Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006042: glucosamine biosynthetic process0.00E+00
2GO:1901137: carbohydrate derivative biosynthetic process0.00E+00
3GO:0044794: positive regulation by host of viral process0.00E+00
4GO:0070212: protein poly-ADP-ribosylation0.00E+00
5GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
6GO:0006457: protein folding1.37E-14
7GO:0055074: calcium ion homeostasis1.12E-06
8GO:0034976: response to endoplasmic reticulum stress3.82E-06
9GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.91E-05
10GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c2.60E-05
11GO:0006605: protein targeting3.42E-05
12GO:0030968: endoplasmic reticulum unfolded protein response4.37E-05
13GO:0080093: regulation of photorespiration7.23E-05
14GO:0031998: regulation of fatty acid beta-oxidation7.23E-05
15GO:0050691: regulation of defense response to virus by host7.23E-05
16GO:0006099: tricarboxylic acid cycle9.13E-05
17GO:0002237: response to molecule of bacterial origin1.45E-04
18GO:0031204: posttranslational protein targeting to membrane, translocation1.74E-04
19GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.74E-04
20GO:0009838: abscission1.74E-04
21GO:0032527: protein exit from endoplasmic reticulum1.74E-04
22GO:0015865: purine nucleotide transport1.74E-04
23GO:0016998: cell wall macromolecule catabolic process2.53E-04
24GO:0009626: plant-type hypersensitive response2.60E-04
25GO:0009651: response to salt stress2.63E-04
26GO:0071398: cellular response to fatty acid2.93E-04
27GO:0010581: regulation of starch biosynthetic process2.93E-04
28GO:0008652: cellular amino acid biosynthetic process2.93E-04
29GO:0010359: regulation of anion channel activity2.93E-04
30GO:0009553: embryo sac development2.94E-04
31GO:0009306: protein secretion3.31E-04
32GO:0046902: regulation of mitochondrial membrane permeability4.23E-04
33GO:0072334: UDP-galactose transmembrane transport4.23E-04
34GO:0042742: defense response to bacterium4.94E-04
35GO:0006097: glyoxylate cycle7.14E-04
36GO:0007029: endoplasmic reticulum organization7.14E-04
37GO:0006465: signal peptide processing7.14E-04
38GO:0046283: anthocyanin-containing compound metabolic process7.14E-04
39GO:0046686: response to cadmium ion1.07E-03
40GO:0006102: isocitrate metabolic process1.40E-03
41GO:0010204: defense response signaling pathway, resistance gene-independent1.59E-03
42GO:0006886: intracellular protein transport1.79E-03
43GO:0015780: nucleotide-sugar transport1.80E-03
44GO:0009835: fruit ripening1.80E-03
45GO:0010112: regulation of systemic acquired resistance1.80E-03
46GO:0051555: flavonol biosynthetic process2.23E-03
47GO:0009870: defense response signaling pathway, resistance gene-dependent2.23E-03
48GO:0006032: chitin catabolic process2.23E-03
49GO:0009408: response to heat2.24E-03
50GO:0006979: response to oxidative stress2.44E-03
51GO:0072593: reactive oxygen species metabolic process2.46E-03
52GO:0008152: metabolic process2.54E-03
53GO:0010075: regulation of meristem growth2.94E-03
54GO:0018105: peptidyl-serine phosphorylation2.94E-03
55GO:0006108: malate metabolic process2.94E-03
56GO:0009934: regulation of meristem structural organization3.19E-03
57GO:0009863: salicylic acid mediated signaling pathway3.98E-03
58GO:0030433: ubiquitin-dependent ERAD pathway4.83E-03
59GO:0009693: ethylene biosynthetic process5.13E-03
60GO:0009411: response to UV5.13E-03
61GO:0009617: response to bacterium5.86E-03
62GO:0010118: stomatal movement6.05E-03
63GO:0000413: protein peptidyl-prolyl isomerization6.05E-03
64GO:0010197: polar nucleus fusion6.38E-03
65GO:0048868: pollen tube development6.38E-03
66GO:0015986: ATP synthesis coupled proton transport6.70E-03
67GO:0010193: response to ozone7.38E-03
68GO:0016032: viral process7.72E-03
69GO:0030163: protein catabolic process8.07E-03
70GO:0009567: double fertilization forming a zygote and endosperm8.43E-03
71GO:0009615: response to virus9.54E-03
72GO:0001666: response to hypoxia9.54E-03
73GO:0046777: protein autophosphorylation1.01E-02
74GO:0006906: vesicle fusion1.03E-02
75GO:0006950: response to stress1.07E-02
76GO:0045454: cell redox homeostasis1.13E-02
77GO:0008219: cell death1.15E-02
78GO:0006499: N-terminal protein myristoylation1.23E-02
79GO:0010119: regulation of stomatal movement1.27E-02
80GO:0048364: root development1.45E-02
81GO:0006839: mitochondrial transport1.49E-02
82GO:0006887: exocytosis1.54E-02
83GO:0015031: protein transport1.54E-02
84GO:0051707: response to other organism1.63E-02
85GO:0008283: cell proliferation1.63E-02
86GO:0006855: drug transmembrane transport1.81E-02
87GO:0031347: regulation of defense response1.86E-02
88GO:0009846: pollen germination1.91E-02
89GO:0006486: protein glycosylation2.01E-02
90GO:0051603: proteolysis involved in cellular protein catabolic process2.06E-02
91GO:0009909: regulation of flower development2.16E-02
92GO:0048367: shoot system development2.31E-02
93GO:0009738: abscisic acid-activated signaling pathway2.40E-02
94GO:0009620: response to fungus2.42E-02
95GO:0009555: pollen development2.48E-02
96GO:0009611: response to wounding2.53E-02
97GO:0009624: response to nematode2.58E-02
98GO:0035556: intracellular signal transduction2.62E-02
99GO:0055085: transmembrane transport3.14E-02
100GO:0007166: cell surface receptor signaling pathway4.19E-02
101GO:0050832: defense response to fungus4.43E-02
102GO:0006508: proteolysis4.62E-02
103GO:0009414: response to water deprivation4.87E-02
RankGO TermAdjusted P value
1GO:0008752: FMN reductase activity0.00E+00
2GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
3GO:0005212: structural constituent of eye lens0.00E+00
4GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity0.00E+00
5GO:0052873: FMN reductase (NADPH) activity0.00E+00
6GO:0004360: glutamine-fructose-6-phosphate transaminase (isomerizing) activity0.00E+00
7GO:0051082: unfolded protein binding3.53E-10
8GO:0005509: calcium ion binding5.10E-07
9GO:0005460: UDP-glucose transmembrane transporter activity2.69E-06
10GO:0005459: UDP-galactose transmembrane transporter activity8.65E-06
11GO:0097367: carbohydrate derivative binding7.23E-05
12GO:0080042: ADP-glucose pyrophosphohydrolase activity7.23E-05
13GO:0048037: cofactor binding7.23E-05
14GO:0080041: ADP-ribose pyrophosphohydrolase activity1.74E-04
15GO:0017110: nucleoside-diphosphatase activity1.74E-04
16GO:0004775: succinate-CoA ligase (ADP-forming) activity1.74E-04
17GO:0008517: folic acid transporter activity1.74E-04
18GO:0004776: succinate-CoA ligase (GDP-forming) activity1.74E-04
19GO:0000030: mannosyltransferase activity2.93E-04
20GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.93E-04
21GO:0003756: protein disulfide isomerase activity3.31E-04
22GO:0019201: nucleotide kinase activity4.23E-04
23GO:0004449: isocitrate dehydrogenase (NAD+) activity4.23E-04
24GO:0010178: IAA-amino acid conjugate hydrolase activity4.23E-04
25GO:0005524: ATP binding4.24E-04
26GO:0005086: ARF guanyl-nucleotide exchange factor activity5.65E-04
27GO:0016887: ATPase activity6.81E-04
28GO:0005471: ATP:ADP antiporter activity7.14E-04
29GO:0047631: ADP-ribose diphosphatase activity7.14E-04
30GO:0009931: calcium-dependent protein serine/threonine kinase activity8.15E-04
31GO:0004683: calmodulin-dependent protein kinase activity8.59E-04
32GO:0016615: malate dehydrogenase activity8.73E-04
33GO:0000210: NAD+ diphosphatase activity8.73E-04
34GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.46E-04
35GO:0030060: L-malate dehydrogenase activity1.04E-03
36GO:0004017: adenylate kinase activity1.04E-03
37GO:0008121: ubiquinol-cytochrome-c reductase activity1.21E-03
38GO:0030246: carbohydrate binding1.30E-03
39GO:0047893: flavonol 3-O-glucosyltransferase activity1.40E-03
40GO:0005507: copper ion binding1.41E-03
41GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.80E-03
42GO:0051287: NAD binding1.82E-03
43GO:0004568: chitinase activity2.23E-03
44GO:0008559: xenobiotic-transporting ATPase activity2.46E-03
45GO:0080043: quercetin 3-O-glucosyltransferase activity2.62E-03
46GO:0080044: quercetin 7-O-glucosyltransferase activity2.62E-03
47GO:0031072: heat shock protein binding2.94E-03
48GO:0015114: phosphate ion transmembrane transporter activity2.94E-03
49GO:0008266: poly(U) RNA binding3.19E-03
50GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.19E-03
51GO:0008061: chitin binding3.44E-03
52GO:0016758: transferase activity, transferring hexosyl groups3.48E-03
53GO:0031418: L-ascorbic acid binding3.98E-03
54GO:0035251: UDP-glucosyltransferase activity4.54E-03
55GO:0004298: threonine-type endopeptidase activity4.54E-03
56GO:0008194: UDP-glycosyltransferase activity5.49E-03
57GO:0046933: proton-transporting ATP synthase activity, rotational mechanism6.38E-03
58GO:0016853: isomerase activity6.70E-03
59GO:0010181: FMN binding6.70E-03
60GO:0005516: calmodulin binding7.78E-03
61GO:0008483: transaminase activity8.79E-03
62GO:0008237: metallopeptidase activity8.79E-03
63GO:0008233: peptidase activity9.25E-03
64GO:0004222: metalloendopeptidase activity1.23E-02
65GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.27E-02
66GO:0003746: translation elongation factor activity1.36E-02
67GO:0000149: SNARE binding1.45E-02
68GO:0009055: electron carrier activity1.50E-02
69GO:0005484: SNAP receptor activity1.63E-02
70GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.81E-02
71GO:0016298: lipase activity2.06E-02
72GO:0031625: ubiquitin protein ligase binding2.16E-02
73GO:0008565: protein transporter activity3.44E-02
74GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.63E-02
75GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.52E-02
76GO:0042802: identical protein binding4.52E-02
RankGO TermAdjusted P value
1GO:0031205: endoplasmic reticulum Sec complex0.00E+00
2GO:0005784: Sec61 translocon complex0.00E+00
3GO:0005788: endoplasmic reticulum lumen1.21E-16
4GO:0005783: endoplasmic reticulum2.13E-11
5GO:0005773: vacuole6.29E-09
6GO:0005886: plasma membrane1.95E-08
7GO:0005774: vacuolar membrane7.98E-08
8GO:0005740: mitochondrial envelope9.44E-07
9GO:0009506: plasmodesma7.29E-06
10GO:0009507: chloroplast2.94E-05
11GO:0005787: signal peptidase complex7.23E-05
12GO:0030176: integral component of endoplasmic reticulum membrane1.64E-04
13GO:0031225: anchored component of membrane3.07E-04
14GO:0005618: cell wall3.90E-04
15GO:0005623: cell4.23E-04
16GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)5.65E-04
17GO:0010168: ER body8.73E-04
18GO:0030173: integral component of Golgi membrane1.04E-03
19GO:0031090: organelle membrane1.80E-03
20GO:0005829: cytosol1.96E-03
21GO:0000502: proteasome complex2.02E-03
22GO:0031012: extracellular matrix2.94E-03
23GO:0005750: mitochondrial respiratory chain complex III3.19E-03
24GO:0009505: plant-type cell wall3.39E-03
25GO:0005753: mitochondrial proton-transporting ATP synthase complex3.44E-03
26GO:0005739: mitochondrion3.77E-03
27GO:0005758: mitochondrial intermembrane space3.98E-03
28GO:0070469: respiratory chain4.26E-03
29GO:0005839: proteasome core complex4.54E-03
30GO:0005741: mitochondrial outer membrane4.54E-03
31GO:0005789: endoplasmic reticulum membrane4.58E-03
32GO:0048046: apoplast4.73E-03
33GO:0046658: anchored component of plasma membrane6.49E-03
34GO:0016592: mediator complex7.72E-03
35GO:0016020: membrane8.69E-03
36GO:0005622: intracellular9.61E-03
37GO:0000151: ubiquitin ligase complex1.15E-02
38GO:0000325: plant-type vacuole1.27E-02
39GO:0005743: mitochondrial inner membrane1.29E-02
40GO:0031201: SNARE complex1.54E-02
41GO:0043231: intracellular membrane-bounded organelle1.54E-02
42GO:0005747: mitochondrial respiratory chain complex I2.31E-02
43GO:0009705: plant-type vacuole membrane3.81E-02
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Gene type



Gene DE type