Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032499: detection of peptidoglycan0.00E+00
2GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
3GO:0072660: maintenance of protein location in plasma membrane0.00E+00
4GO:0019428: allantoin biosynthetic process0.00E+00
5GO:0042742: defense response to bacterium2.20E-13
6GO:0006468: protein phosphorylation1.01E-08
7GO:0031349: positive regulation of defense response1.55E-06
8GO:0006952: defense response2.01E-06
9GO:0009617: response to bacterium7.48E-06
10GO:0009751: response to salicylic acid7.93E-06
11GO:0009626: plant-type hypersensitive response1.22E-05
12GO:0015696: ammonium transport1.33E-05
13GO:0050832: defense response to fungus1.74E-05
14GO:0080142: regulation of salicylic acid biosynthetic process2.45E-05
15GO:0060548: negative regulation of cell death2.45E-05
16GO:0072488: ammonium transmembrane transport2.45E-05
17GO:0071219: cellular response to molecule of bacterial origin2.45E-05
18GO:0070588: calcium ion transmembrane transport2.53E-05
19GO:0031348: negative regulation of defense response5.67E-05
20GO:0009759: indole glucosinolate biosynthetic process5.89E-05
21GO:0010942: positive regulation of cell death5.89E-05
22GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.40E-04
23GO:0010120: camalexin biosynthetic process1.75E-04
24GO:0032491: detection of molecule of fungal origin1.80E-04
25GO:0060862: negative regulation of floral organ abscission1.80E-04
26GO:0006144: purine nucleobase metabolic process1.80E-04
27GO:0001560: regulation of cell growth by extracellular stimulus1.80E-04
28GO:0019628: urate catabolic process1.80E-04
29GO:0051245: negative regulation of cellular defense response1.80E-04
30GO:0009609: response to symbiotic bacterium1.80E-04
31GO:0046938: phytochelatin biosynthetic process1.80E-04
32GO:0006643: membrane lipid metabolic process1.80E-04
33GO:0055081: anion homeostasis1.80E-04
34GO:0010112: regulation of systemic acquired resistance2.13E-04
35GO:0010200: response to chitin2.43E-04
36GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.55E-04
37GO:0009627: systemic acquired resistance2.80E-04
38GO:0043069: negative regulation of programmed cell death3.00E-04
39GO:0009817: defense response to fungus, incompatible interaction3.44E-04
40GO:0052544: defense response by callose deposition in cell wall3.48E-04
41GO:0002221: pattern recognition receptor signaling pathway4.05E-04
42GO:0080151: positive regulation of salicylic acid mediated signaling pathway4.05E-04
43GO:0080185: effector dependent induction by symbiont of host immune response4.05E-04
44GO:0010618: aerenchyma formation4.05E-04
45GO:0080181: lateral root branching4.05E-04
46GO:0051258: protein polymerization4.05E-04
47GO:0008535: respiratory chain complex IV assembly4.05E-04
48GO:0007166: cell surface receptor signaling pathway5.87E-04
49GO:0051707: response to other organism6.46E-04
50GO:0072661: protein targeting to plasma membrane6.61E-04
51GO:0006517: protein deglycosylation6.61E-04
52GO:0015695: organic cation transport6.61E-04
53GO:0055074: calcium ion homeostasis6.61E-04
54GO:0042344: indole glucosinolate catabolic process6.61E-04
55GO:1900140: regulation of seedling development6.61E-04
56GO:0051289: protein homotetramerization9.45E-04
57GO:0006515: misfolded or incompletely synthesized protein catabolic process9.45E-04
58GO:0000187: activation of MAPK activity9.45E-04
59GO:0043207: response to external biotic stimulus9.45E-04
60GO:0010148: transpiration9.45E-04
61GO:0006516: glycoprotein catabolic process9.45E-04
62GO:0015700: arsenite transport9.45E-04
63GO:0006612: protein targeting to membrane9.45E-04
64GO:0071323: cellular response to chitin9.45E-04
65GO:0010188: response to microbial phytotoxin1.25E-03
66GO:0010363: regulation of plant-type hypersensitive response1.25E-03
67GO:0010508: positive regulation of autophagy1.25E-03
68GO:0009620: response to fungus1.29E-03
69GO:0061025: membrane fusion1.47E-03
70GO:0006623: protein targeting to vacuole1.57E-03
71GO:0031365: N-terminal protein amino acid modification1.59E-03
72GO:0000304: response to singlet oxygen1.59E-03
73GO:0046283: anthocyanin-containing compound metabolic process1.59E-03
74GO:0010193: response to ozone1.68E-03
75GO:0006886: intracellular protein transport1.76E-03
76GO:0030163: protein catabolic process1.91E-03
77GO:0060918: auxin transport1.96E-03
78GO:0009117: nucleotide metabolic process1.96E-03
79GO:0010310: regulation of hydrogen peroxide metabolic process2.35E-03
80GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.35E-03
81GO:0000911: cytokinesis by cell plate formation2.35E-03
82GO:0009612: response to mechanical stimulus2.35E-03
83GO:0006694: steroid biosynthetic process2.35E-03
84GO:0009816: defense response to bacterium, incompatible interaction2.56E-03
85GO:0010044: response to aluminum ion2.77E-03
86GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.77E-03
87GO:0010161: red light signaling pathway2.77E-03
88GO:0009610: response to symbiotic fungus2.77E-03
89GO:0046470: phosphatidylcholine metabolic process2.77E-03
90GO:0071446: cellular response to salicylic acid stimulus2.77E-03
91GO:1900056: negative regulation of leaf senescence2.77E-03
92GO:0070370: cellular heat acclimation2.77E-03
93GO:0008219: cell death3.15E-03
94GO:0006102: isocitrate metabolic process3.21E-03
95GO:0009787: regulation of abscisic acid-activated signaling pathway3.21E-03
96GO:0030162: regulation of proteolysis3.21E-03
97GO:0006605: protein targeting3.21E-03
98GO:0010119: regulation of stomatal movement3.63E-03
99GO:0010204: defense response signaling pathway, resistance gene-independent3.67E-03
100GO:2000031: regulation of salicylic acid mediated signaling pathway3.67E-03
101GO:0009699: phenylpropanoid biosynthetic process3.67E-03
102GO:0006002: fructose 6-phosphate metabolic process3.67E-03
103GO:0046685: response to arsenic-containing substance4.15E-03
104GO:1900426: positive regulation of defense response to bacterium4.65E-03
105GO:0048268: clathrin coat assembly4.65E-03
106GO:0006887: exocytosis4.72E-03
107GO:0007165: signal transduction5.07E-03
108GO:0010215: cellulose microfibril organization5.18E-03
109GO:0006032: chitin catabolic process5.18E-03
110GO:0009737: response to abscisic acid5.30E-03
111GO:0048229: gametophyte development5.72E-03
112GO:0009682: induced systemic resistance5.72E-03
113GO:0031347: regulation of defense response6.20E-03
114GO:0012501: programmed cell death6.28E-03
115GO:0080167: response to karrikin6.63E-03
116GO:0015031: protein transport6.77E-03
117GO:0016192: vesicle-mediated transport7.07E-03
118GO:0034605: cellular response to heat7.46E-03
119GO:0042343: indole glucosinolate metabolic process8.08E-03
120GO:0009863: salicylic acid mediated signaling pathway9.37E-03
121GO:0080147: root hair cell development9.37E-03
122GO:0009742: brassinosteroid mediated signaling pathway1.04E-02
123GO:0016998: cell wall macromolecule catabolic process1.07E-02
124GO:0098542: defense response to other organism1.07E-02
125GO:0048278: vesicle docking1.07E-02
126GO:0006629: lipid metabolic process1.09E-02
127GO:0009814: defense response, incompatible interaction1.14E-02
128GO:2000022: regulation of jasmonic acid mediated signaling pathway1.14E-02
129GO:0009753: response to jasmonic acid1.19E-02
130GO:0009625: response to insect1.22E-02
131GO:0009306: protein secretion1.29E-02
132GO:0000413: protein peptidyl-prolyl isomerization1.44E-02
133GO:0010051: xylem and phloem pattern formation1.44E-02
134GO:0010197: polar nucleus fusion1.52E-02
135GO:0006979: response to oxidative stress1.62E-02
136GO:0010183: pollen tube guidance1.68E-02
137GO:0002229: defense response to oomycetes1.77E-02
138GO:0000302: response to reactive oxygen species1.77E-02
139GO:0006891: intra-Golgi vesicle-mediated transport1.77E-02
140GO:0006470: protein dephosphorylation1.95E-02
141GO:0006904: vesicle docking involved in exocytosis2.11E-02
142GO:0009615: response to virus2.30E-02
143GO:0001666: response to hypoxia2.30E-02
144GO:0009607: response to biotic stimulus2.39E-02
145GO:0006906: vesicle fusion2.48E-02
146GO:0006888: ER to Golgi vesicle-mediated transport2.58E-02
147GO:0016049: cell growth2.68E-02
148GO:0010311: lateral root formation2.87E-02
149GO:0009407: toxin catabolic process2.97E-02
150GO:0009723: response to ethylene3.06E-02
151GO:0006508: proteolysis3.07E-02
152GO:0009631: cold acclimation3.08E-02
153GO:0009867: jasmonic acid mediated signaling pathway3.28E-02
154GO:0045087: innate immune response3.28E-02
155GO:0006099: tricarboxylic acid cycle3.39E-02
156GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.39E-02
157GO:0046777: protein autophosphorylation3.50E-02
158GO:0009651: response to salt stress3.55E-02
159GO:0044550: secondary metabolite biosynthetic process3.56E-02
160GO:0006897: endocytosis3.71E-02
161GO:0045892: negative regulation of transcription, DNA-templated3.97E-02
162GO:0009636: response to toxic substance4.27E-02
163GO:0000165: MAPK cascade4.50E-02
164GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.50E-02
165GO:0010224: response to UV-B4.98E-02
RankGO TermAdjusted P value
1GO:2001080: chitosan binding0.00E+00
2GO:0033971: hydroxyisourate hydrolase activity0.00E+00
3GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
4GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
5GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
6GO:0016301: kinase activity5.11E-10
7GO:0004674: protein serine/threonine kinase activity1.54E-07
8GO:0005524: ATP binding2.15E-07
9GO:0005388: calcium-transporting ATPase activity1.69E-05
10GO:0008519: ammonium transmembrane transporter activity5.89E-05
11GO:0004656: procollagen-proline 4-dioxygenase activity8.20E-05
12GO:0004714: transmembrane receptor protein tyrosine kinase activity1.40E-04
13GO:0005516: calmodulin binding1.45E-04
14GO:1901149: salicylic acid binding1.80E-04
15GO:0015085: calcium ion transmembrane transporter activity1.80E-04
16GO:0046870: cadmium ion binding1.80E-04
17GO:0015446: ATPase-coupled arsenite transmembrane transporter activity1.80E-04
18GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity1.80E-04
19GO:0071992: phytochelatin transmembrane transporter activity1.80E-04
20GO:0004806: triglyceride lipase activity3.01E-04
21GO:0004385: guanylate kinase activity4.05E-04
22GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.28E-04
23GO:0004190: aspartic-type endopeptidase activity5.74E-04
24GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity6.61E-04
25GO:0004148: dihydrolipoyl dehydrogenase activity6.61E-04
26GO:0004672: protein kinase activity7.25E-04
27GO:0033612: receptor serine/threonine kinase binding8.51E-04
28GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity9.45E-04
29GO:0004449: isocitrate dehydrogenase (NAD+) activity9.45E-04
30GO:0035529: NADH pyrophosphatase activity9.45E-04
31GO:0019199: transmembrane receptor protein kinase activity1.25E-03
32GO:0043495: protein anchor1.25E-03
33GO:0030276: clathrin binding1.37E-03
34GO:0047631: ADP-ribose diphosphatase activity1.59E-03
35GO:0005546: phosphatidylinositol-4,5-bisphosphate binding1.59E-03
36GO:0000210: NAD+ diphosphatase activity1.96E-03
37GO:0004029: aldehyde dehydrogenase (NAD) activity1.96E-03
38GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.16E-03
39GO:0004602: glutathione peroxidase activity2.35E-03
40GO:0008235: metalloexopeptidase activity2.77E-03
41GO:0003872: 6-phosphofructokinase activity2.77E-03
42GO:0030247: polysaccharide binding2.84E-03
43GO:0004708: MAP kinase kinase activity3.21E-03
44GO:0004630: phospholipase D activity3.67E-03
45GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.67E-03
46GO:0005509: calcium ion binding3.87E-03
47GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.98E-03
48GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity4.65E-03
49GO:0005484: SNAP receptor activity5.12E-03
50GO:0004568: chitinase activity5.18E-03
51GO:0005545: 1-phosphatidylinositol binding5.18E-03
52GO:0004713: protein tyrosine kinase activity5.18E-03
53GO:0004177: aminopeptidase activity5.72E-03
54GO:0008559: xenobiotic-transporting ATPase activity5.72E-03
55GO:0005262: calcium channel activity6.86E-03
56GO:0016298: lipase activity7.14E-03
57GO:0031625: ubiquitin protein ligase binding7.64E-03
58GO:0008061: chitin binding8.08E-03
59GO:0003712: transcription cofactor activity8.08E-03
60GO:0031418: L-ascorbic acid binding9.37E-03
61GO:0004722: protein serine/threonine phosphatase activity9.37E-03
62GO:0005515: protein binding1.06E-02
63GO:0004707: MAP kinase activity1.07E-02
64GO:0008810: cellulase activity1.22E-02
65GO:0008565: protein transporter activity1.48E-02
66GO:0046872: metal ion binding2.31E-02
67GO:0004721: phosphoprotein phosphatase activity2.58E-02
68GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.77E-02
69GO:0043531: ADP binding2.90E-02
70GO:0050897: cobalt ion binding3.08E-02
71GO:0000149: SNARE binding3.50E-02
72GO:0042393: histone binding3.60E-02
73GO:0004364: glutathione transferase activity3.82E-02
74GO:0042803: protein homodimerization activity4.10E-02
75GO:0004871: signal transducer activity4.10E-02
76GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.22E-02
77GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.39E-02
78GO:0051287: NAD binding4.50E-02
79GO:0016787: hydrolase activity4.89E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane4.28E-12
2GO:0016021: integral component of membrane2.26E-06
3GO:0030665: clathrin-coated vesicle membrane6.19E-06
4GO:0005887: integral component of plasma membrane1.58E-04
5GO:0031234: extrinsic component of cytoplasmic side of plasma membrane1.80E-04
6GO:0017119: Golgi transport complex3.00E-04
7GO:0005901: caveola4.05E-04
8GO:0070062: extracellular exosome9.45E-04
9GO:0009504: cell plate1.57E-03
10GO:0005945: 6-phosphofructokinase complex1.59E-03
11GO:0000164: protein phosphatase type 1 complex1.59E-03
12GO:0009506: plasmodesma2.71E-03
13GO:0030131: clathrin adaptor complex3.21E-03
14GO:0031902: late endosome membrane4.72E-03
15GO:0005795: Golgi stack8.08E-03
16GO:0005783: endoplasmic reticulum8.21E-03
17GO:0005905: clathrin-coated pit1.07E-02
18GO:0031225: anchored component of membrane1.08E-02
19GO:0005802: trans-Golgi network1.13E-02
20GO:0005774: vacuolar membrane1.36E-02
21GO:0030136: clathrin-coated vesicle1.37E-02
22GO:0005794: Golgi apparatus1.46E-02
23GO:0000145: exocyst1.85E-02
24GO:0005788: endoplasmic reticulum lumen2.39E-02
25GO:0005829: cytosol2.53E-02
26GO:0019005: SCF ubiquitin ligase complex2.77E-02
27GO:0000151: ubiquitin ligase complex2.77E-02
28GO:0000325: plant-type vacuole3.08E-02
29GO:0031201: SNARE complex3.71E-02
30GO:0090406: pollen tube3.93E-02
31GO:0005768: endosome4.72E-02
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Gene type



Gene DE type