co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G28500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0048564: photosystem I assembly	8.99E-06
3	GO:0000373: Group II intron splicing	1.48E-05
4	GO:1904143: positive regulation of carotenoid biosynthetic process	7.88E-05
5	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.88E-05
6	GO:0051604: protein maturation	1.37E-04
7	GO:0009741: response to brassinosteroid	1.37E-04
8	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.37E-04
9	GO:0051513: regulation of monopolar cell growth	2.04E-04
10	GO:0016556: mRNA modification	2.04E-04
11	GO:0071483: cellular response to blue light	2.76E-04
12	GO:0010021: amylopectin biosynthetic process	2.76E-04
13	GO:0015995: chlorophyll biosynthetic process	3.00E-04
14	GO:0045038: protein import into chloroplast thylakoid membrane	3.53E-04
15	GO:0010190: cytochrome b6f complex assembly	4.34E-04
16	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.34E-04
17	GO:0010358: leaf shaping	4.34E-04
18	GO:1901259: chloroplast rRNA processing	5.20E-04
19	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.07E-04
20	GO:0006826: iron ion transport	6.07E-04
21	GO:0045292: mRNA cis splicing, via spliceosome	6.99E-04
22	GO:0071482: cellular response to light stimulus	7.94E-04
23	GO:0010206: photosystem II repair	8.92E-04
24	GO:0010205: photoinhibition	9.92E-04
25	GO:1900865: chloroplast RNA modification	9.92E-04
26	GO:0006352: DNA-templated transcription, initiation	1.20E-03
27	GO:0010207: photosystem II assembly	1.55E-03
28	GO:0010143: cutin biosynthetic process	1.55E-03
29	GO:0010039: response to iron ion	1.67E-03
30	GO:0090351: seedling development	1.67E-03
31	GO:0006418: tRNA aminoacylation for protein translation	2.05E-03
32	GO:0009269: response to desiccation	2.19E-03
33	GO:0006508: proteolysis	2.48E-03
34	GO:0009658: chloroplast organization	2.59E-03
35	GO:0010268: brassinosteroid homeostasis	3.05E-03
36	GO:0009646: response to absence of light	3.20E-03
37	GO:0019252: starch biosynthetic process	3.36E-03
38	GO:0008654: phospholipid biosynthetic process	3.36E-03
39	GO:0016132: brassinosteroid biosynthetic process	3.51E-03
40	GO:0080156: mitochondrial mRNA modification	3.51E-03
41	GO:0019761: glucosinolate biosynthetic process	3.68E-03
42	GO:0032502: developmental process	3.68E-03
43	GO:0030163: protein catabolic process	3.84E-03
44	GO:0016125: sterol metabolic process	4.00E-03
45	GO:0010027: thylakoid membrane organization	4.52E-03
46	GO:0006629: lipid metabolic process	4.70E-03
47	GO:0008152: metabolic process	5.18E-03
48	GO:0048481: plant ovule development	5.42E-03
49	GO:0009867: jasmonic acid mediated signaling pathway	6.38E-03
50	GO:0006839: mitochondrial transport	6.98E-03
51	GO:0006631: fatty acid metabolic process	7.19E-03
52	GO:0048316: seed development	1.08E-02
53	GO:0009742: brassinosteroid mediated signaling pathway	1.25E-02
54	GO:0042744: hydrogen peroxide catabolic process	1.54E-02
55	GO:0009451: RNA modification	1.80E-02
56	GO:0009826: unidimensional cell growth	2.34E-02
57	GO:0005975: carbohydrate metabolic process	2.57E-02
58	GO:0048366: leaf development	2.71E-02
59	GO:0055114: oxidation-reduction process	2.73E-02
60	GO:0015979: photosynthesis	3.09E-02
61	GO:0009753: response to jasmonic acid	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0004222: metalloendopeptidase activity	1.23E-05
5	GO:0010012: steroid 22-alpha hydroxylase activity	3.12E-05
6	GO:0003867: 4-aminobutyrate transaminase activity	3.12E-05
7	GO:0016630: protochlorophyllide reductase activity	7.88E-05
8	GO:0033201: alpha-1,4-glucan synthase activity	7.88E-05
9	GO:0070330: aromatase activity	1.37E-04
10	GO:0004373: glycogen (starch) synthase activity	1.37E-04
11	GO:0002161: aminoacyl-tRNA editing activity	1.37E-04
12	GO:0016851: magnesium chelatase activity	2.04E-04
13	GO:0009011: starch synthase activity	2.76E-04
14	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.76E-04
15	GO:0001053: plastid sigma factor activity	2.76E-04
16	GO:0016987: sigma factor activity	2.76E-04
17	GO:0003959: NADPH dehydrogenase activity	3.53E-04
18	GO:0018685: alkane 1-monooxygenase activity	3.53E-04
19	GO:0008374: O-acyltransferase activity	3.53E-04
20	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.34E-04
21	GO:0004519: endonuclease activity	6.42E-04
22	GO:0008312: 7S RNA binding	6.99E-04
23	GO:0004033: aldo-keto reductase (NADP) activity	6.99E-04
24	GO:0047372: acylglycerol lipase activity	1.20E-03
25	GO:0000049: tRNA binding	1.31E-03
26	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.55E-03
27	GO:0004176: ATP-dependent peptidase activity	2.19E-03
28	GO:0004601: peroxidase activity	2.59E-03
29	GO:0004812: aminoacyl-tRNA ligase activity	2.75E-03
30	GO:0005506: iron ion binding	2.78E-03
31	GO:0016791: phosphatase activity	4.00E-03
32	GO:0008237: metallopeptidase activity	4.17E-03
33	GO:0046872: metal ion binding	4.26E-03
34	GO:0051213: dioxygenase activity	4.52E-03
35	GO:0020037: heme binding	5.05E-03
36	GO:0008236: serine-type peptidase activity	5.23E-03
37	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.38E-03
38	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-03
39	GO:0003723: RNA binding	1.02E-02
40	GO:0045735: nutrient reservoir activity	1.05E-02
41	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.10E-02
42	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.13E-02
43	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.13E-02
44	GO:0022857: transmembrane transporter activity	1.15E-02
45	GO:0016746: transferase activity, transferring acyl groups	1.22E-02
46	GO:0016757: transferase activity, transferring glycosyl groups	1.34E-02
47	GO:0005525: GTP binding	1.37E-02
48	GO:0019843: rRNA binding	1.41E-02
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.43E-02
50	GO:0008194: UDP-glycosyltransferase activity	1.91E-02
51	GO:0008233: peptidase activity	2.77E-02
52	GO:0016787: hydrolase activity	3.63E-02
53	GO:0003924: GTPase activity	3.71E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.68E-14
2	GO:0009535: chloroplast thylakoid membrane	3.07E-06
3	GO:0009706: chloroplast inner membrane	6.55E-05
4	GO:0080085: signal recognition particle, chloroplast targeting	7.88E-05
5	GO:0009536: plastid	8.42E-05
6	GO:0009526: plastid envelope	2.76E-04
7	GO:0055035: plastid thylakoid membrane	3.53E-04
8	GO:0009570: chloroplast stroma	4.38E-04
9	GO:0043231: intracellular membrane-bounded organelle	6.53E-04
10	GO:0009501: amyloplast	6.99E-04
11	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.94E-04
12	GO:0009941: chloroplast envelope	1.06E-03
13	GO:0005578: proteinaceous extracellular matrix	1.43E-03
14	GO:0009534: chloroplast thylakoid	1.48E-03
15	GO:0031969: chloroplast membrane	3.20E-03
16	GO:0016021: integral component of membrane	7.05E-03
17	GO:0005618: cell wall	1.63E-02
18	GO:0009505: plant-type cell wall	2.12E-02
19	GO:0046658: anchored component of plasma membrane	2.16E-02
20	GO:0005743: mitochondrial inner membrane	3.52E-02