03
34GO:0031225: anchored component of membrane3.47E-03
35GO:0005801: cis-Golgi network4.03E-03
36GO:0030173: integral component of Golgi membrane4.03E-03
37GO:0016363: nuclear matrix4.03E-03
38GO:0032580: Golgi cisterna membrane4.45E-03
39GO:0030687: preribosome, large subunit precursor4.76E-03
40GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.76E-03
41GO:0030131: clathrin adaptor complex5.53E-03
42GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.53E-03
43GO:0000326: protein storage vacuole6.33E-03
44GO:0019773: proteasome core complex, alpha-subunit complex6.33E-03
45GO:0005739: mitochondrion6.70E-03
46GO:0031901: early endosome membrane7.19E-03
47GO:0017119: Golgi transport complex9.00E-03
48GO:0005765: lysosomal membrane9.96E-03
49GO:0031201: SNARE complex1.05E-02
50GO:0031012: extracellular matrix1.20E-02
51GO:0005750: mitochondrial respiratory chain complex III1.31E-02
52GO:0005795: Golgi stack1.42E-02
53GO:0005730: nucleolus1.61E-02
54GO:0005741: mitochondrial outer membrane1.89E-02
55GO:0005834: heterotrimeric G-protein complex1.94E-02
56GO:0005744: mitochondrial inner membrane presequence translocase complex2.27E-02
57GO:0005623: cell2.82E-02
58GO:0009504: cell plate2.97E-02
59GO:0000139: Golgi membrane2.98E-02
60GO:0005759: mitochondrial matrix3.45E-02
61GO:0000932: P-body4.05E-02
62GO:0005887: integral component of plasma membrane4.34E-02
63GO:0019005: SCF ubiquitin ligase complex4.89E-02
64GO:0000151: ubiquitin ligase complex4.89E-02
65GO:0046658: anchored component of plasma membrane4.98E-02
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Gene type



Gene DE type