Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006792: regulation of sulfur utilization0.00E+00
2GO:0010200: response to chitin8.49E-06
3GO:0009751: response to salicylic acid1.94E-05
4GO:0033481: galacturonate biosynthetic process5.94E-05
5GO:0080164: regulation of nitric oxide metabolic process5.94E-05
6GO:0055063: sulfate ion homeostasis5.94E-05
7GO:0046500: S-adenosylmethionine metabolic process5.94E-05
8GO:0071497: cellular response to freezing1.44E-04
9GO:0051592: response to calcium ion1.44E-04
10GO:2000022: regulation of jasmonic acid mediated signaling pathway2.14E-04
11GO:0010581: regulation of starch biosynthetic process2.46E-04
12GO:0009753: response to jasmonic acid2.55E-04
13GO:0019722: calcium-mediated signaling2.55E-04
14GO:0000271: polysaccharide biosynthetic process3.00E-04
15GO:0009741: response to brassinosteroid3.24E-04
16GO:0009873: ethylene-activated signaling pathway3.43E-04
17GO:0006357: regulation of transcription from RNA polymerase II promoter3.57E-04
18GO:0030154: cell differentiation3.58E-04
19GO:0046345: abscisic acid catabolic process4.78E-04
20GO:0009828: plant-type cell wall loosening4.83E-04
21GO:0007267: cell-cell signaling5.12E-04
22GO:0010438: cellular response to sulfur starvation6.05E-04
23GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.05E-04
24GO:0009164: nucleoside catabolic process6.05E-04
25GO:0006544: glycine metabolic process6.05E-04
26GO:0009826: unidimensional cell growth7.31E-04
27GO:0060918: auxin transport7.40E-04
28GO:0006563: L-serine metabolic process7.40E-04
29GO:0009612: response to mechanical stimulus8.82E-04
30GO:0009723: response to ethylene9.17E-04
31GO:0051510: regulation of unidimensional cell growth1.03E-03
32GO:0010038: response to metal ion1.03E-03
33GO:0050829: defense response to Gram-negative bacterium1.03E-03
34GO:0042542: response to hydrogen peroxide1.13E-03
35GO:0010439: regulation of glucosinolate biosynthetic process1.18E-03
36GO:0030162: regulation of proteolysis1.18E-03
37GO:0044030: regulation of DNA methylation1.35E-03
38GO:2000031: regulation of salicylic acid mediated signaling pathway1.35E-03
39GO:0010099: regulation of photomorphogenesis1.35E-03
40GO:0048574: long-day photoperiodism, flowering1.35E-03
41GO:0031347: regulation of defense response1.42E-03
42GO:0009585: red, far-red light phototransduction1.57E-03
43GO:0009638: phototropism1.69E-03
44GO:0035999: tetrahydrofolate interconversion1.69E-03
45GO:0043069: negative regulation of programmed cell death1.88E-03
46GO:1903507: negative regulation of nucleic acid-templated transcription2.07E-03
47GO:0000038: very long-chain fatty acid metabolic process2.07E-03
48GO:0016024: CDP-diacylglycerol biosynthetic process2.27E-03
49GO:0018107: peptidyl-threonine phosphorylation2.47E-03
50GO:0006355: regulation of transcription, DNA-templated2.55E-03
51GO:0034605: cellular response to heat2.68E-03
52GO:0010143: cutin biosynthetic process2.68E-03
53GO:0009969: xyloglucan biosynthetic process2.89E-03
54GO:0009225: nucleotide-sugar metabolic process2.89E-03
55GO:0009738: abscisic acid-activated signaling pathway3.20E-03
56GO:0019953: sexual reproduction3.57E-03
57GO:0016998: cell wall macromolecule catabolic process3.81E-03
58GO:0010017: red or far-red light signaling pathway4.05E-03
59GO:0040007: growth4.30E-03
60GO:0009737: response to abscisic acid5.10E-03
61GO:0009958: positive gravitropism5.34E-03
62GO:0010268: brassinosteroid homeostasis5.34E-03
63GO:0045489: pectin biosynthetic process5.34E-03
64GO:0009646: response to absence of light5.61E-03
65GO:0009791: post-embryonic development5.89E-03
66GO:0016132: brassinosteroid biosynthetic process6.17E-03
67GO:0002229: defense response to oomycetes6.17E-03
68GO:0010583: response to cyclopentenone6.46E-03
69GO:0009639: response to red or far red light7.05E-03
70GO:0016125: sterol metabolic process7.05E-03
71GO:0019760: glucosinolate metabolic process7.05E-03
72GO:0046777: protein autophosphorylation7.77E-03
73GO:0009414: response to water deprivation7.91E-03
74GO:0001666: response to hypoxia7.97E-03
75GO:0045454: cell redox homeostasis8.70E-03
76GO:0016567: protein ubiquitination8.75E-03
77GO:0010411: xyloglucan metabolic process8.92E-03
78GO:0048573: photoperiodism, flowering8.92E-03
79GO:0016311: dephosphorylation9.25E-03
80GO:0009733: response to auxin9.44E-03
81GO:0048767: root hair elongation9.93E-03
82GO:0010218: response to far red light1.03E-02
83GO:0048527: lateral root development1.06E-02
84GO:0006629: lipid metabolic process1.07E-02
85GO:0045087: innate immune response1.13E-02
86GO:0016051: carbohydrate biosynthetic process1.13E-02
87GO:0009637: response to blue light1.13E-02
88GO:0009409: response to cold1.20E-02
89GO:0010114: response to red light1.35E-02
90GO:0046686: response to cadmium ion1.43E-02
91GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.55E-02
92GO:0009664: plant-type cell wall organization1.59E-02
93GO:0006486: protein glycosylation1.67E-02
94GO:0009909: regulation of flower development1.80E-02
95GO:0018105: peptidyl-serine phosphorylation2.19E-02
96GO:0045893: positive regulation of transcription, DNA-templated2.20E-02
97GO:0009742: brassinosteroid mediated signaling pathway2.24E-02
98GO:0042744: hydrogen peroxide catabolic process2.77E-02
99GO:0006351: transcription, DNA-templated2.78E-02
100GO:0006633: fatty acid biosynthetic process2.97E-02
101GO:0040008: regulation of growth3.07E-02
102GO:0009739: response to gibberellin3.44E-02
103GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.44E-02
104GO:0009658: chloroplast organization4.33E-02
105GO:0006970: response to osmotic stress4.56E-02
106GO:0009860: pollen tube growth4.56E-02
107GO:0048366: leaf development4.86E-02
RankGO TermAdjusted P value
1GO:0080132: fatty acid alpha-hydroxylase activity5.94E-05
2GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.59E-04
3GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.91E-04
4GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.46E-04
5GO:0044212: transcription regulatory region DNA binding3.05E-04
6GO:0033843: xyloglucan 6-xylosyltransferase activity3.57E-04
7GO:0050378: UDP-glucuronate 4-epimerase activity4.78E-04
8GO:0004372: glycine hydroxymethyltransferase activity6.05E-04
9GO:0035252: UDP-xylosyltransferase activity7.40E-04
10GO:0010427: abscisic acid binding7.40E-04
11GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.40E-04
12GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.40E-04
13GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides8.82E-04
14GO:0043565: sequence-specific DNA binding1.46E-03
15GO:0004864: protein phosphatase inhibitor activity1.88E-03
16GO:0016758: transferase activity, transferring hexosyl groups2.70E-03
17GO:0003712: transcription cofactor activity2.89E-03
18GO:0003714: transcription corepressor activity3.34E-03
19GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.05E-03
20GO:0003700: transcription factor activity, sequence-specific DNA binding4.44E-03
21GO:0004402: histone acetyltransferase activity5.07E-03
22GO:0005516: calmodulin binding5.59E-03
23GO:0004872: receptor activity5.89E-03
24GO:0003677: DNA binding6.75E-03
25GO:0016791: phosphatase activity7.05E-03
26GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity7.35E-03
27GO:0004806: triglyceride lipase activity8.92E-03
28GO:0004871: signal transducer activity9.11E-03
29GO:0004842: ubiquitin-protein transferase activity1.23E-02
30GO:0016298: lipase activity1.71E-02
31GO:0031625: ubiquitin protein ligase binding1.80E-02
32GO:0004674: protein serine/threonine kinase activity1.81E-02
33GO:0015035: protein disulfide oxidoreductase activity2.19E-02
34GO:0016746: transferase activity, transferring acyl groups2.19E-02
35GO:0030170: pyridoxal phosphate binding2.72E-02
36GO:0016757: transferase activity, transferring glycosyl groups3.80E-02
37GO:0005506: iron ion binding3.80E-02
38GO:0003824: catalytic activity4.24E-02
39GO:0004601: peroxidase activity4.33E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0005615: extracellular space5.11E-04
3GO:0009505: plant-type cell wall2.28E-03
4GO:0048046: apoplast2.98E-03
5GO:0015629: actin cytoskeleton4.30E-03
6GO:0005794: Golgi apparatus5.92E-03
7GO:0032580: Golgi cisterna membrane7.05E-03
8GO:0019005: SCF ubiquitin ligase complex9.59E-03
9GO:0016021: integral component of membrane2.11E-02
10GO:0009506: plasmodesma2.77E-02
11GO:0005802: trans-Golgi network3.06E-02
12GO:0005768: endosome3.48E-02
13GO:0005886: plasma membrane4.41E-02
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Gene type



Gene DE type