Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
11GO:0009773: photosynthetic electron transport in photosystem I1.91E-15
12GO:0006000: fructose metabolic process2.33E-08
13GO:0015979: photosynthesis1.90E-07
14GO:0030388: fructose 1,6-bisphosphate metabolic process3.41E-06
15GO:0009658: chloroplast organization8.10E-06
16GO:0006002: fructose 6-phosphate metabolic process8.96E-06
17GO:0032544: plastid translation8.96E-06
18GO:0031022: nuclear migration along microfilament1.22E-05
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.76E-05
20GO:0006094: gluconeogenesis4.38E-05
21GO:0045727: positive regulation of translation4.98E-05
22GO:0010207: photosystem II assembly5.34E-05
23GO:0019253: reductive pentose-phosphate cycle5.34E-05
24GO:0018298: protein-chromophore linkage7.32E-05
25GO:0009904: chloroplast accumulation movement7.90E-05
26GO:0009853: photorespiration1.13E-04
27GO:0042549: photosystem II stabilization1.15E-04
28GO:0009903: chloroplast avoidance movement1.58E-04
29GO:0007623: circadian rhythm2.04E-04
30GO:0010196: nonphotochemical quenching2.07E-04
31GO:0051180: vitamin transport2.72E-04
32GO:0009443: pyridoxal 5'-phosphate salvage2.72E-04
33GO:0070509: calcium ion import2.72E-04
34GO:0007263: nitric oxide mediated signal transduction2.72E-04
35GO:0030974: thiamine pyrophosphate transport2.72E-04
36GO:0046900: tetrahydrofolylpolyglutamate metabolic process2.72E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process2.72E-04
38GO:0051775: response to redox state2.72E-04
39GO:0000481: maturation of 5S rRNA2.72E-04
40GO:1904964: positive regulation of phytol biosynthetic process2.72E-04
41GO:0043609: regulation of carbon utilization2.72E-04
42GO:1902458: positive regulation of stomatal opening2.72E-04
43GO:0034337: RNA folding2.72E-04
44GO:0019252: starch biosynthetic process2.95E-04
45GO:0071482: cellular response to light stimulus3.23E-04
46GO:0010027: thylakoid membrane organization5.23E-04
47GO:0080005: photosystem stoichiometry adjustment5.99E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process5.99E-04
49GO:0015893: drug transport5.99E-04
50GO:0034755: iron ion transmembrane transport5.99E-04
51GO:0097054: L-glutamate biosynthetic process5.99E-04
52GO:1903426: regulation of reactive oxygen species biosynthetic process5.99E-04
53GO:0018119: peptidyl-cysteine S-nitrosylation6.22E-04
54GO:0005986: sucrose biosynthetic process8.06E-04
55GO:0009735: response to cytokinin8.14E-04
56GO:0006810: transport8.59E-04
57GO:0000913: preprophase band assembly9.72E-04
58GO:0006954: inflammatory response9.72E-04
59GO:0009768: photosynthesis, light harvesting in photosystem I1.37E-03
60GO:0071484: cellular response to light intensity1.39E-03
61GO:0009152: purine ribonucleotide biosynthetic process1.39E-03
62GO:0046653: tetrahydrofolate metabolic process1.39E-03
63GO:0006107: oxaloacetate metabolic process1.39E-03
64GO:0006537: glutamate biosynthetic process1.39E-03
65GO:0010731: protein glutathionylation1.39E-03
66GO:0046836: glycolipid transport1.39E-03
67GO:0010371: regulation of gibberellin biosynthetic process1.39E-03
68GO:0009644: response to high light intensity1.49E-03
69GO:0016226: iron-sulfur cluster assembly1.64E-03
70GO:0019464: glycine decarboxylation via glycine cleavage system1.86E-03
71GO:0009765: photosynthesis, light harvesting1.86E-03
72GO:0006109: regulation of carbohydrate metabolic process1.86E-03
73GO:0015994: chlorophyll metabolic process1.86E-03
74GO:0006734: NADH metabolic process1.86E-03
75GO:0010021: amylopectin biosynthetic process1.86E-03
76GO:0019676: ammonia assimilation cycle1.86E-03
77GO:0006364: rRNA processing1.97E-03
78GO:0042631: cellular response to water deprivation2.27E-03
79GO:0032543: mitochondrial translation2.37E-03
80GO:0010117: photoprotection2.37E-03
81GO:0006544: glycine metabolic process2.37E-03
82GO:0006564: L-serine biosynthetic process2.37E-03
83GO:0043097: pyrimidine nucleoside salvage2.37E-03
84GO:0045038: protein import into chloroplast thylakoid membrane2.37E-03
85GO:0031365: N-terminal protein amino acid modification2.37E-03
86GO:0007018: microtubule-based movement2.63E-03
87GO:0009791: post-embryonic development2.82E-03
88GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.93E-03
89GO:0010190: cytochrome b6f complex assembly2.93E-03
90GO:0006206: pyrimidine nucleobase metabolic process2.93E-03
91GO:0018258: protein O-linked glycosylation via hydroxyproline2.93E-03
92GO:0006563: L-serine metabolic process2.93E-03
93GO:0010405: arabinogalactan protein metabolic process2.93E-03
94GO:0016032: viral process3.22E-03
95GO:0042026: protein refolding3.52E-03
96GO:0006458: 'de novo' protein folding3.52E-03
97GO:0009854: oxidative photosynthetic carbon pathway3.52E-03
98GO:0009645: response to low light intensity stimulus4.15E-03
99GO:0006400: tRNA modification4.15E-03
100GO:0048564: photosystem I assembly4.82E-03
101GO:0009642: response to light intensity4.82E-03
102GO:0009704: de-etiolation4.82E-03
103GO:0032508: DNA duplex unwinding4.82E-03
104GO:2000070: regulation of response to water deprivation4.82E-03
105GO:0016559: peroxisome fission4.82E-03
106GO:0015996: chlorophyll catabolic process5.52E-03
107GO:0007186: G-protein coupled receptor signaling pathway5.52E-03
108GO:0017004: cytochrome complex assembly5.52E-03
109GO:0055085: transmembrane transport5.63E-03
110GO:0006098: pentose-phosphate shunt6.25E-03
111GO:0000373: Group II intron splicing6.25E-03
112GO:0010205: photoinhibition7.03E-03
113GO:0035999: tetrahydrofolate interconversion7.03E-03
114GO:1900865: chloroplast RNA modification7.03E-03
115GO:0009409: response to cold7.09E-03
116GO:0045036: protein targeting to chloroplast7.82E-03
117GO:0043085: positive regulation of catalytic activity8.66E-03
118GO:0008285: negative regulation of cell proliferation8.66E-03
119GO:0006879: cellular iron ion homeostasis8.66E-03
120GO:0000272: polysaccharide catabolic process8.66E-03
121GO:0045037: protein import into chloroplast stroma9.52E-03
122GO:0009767: photosynthetic electron transport chain1.04E-02
123GO:0010628: positive regulation of gene expression1.04E-02
124GO:0006108: malate metabolic process1.04E-02
125GO:0009636: response to toxic substance1.05E-02
126GO:0006541: glutamine metabolic process1.13E-02
127GO:0010020: chloroplast fission1.13E-02
128GO:0055114: oxidation-reduction process1.19E-02
129GO:0005985: sucrose metabolic process1.23E-02
130GO:0071732: cellular response to nitric oxide1.23E-02
131GO:0042742: defense response to bacterium1.27E-02
132GO:0006636: unsaturated fatty acid biosynthetic process1.33E-02
133GO:0080167: response to karrikin1.42E-02
134GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.48E-02
135GO:0008299: isoprenoid biosynthetic process1.53E-02
136GO:0016575: histone deacetylation1.53E-02
137GO:0006418: tRNA aminoacylation for protein translation1.53E-02
138GO:0007017: microtubule-based process1.53E-02
139GO:0010073: meristem maintenance1.53E-02
140GO:0009626: plant-type hypersensitive response1.59E-02
141GO:0061077: chaperone-mediated protein folding1.64E-02
142GO:0031408: oxylipin biosynthetic process1.64E-02
143GO:0071369: cellular response to ethylene stimulus1.86E-02
144GO:0010227: floral organ abscission1.86E-02
145GO:0006817: phosphate ion transport1.97E-02
146GO:0042391: regulation of membrane potential2.21E-02
147GO:0006520: cellular amino acid metabolic process2.33E-02
148GO:0006662: glycerol ether metabolic process2.33E-02
149GO:0010182: sugar mediated signaling pathway2.33E-02
150GO:0009058: biosynthetic process2.37E-02
151GO:0015986: ATP synthesis coupled proton transport2.45E-02
152GO:0006814: sodium ion transport2.45E-02
153GO:0005975: carbohydrate metabolic process2.58E-02
154GO:0080156: mitochondrial mRNA modification2.71E-02
155GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.71E-02
156GO:0006413: translational initiation2.89E-02
157GO:0071281: cellular response to iron ion2.97E-02
158GO:0071805: potassium ion transmembrane transport3.24E-02
159GO:0010228: vegetative to reproductive phase transition of meristem3.25E-02
160GO:0006508: proteolysis3.37E-02
161GO:0000910: cytokinesis3.38E-02
162GO:0001666: response to hypoxia3.52E-02
163GO:0009816: defense response to bacterium, incompatible interaction3.66E-02
164GO:0010468: regulation of gene expression3.70E-02
165GO:0042128: nitrate assimilation3.80E-02
166GO:0030244: cellulose biosynthetic process4.25E-02
167GO:0000160: phosphorelay signal transduction system4.40E-02
168GO:0006499: N-terminal protein myristoylation4.55E-02
169GO:0009407: toxin catabolic process4.55E-02
170GO:0010218: response to far red light4.55E-02
171GO:0009416: response to light stimulus4.72E-02
RankGO TermAdjusted P value
1GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
7GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0051721: protein phosphatase 2A binding0.00E+00
10GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
11GO:0043014: alpha-tubulin binding0.00E+00
12GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
13GO:0042903: tubulin deacetylase activity0.00E+00
14GO:0008974: phosphoribulokinase activity0.00E+00
15GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
16GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
17GO:0004823: leucine-tRNA ligase activity0.00E+00
18GO:0008465: glycerate dehydrogenase activity0.00E+00
19GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
20GO:1990534: thermospermine oxidase activity0.00E+00
21GO:0051738: xanthophyll binding0.00E+00
22GO:0016168: chlorophyll binding2.31E-06
23GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.41E-06
24GO:0004033: aldo-keto reductase (NADP) activity6.19E-06
25GO:0070402: NADPH binding1.22E-05
26GO:0051861: glycolipid binding4.98E-05
27GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.98E-05
28GO:0009011: starch synthase activity4.98E-05
29GO:0008266: poly(U) RNA binding5.34E-05
30GO:0022891: substrate-specific transmembrane transporter activity1.55E-04
31GO:0090422: thiamine pyrophosphate transporter activity2.72E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity2.72E-04
33GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.72E-04
34GO:0070006: metalloaminopeptidase activity2.72E-04
35GO:0003867: 4-aminobutyrate transaminase activity2.72E-04
36GO:0005080: protein kinase C binding2.72E-04
37GO:0008242: omega peptidase activity2.72E-04
38GO:0008746: NAD(P)+ transhydrogenase activity2.72E-04
39GO:0016041: glutamate synthase (ferredoxin) activity2.72E-04
40GO:0004328: formamidase activity2.72E-04
41GO:0030941: chloroplast targeting sequence binding2.72E-04
42GO:0005221: intracellular cyclic nucleotide activated cation channel activity2.72E-04
43GO:0004617: phosphoglycerate dehydrogenase activity5.99E-04
44GO:0033201: alpha-1,4-glucan synthase activity5.99E-04
45GO:0034722: gamma-glutamyl-peptidase activity5.99E-04
46GO:0008967: phosphoglycolate phosphatase activity5.99E-04
47GO:0047746: chlorophyllase activity5.99E-04
48GO:0010297: heteropolysaccharide binding5.99E-04
49GO:0004177: aminopeptidase activity6.22E-04
50GO:0019843: rRNA binding7.24E-04
51GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity9.72E-04
52GO:0004373: glycogen (starch) synthase activity9.72E-04
53GO:0002161: aminoacyl-tRNA editing activity9.72E-04
54GO:0032947: protein complex scaffold9.72E-04
55GO:0016742: hydroxymethyl-, formyl- and related transferase activity9.72E-04
56GO:0008864: formyltetrahydrofolate deformylase activity9.72E-04
57GO:0031409: pigment binding1.12E-03
58GO:0051536: iron-sulfur cluster binding1.24E-03
59GO:0015079: potassium ion transmembrane transporter activity1.37E-03
60GO:0017089: glycolipid transporter activity1.39E-03
61GO:0048487: beta-tubulin binding1.39E-03
62GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.39E-03
63GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.39E-03
64GO:0008508: bile acid:sodium symporter activity1.39E-03
65GO:0003824: catalytic activity1.43E-03
66GO:0004176: ATP-dependent peptidase activity1.50E-03
67GO:0043495: protein anchor1.86E-03
68GO:0003777: microtubule motor activity2.24E-03
69GO:0004372: glycine hydroxymethyltransferase activity2.37E-03
70GO:0051538: 3 iron, 4 sulfur cluster binding2.37E-03
71GO:0050662: coenzyme binding2.63E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity2.93E-03
73GO:0004332: fructose-bisphosphate aldolase activity2.93E-03
74GO:0042578: phosphoric ester hydrolase activity2.93E-03
75GO:0016615: malate dehydrogenase activity2.93E-03
76GO:2001070: starch binding2.93E-03
77GO:0048038: quinone binding3.02E-03
78GO:0004849: uridine kinase activity3.52E-03
79GO:0030060: L-malate dehydrogenase activity3.52E-03
80GO:0005261: cation channel activity3.52E-03
81GO:0005242: inward rectifier potassium channel activity3.52E-03
82GO:0008235: metalloexopeptidase activity4.15E-03
83GO:0019899: enzyme binding4.15E-03
84GO:0043022: ribosome binding4.82E-03
85GO:0008135: translation factor activity, RNA binding5.52E-03
86GO:0015078: hydrogen ion transmembrane transporter activity5.52E-03
87GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.52E-03
88GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.52E-03
89GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors6.25E-03
90GO:0004222: metalloendopeptidase activity6.27E-03
91GO:0008017: microtubule binding6.55E-03
92GO:0005381: iron ion transmembrane transporter activity7.03E-03
93GO:0008047: enzyme activator activity7.82E-03
94GO:0047372: acylglycerol lipase activity8.66E-03
95GO:0015386: potassium:proton antiporter activity8.66E-03
96GO:0044183: protein binding involved in protein folding8.66E-03
97GO:0004364: glutathione transferase activity8.93E-03
98GO:0051537: 2 iron, 2 sulfur cluster binding1.01E-02
99GO:0004565: beta-galactosidase activity1.04E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity1.04E-02
101GO:0005315: inorganic phosphate transmembrane transporter activity1.04E-02
102GO:0005262: calcium channel activity1.04E-02
103GO:0005198: structural molecule activity1.05E-02
104GO:0046872: metal ion binding1.13E-02
105GO:0008131: primary amine oxidase activity1.13E-02
106GO:0051287: NAD binding1.13E-02
107GO:0030553: cGMP binding1.23E-02
108GO:0030552: cAMP binding1.23E-02
109GO:0004857: enzyme inhibitor activity1.43E-02
110GO:0004407: histone deacetylase activity1.43E-02
111GO:0005528: FK506 binding1.43E-02
112GO:0043424: protein histidine kinase binding1.53E-02
113GO:0005216: ion channel activity1.53E-02
114GO:0003723: RNA binding1.87E-02
115GO:0016491: oxidoreductase activity2.03E-02
116GO:0047134: protein-disulfide reductase activity2.09E-02
117GO:0004812: aminoacyl-tRNA ligase activity2.09E-02
118GO:0030551: cyclic nucleotide binding2.21E-02
119GO:0003924: GTPase activity2.32E-02
120GO:0004791: thioredoxin-disulfide reductase activity2.45E-02
121GO:0016853: isomerase activity2.45E-02
122GO:0004518: nuclease activity2.84E-02
123GO:0000156: phosphorelay response regulator activity2.97E-02
124GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.97E-02
125GO:0008237: metallopeptidase activity3.24E-02
126GO:0016597: amino acid binding3.38E-02
127GO:0003743: translation initiation factor activity3.62E-02
128GO:0042802: identical protein binding3.93E-02
129GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.93E-02
130GO:0004721: phosphoprotein phosphatase activity3.95E-02
131GO:0005215: transporter activity4.48E-02
132GO:0016787: hydrolase activity4.55E-02
133GO:0008168: methyltransferase activity4.60E-02
134GO:0030145: manganese ion binding4.71E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast1.25E-57
4GO:0009535: chloroplast thylakoid membrane1.84E-30
5GO:0009941: chloroplast envelope3.97E-24
6GO:0009570: chloroplast stroma5.20E-23
7GO:0009534: chloroplast thylakoid8.53E-17
8GO:0009579: thylakoid6.31E-12
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.37E-12
10GO:0010319: stromule1.45E-06
11GO:0010287: plastoglobule8.35E-06
12GO:0009523: photosystem II1.82E-05
13GO:0009543: chloroplast thylakoid lumen1.06E-04
14GO:0048046: apoplast1.09E-04
15GO:0009782: photosystem I antenna complex2.72E-04
16GO:0016021: integral component of membrane3.04E-04
17GO:0000427: plastid-encoded plastid RNA polymerase complex5.99E-04
18GO:0031969: chloroplast membrane6.85E-04
19GO:0009707: chloroplast outer membrane7.33E-04
20GO:0009528: plastid inner membrane9.72E-04
21GO:0030076: light-harvesting complex1.01E-03
22GO:0009654: photosystem II oxygen evolving complex1.37E-03
23GO:0042651: thylakoid membrane1.37E-03
24GO:0030286: dynein complex1.86E-03
25GO:0009517: PSII associated light-harvesting complex II1.86E-03
26GO:0009527: plastid outer membrane1.86E-03
27GO:0005871: kinesin complex2.10E-03
28GO:0009512: cytochrome b6f complex2.37E-03
29GO:0019898: extrinsic component of membrane2.82E-03
30GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.93E-03
31GO:0009706: chloroplast inner membrane3.08E-03
32GO:0031359: integral component of chloroplast outer membrane4.15E-03
33GO:0005623: cell4.25E-03
34GO:0009501: amyloplast4.82E-03
35GO:0031977: thylakoid lumen8.57E-03
36GO:0032040: small-subunit processome9.52E-03
37GO:0005875: microtubule associated complex1.33E-02
38GO:0009532: plastid stroma1.64E-02
39GO:0016020: membrane2.28E-02
40GO:0009522: photosystem I2.45E-02
41GO:0009504: cell plate2.58E-02
42GO:0005759: mitochondrial matrix2.82E-02
43GO:0005694: chromosome2.84E-02
44GO:0030529: intracellular ribonucleoprotein complex3.52E-02
45GO:0005840: ribosome4.15E-02
46GO:0015934: large ribosomal subunit4.71E-02
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Gene type



Gene DE type