co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031564: transcription antitermination	0.00E+00
2	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
3	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0043419: urea catabolic process	0.00E+00
5	GO:0032499: detection of peptidoglycan	0.00E+00
6	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
7	GO:0006468: protein phosphorylation	5.32E-08
8	GO:0002221: pattern recognition receptor signaling pathway	2.06E-06
9	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.06E-06
10	GO:0000460: maturation of 5.8S rRNA	3.17E-05
11	GO:0080142: regulation of salicylic acid biosynthetic process	3.17E-05
12	GO:0060548: negative regulation of cell death	3.17E-05
13	GO:0045087: innate immune response	5.64E-05
14	GO:0000470: maturation of LSU-rRNA	7.50E-05
15	GO:0000911: cytokinesis by cell plate formation	1.04E-04
16	GO:0043985: histone H4-R3 methylation	2.09E-04
17	GO:0043687: post-translational protein modification	2.09E-04
18	GO:0006680: glucosylceramide catabolic process	2.09E-04
19	GO:0032491: detection of molecule of fungal origin	2.09E-04
20	GO:0042539: hypotonic salinity response	2.09E-04
21	GO:0009968: negative regulation of signal transduction	2.09E-04
22	GO:0006083: acetate metabolic process	2.09E-04
23	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	2.09E-04
24	GO:0009868: jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway	2.09E-04
25	GO:0043547: positive regulation of GTPase activity	2.09E-04
26	GO:0006422: aspartyl-tRNA aminoacylation	2.09E-04
27	GO:0006002: fructose 6-phosphate metabolic process	2.19E-04
28	GO:0030163: protein catabolic process	2.32E-04
29	GO:0046777: protein autophosphorylation	3.87E-04
30	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.66E-04
31	GO:0030010: establishment of cell polarity	4.66E-04
32	GO:0031349: positive regulation of defense response	4.66E-04
33	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	4.66E-04
34	GO:0008535: respiratory chain complex IV assembly	4.66E-04
35	GO:0042742: defense response to bacterium	4.97E-04
36	GO:1900140: regulation of seedling development	7.59E-04
37	GO:0007165: signal transduction	7.82E-04
38	GO:0000027: ribosomal large subunit assembly	8.63E-04
39	GO:0072583: clathrin-dependent endocytosis	1.08E-03
40	GO:0071323: cellular response to chitin	1.08E-03
41	GO:0006882: cellular zinc ion homeostasis	1.08E-03
42	GO:0001676: long-chain fatty acid metabolic process	1.08E-03
43	GO:0000187: activation of MAPK activity	1.08E-03
44	GO:0031348: negative regulation of defense response	1.13E-03
45	GO:0010227: floral organ abscission	1.23E-03
46	GO:0007112: male meiosis cytokinesis	1.44E-03
47	GO:0071219: cellular response to molecule of bacterial origin	1.44E-03
48	GO:2000038: regulation of stomatal complex development	1.44E-03
49	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.44E-03
50	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	1.44E-03
51	GO:0018279: protein N-linked glycosylation via asparagine	1.83E-03
52	GO:0031365: N-terminal protein amino acid modification	1.83E-03
53	GO:0006623: protein targeting to vacuole	1.94E-03
54	GO:0047484: regulation of response to osmotic stress	2.26E-03
55	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.71E-03
56	GO:0009612: response to mechanical stimulus	2.71E-03
57	GO:0006694: steroid biosynthetic process	2.71E-03
58	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.71E-03
59	GO:2000037: regulation of stomatal complex patterning	2.71E-03
60	GO:0046470: phosphatidylcholine metabolic process	3.20E-03
61	GO:0043090: amino acid import	3.20E-03
62	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.71E-03
63	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.71E-03
64	GO:0006875: cellular metal ion homeostasis	3.71E-03
65	GO:0006102: isocitrate metabolic process	3.71E-03
66	GO:0009817: defense response to fungus, incompatible interaction	3.88E-03
67	GO:0008219: cell death	3.88E-03
68	GO:0009880: embryonic pattern specification	4.24E-03
69	GO:0006261: DNA-dependent DNA replication	4.24E-03
70	GO:0006367: transcription initiation from RNA polymerase II promoter	4.24E-03
71	GO:0006972: hyperosmotic response	4.24E-03
72	GO:0006499: N-terminal protein myristoylation	4.28E-03
73	GO:0007166: cell surface receptor signaling pathway	4.50E-03
74	GO:0010468: regulation of gene expression	4.75E-03
75	GO:0006099: tricarboxylic acid cycle	5.13E-03
76	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.38E-03
77	GO:0042761: very long-chain fatty acid biosynthetic process	5.38E-03
78	GO:0071577: zinc II ion transmembrane transport	5.38E-03
79	GO:0006631: fatty acid metabolic process	5.84E-03
80	GO:0006897: endocytosis	5.84E-03
81	GO:0000103: sulfate assimilation	5.99E-03
82	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.28E-03
83	GO:0071365: cellular response to auxin stimulus	7.28E-03
84	GO:0006952: defense response	7.94E-03
85	GO:0010102: lateral root morphogenesis	7.96E-03
86	GO:0006807: nitrogen compound metabolic process	7.96E-03
87	GO:0010229: inflorescence development	7.96E-03
88	GO:0035556: intracellular signal transduction	8.27E-03
89	GO:0010200: response to chitin	9.07E-03
90	GO:0010030: positive regulation of seed germination	9.37E-03
91	GO:0070588: calcium ion transmembrane transport	9.37E-03
92	GO:0010053: root epidermal cell differentiation	9.37E-03
93	GO:0015031: protein transport	9.83E-03
94	GO:0006096: glycolytic process	1.01E-02
95	GO:0016310: phosphorylation	1.06E-02
96	GO:0009626: plant-type hypersensitive response	1.08E-02
97	GO:0010187: negative regulation of seed germination	1.09E-02
98	GO:0045454: cell redox homeostasis	1.09E-02
99	GO:0009620: response to fungus	1.11E-02
100	GO:0006886: intracellular protein transport	1.14E-02
101	GO:0043622: cortical microtubule organization	1.17E-02
102	GO:0061077: chaperone-mediated protein folding	1.25E-02
103	GO:0009814: defense response, incompatible interaction	1.33E-02
104	GO:0042127: regulation of cell proliferation	1.50E-02
105	GO:0009306: protein secretion	1.50E-02
106	GO:0042391: regulation of membrane potential	1.68E-02
107	GO:0008033: tRNA processing	1.68E-02
108	GO:0000413: protein peptidyl-prolyl isomerization	1.68E-02
109	GO:0006662: glycerol ether metabolic process	1.77E-02
110	GO:0010197: polar nucleus fusion	1.77E-02
111	GO:0010182: sugar mediated signaling pathway	1.77E-02
112	GO:0061025: membrane fusion	1.86E-02
113	GO:0009749: response to glucose	1.96E-02
114	GO:0006413: translational initiation	1.97E-02
115	GO:0010193: response to ozone	2.06E-02
116	GO:0000302: response to reactive oxygen species	2.06E-02
117	GO:0009734: auxin-activated signaling pathway	2.20E-02
118	GO:0009737: response to abscisic acid	2.38E-02
119	GO:0006470: protein dephosphorylation	2.42E-02
120	GO:0006904: vesicle docking involved in exocytosis	2.46E-02
121	GO:0008380: RNA splicing	2.52E-02
122	GO:0009617: response to bacterium	2.52E-02
123	GO:0016126: sterol biosynthetic process	2.67E-02
124	GO:0009607: response to biotic stimulus	2.78E-02
125	GO:0009627: systemic acquired resistance	2.89E-02
126	GO:0006970: response to osmotic stress	3.52E-02
127	GO:0009631: cold acclimation	3.58E-02
128	GO:0048527: lateral root development	3.58E-02
129	GO:0010119: regulation of stomatal movement	3.58E-02
130	GO:0006865: amino acid transport	3.70E-02
131	GO:0009867: jasmonic acid mediated signaling pathway	3.82E-02
132	GO:0034599: cellular response to oxidative stress	3.94E-02
133	GO:0080167: response to karrikin	4.04E-02
134	GO:0050832: defense response to fungus	4.13E-02
135	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.18E-02
136	GO:0030001: metal ion transport	4.19E-02
137	GO:0016192: vesicle-mediated transport	4.25E-02
138	GO:0006887: exocytosis	4.32E-02
139	GO:0006508: proteolysis	4.36E-02
140	GO:0051707: response to other organism	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009039: urease activity	0.00E+00
2	GO:0004631: phosphomevalonate kinase activity	0.00E+00
3	GO:0033746: histone demethylase activity (H3-R2 specific)	0.00E+00
4	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
5	GO:2001080: chitosan binding	0.00E+00
6	GO:0033749: histone demethylase activity (H4-R3 specific)	0.00E+00
7	GO:0004164: diphthine synthase activity	0.00E+00
8	GO:0016301: kinase activity	7.18E-10
9	GO:0005524: ATP binding	2.74E-09
10	GO:0004674: protein serine/threonine kinase activity	3.54E-06
11	GO:0004672: protein kinase activity	1.35E-05
12	GO:0004190: aspartic-type endopeptidase activity	3.54E-05
13	GO:0003872: 6-phosphofructokinase activity	1.37E-04
14	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.76E-04
15	GO:0004348: glucosylceramidase activity	2.09E-04
16	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.09E-04
17	GO:0042134: rRNA primary transcript binding	2.09E-04
18	GO:0032050: clathrin heavy chain binding	2.09E-04
19	GO:0003987: acetate-CoA ligase activity	2.09E-04
20	GO:0015085: calcium ion transmembrane transporter activity	2.09E-04
21	GO:0004815: aspartate-tRNA ligase activity	2.09E-04
22	GO:0005516: calmodulin binding	2.48E-04
23	GO:0038199: ethylene receptor activity	4.66E-04
24	GO:0043021: ribonucleoprotein complex binding	4.66E-04
25	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.94E-04
26	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	7.59E-04
27	GO:0008253: 5'-nucleotidase activity	7.59E-04
28	GO:0004148: dihydrolipoyl dehydrogenase activity	7.59E-04
29	GO:0016151: nickel cation binding	7.59E-04
30	GO:0005528: FK506 binding	8.63E-04
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.02E-03
32	GO:0004707: MAP kinase activity	1.04E-03
33	GO:0033612: receptor serine/threonine kinase binding	1.04E-03
34	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.08E-03
35	GO:0051740: ethylene binding	1.08E-03
36	GO:0019199: transmembrane receptor protein kinase activity	1.44E-03
37	GO:0004930: G-protein coupled receptor activity	1.44E-03
38	GO:0004576: oligosaccharyl transferase activity	1.44E-03
39	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.83E-03
40	GO:0004040: amidase activity	1.83E-03
41	GO:0000166: nucleotide binding	1.88E-03
42	GO:0016746: transferase activity, transferring acyl groups	1.97E-03
43	GO:0031593: polyubiquitin binding	2.26E-03
44	GO:0016208: AMP binding	2.26E-03
45	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.66E-03
46	GO:0102391: decanoate--CoA ligase activity	2.71E-03
47	GO:0004656: procollagen-proline 4-dioxygenase activity	2.71E-03
48	GO:0008320: protein transmembrane transporter activity	3.20E-03
49	GO:0004467: long-chain fatty acid-CoA ligase activity	3.20E-03
50	GO:0008235: metalloexopeptidase activity	3.20E-03
51	GO:0004708: MAP kinase kinase activity	3.71E-03
52	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.24E-03
53	GO:0004630: phospholipase D activity	4.24E-03
54	GO:0005515: protein binding	4.38E-03
55	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.36E-03
56	GO:0005509: calcium ion binding	5.62E-03
57	GO:0004713: protein tyrosine kinase activity	5.99E-03
58	GO:0004673: protein histidine kinase activity	5.99E-03
59	GO:0008794: arsenate reductase (glutaredoxin) activity	6.62E-03
60	GO:0004177: aminopeptidase activity	6.62E-03
61	GO:0008559: xenobiotic-transporting ATPase activity	6.62E-03
62	GO:0005388: calcium-transporting ATPase activity	7.96E-03
63	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.96E-03
64	GO:0000155: phosphorelay sensor kinase activity	7.96E-03
65	GO:0016298: lipase activity	8.83E-03
66	GO:0008061: chitin binding	9.37E-03
67	GO:0003712: transcription cofactor activity	9.37E-03
68	GO:0030552: cAMP binding	9.37E-03
69	GO:0030553: cGMP binding	9.37E-03
70	GO:0031418: L-ascorbic acid binding	1.09E-02
71	GO:0005385: zinc ion transmembrane transporter activity	1.09E-02
72	GO:0003954: NADH dehydrogenase activity	1.09E-02
73	GO:0043130: ubiquitin binding	1.09E-02
74	GO:0046872: metal ion binding	1.13E-02
75	GO:0005216: ion channel activity	1.17E-02
76	GO:0015035: protein disulfide oxidoreductase activity	1.25E-02
77	GO:0047134: protein-disulfide reductase activity	1.59E-02
78	GO:0030551: cyclic nucleotide binding	1.68E-02
79	GO:0005249: voltage-gated potassium channel activity	1.68E-02
80	GO:0004527: exonuclease activity	1.77E-02
81	GO:0046873: metal ion transmembrane transporter activity	1.77E-02
82	GO:0010181: FMN binding	1.86E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	1.86E-02
84	GO:0004872: receptor activity	1.96E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-02
86	GO:0003743: translation initiation factor activity	2.47E-02
87	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.89E-02
88	GO:0004806: triglyceride lipase activity	3.00E-02
89	GO:0004683: calmodulin-dependent protein kinase activity	3.00E-02
90	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.23E-02
91	GO:0005096: GTPase activator activity	3.34E-02
92	GO:0050897: cobalt ion binding	3.58E-02
93	GO:0043531: ADP binding	3.58E-02
94	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.82E-02
95	GO:0003697: single-stranded DNA binding	3.82E-02
96	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.94E-02
97	GO:0042393: histone binding	4.19E-02
98	GO:0051539: 4 iron, 4 sulfur cluster binding	4.19E-02
99	GO:0005484: SNAP receptor activity	4.57E-02
100	GO:0004185: serine-type carboxypeptidase activity	4.57E-02
101	GO:0005198: structural molecule activity	4.97E-02
102	GO:0015293: symporter activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005886: plasma membrane	3.60E-09
3	GO:0005945: 6-phosphofructokinase complex	5.09E-05
4	GO:0030687: preribosome, large subunit precursor	1.37E-04
5	GO:0045252: oxoglutarate dehydrogenase complex	2.09E-04
6	GO:0009514: glyoxysome	2.19E-04
7	GO:0016021: integral component of membrane	3.02E-04
8	GO:0017119: Golgi transport complex	3.71E-04
9	GO:0031304: intrinsic component of mitochondrial inner membrane	4.66E-04
10	GO:0070545: PeBoW complex	4.66E-04
11	GO:0005901: caveola	4.66E-04
12	GO:0046861: glyoxysomal membrane	7.59E-04
13	GO:0070062: extracellular exosome	1.08E-03
14	GO:0009898: cytoplasmic side of plasma membrane	1.44E-03
15	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.46E-03
16	GO:0008250: oligosaccharyltransferase complex	1.83E-03
17	GO:0009504: cell plate	1.94E-03
18	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.20E-03
19	GO:0030131: clathrin adaptor complex	3.71E-03
20	GO:0019005: SCF ubiquitin ligase complex	3.88E-03
21	GO:0005887: integral component of plasma membrane	5.07E-03
22	GO:0030665: clathrin-coated vesicle membrane	5.38E-03
23	GO:0005783: endoplasmic reticulum	5.40E-03
24	GO:0030125: clathrin vesicle coat	5.99E-03
25	GO:0005829: cytosol	7.76E-03
26	GO:0005834: heterotrimeric G-protein complex	1.08E-02
27	GO:0005905: clathrin-coated pit	1.25E-02
28	GO:0005789: endoplasmic reticulum membrane	1.35E-02
29	GO:0016020: membrane	1.99E-02
30	GO:0000145: exocyst	2.15E-02
31	GO:0032580: Golgi cisterna membrane	2.36E-02
32	GO:0005737: cytoplasm	2.48E-02
33	GO:0000932: P-body	2.67E-02
34	GO:0005777: peroxisome	3.48E-02
35	GO:0000325: plant-type vacuole	3.58E-02
36	GO:0031902: late endosome membrane	4.32E-02