Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G22640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0006223: uracil salvage0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0015979: photosynthesis1.24E-06
11GO:0009657: plastid organization6.65E-06
12GO:0016117: carotenoid biosynthetic process6.68E-06
13GO:0009735: response to cytokinin1.81E-05
14GO:0009773: photosynthetic electron transport in photosystem I2.13E-05
15GO:0006546: glycine catabolic process4.05E-05
16GO:0019464: glycine decarboxylation via glycine cleavage system4.05E-05
17GO:0010207: photosystem II assembly4.06E-05
18GO:0009658: chloroplast organization4.78E-05
19GO:0016123: xanthophyll biosynthetic process6.46E-05
20GO:0061077: chaperone-mediated protein folding9.24E-05
21GO:0010190: cytochrome b6f complex assembly9.47E-05
22GO:0006730: one-carbon metabolic process1.06E-04
23GO:0042026: protein refolding1.30E-04
24GO:0006810: transport1.48E-04
25GO:0009443: pyridoxal 5'-phosphate salvage2.41E-04
26GO:0006438: valyl-tRNA aminoacylation2.41E-04
27GO:1904966: positive regulation of vitamin E biosynthetic process2.41E-04
28GO:1904964: positive regulation of phytol biosynthetic process2.41E-04
29GO:1902458: positive regulation of stomatal opening2.41E-04
30GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.41E-04
31GO:0032544: plastid translation2.70E-04
32GO:0071482: cellular response to light stimulus2.70E-04
33GO:0006415: translational termination5.25E-04
34GO:0006352: DNA-templated transcription, initiation5.25E-04
35GO:1902326: positive regulation of chlorophyll biosynthetic process5.34E-04
36GO:0006423: cysteinyl-tRNA aminoacylation5.34E-04
37GO:0080183: response to photooxidative stress5.34E-04
38GO:1903426: regulation of reactive oxygen species biosynthetic process5.34E-04
39GO:0030388: fructose 1,6-bisphosphate metabolic process5.34E-04
40GO:0010275: NAD(P)H dehydrogenase complex assembly5.34E-04
41GO:0046686: response to cadmium ion6.44E-04
42GO:0009767: photosynthetic electron transport chain6.81E-04
43GO:0010020: chloroplast fission7.67E-04
44GO:0019253: reductive pentose-phosphate cycle7.67E-04
45GO:0009853: photorespiration7.93E-04
46GO:0090351: seedling development8.57E-04
47GO:0006000: fructose metabolic process8.68E-04
48GO:0006518: peptide metabolic process8.68E-04
49GO:0006696: ergosterol biosynthetic process8.68E-04
50GO:2001295: malonyl-CoA biosynthetic process8.68E-04
51GO:0090506: axillary shoot meristem initiation8.68E-04
52GO:0019344: cysteine biosynthetic process1.05E-03
53GO:0006418: tRNA aminoacylation for protein translation1.16E-03
54GO:0006241: CTP biosynthetic process1.24E-03
55GO:0006165: nucleoside diphosphate phosphorylation1.24E-03
56GO:0010731: protein glutathionylation1.24E-03
57GO:0006424: glutamyl-tRNA aminoacylation1.24E-03
58GO:0006228: UTP biosynthetic process1.24E-03
59GO:0016556: mRNA modification1.24E-03
60GO:0043572: plastid fission1.24E-03
61GO:2001141: regulation of RNA biosynthetic process1.24E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.24E-03
63GO:0051085: chaperone mediated protein folding requiring cofactor1.24E-03
64GO:0010239: chloroplast mRNA processing1.24E-03
65GO:0080092: regulation of pollen tube growth1.38E-03
66GO:2000122: negative regulation of stomatal complex development1.65E-03
67GO:0044206: UMP salvage1.65E-03
68GO:0071483: cellular response to blue light1.65E-03
69GO:0009902: chloroplast relocation1.65E-03
70GO:0010037: response to carbon dioxide1.65E-03
71GO:0006808: regulation of nitrogen utilization1.65E-03
72GO:0015976: carbon utilization1.65E-03
73GO:0009765: photosynthesis, light harvesting1.65E-03
74GO:0006183: GTP biosynthetic process1.65E-03
75GO:0016120: carotene biosynthetic process2.11E-03
76GO:0032543: mitochondrial translation2.11E-03
77GO:0043097: pyrimidine nucleoside salvage2.11E-03
78GO:0010236: plastoquinone biosynthetic process2.11E-03
79GO:0045038: protein import into chloroplast thylakoid membrane2.11E-03
80GO:0006461: protein complex assembly2.11E-03
81GO:0010358: leaf shaping2.60E-03
82GO:0006206: pyrimidine nucleobase metabolic process2.60E-03
83GO:0032973: amino acid export2.60E-03
84GO:0042549: photosystem II stabilization2.60E-03
85GO:0006555: methionine metabolic process2.60E-03
86GO:0032502: developmental process2.71E-03
87GO:0010067: procambium histogenesis3.12E-03
88GO:0006458: 'de novo' protein folding3.12E-03
89GO:1901259: chloroplast rRNA processing3.12E-03
90GO:0009854: oxidative photosynthetic carbon pathway3.12E-03
91GO:0048444: floral organ morphogenesis3.12E-03
92GO:0010555: response to mannitol3.12E-03
93GO:0009955: adaxial/abaxial pattern specification3.12E-03
94GO:0010027: thylakoid membrane organization3.66E-03
95GO:0006400: tRNA modification3.68E-03
96GO:0043090: amino acid import3.68E-03
97GO:0009642: response to light intensity4.27E-03
98GO:0042255: ribosome assembly4.27E-03
99GO:0006353: DNA-templated transcription, termination4.27E-03
100GO:2000070: regulation of response to water deprivation4.27E-03
101GO:0045010: actin nucleation4.27E-03
102GO:0048564: photosystem I assembly4.27E-03
103GO:0007186: G-protein coupled receptor signaling pathway4.89E-03
104GO:0017004: cytochrome complex assembly4.89E-03
105GO:0006002: fructose 6-phosphate metabolic process4.89E-03
106GO:0015996: chlorophyll catabolic process4.89E-03
107GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.89E-03
108GO:0009409: response to cold5.01E-03
109GO:0010206: photosystem II repair5.54E-03
110GO:0080144: amino acid homeostasis5.54E-03
111GO:0000902: cell morphogenesis5.54E-03
112GO:1900865: chloroplast RNA modification6.21E-03
113GO:0043067: regulation of programmed cell death6.21E-03
114GO:0035999: tetrahydrofolate interconversion6.21E-03
115GO:0009870: defense response signaling pathway, resistance gene-dependent6.92E-03
116GO:0006535: cysteine biosynthetic process from serine6.92E-03
117GO:0019684: photosynthesis, light reaction7.65E-03
118GO:0018119: peptidyl-cysteine S-nitrosylation7.65E-03
119GO:0045037: protein import into chloroplast stroma8.41E-03
120GO:0009636: response to toxic substance8.76E-03
121GO:0030036: actin cytoskeleton organization9.20E-03
122GO:0006094: gluconeogenesis9.20E-03
123GO:0005986: sucrose biosynthetic process9.20E-03
124GO:0010223: secondary shoot formation1.00E-02
125GO:0009934: regulation of meristem structural organization1.00E-02
126GO:0006636: unsaturated fatty acid biosynthetic process1.17E-02
127GO:0006096: glycolytic process1.25E-02
128GO:0009116: nucleoside metabolic process1.26E-02
129GO:0016575: histone deacetylation1.35E-02
130GO:0007017: microtubule-based process1.35E-02
131GO:0051302: regulation of cell division1.35E-02
132GO:0009793: embryo development ending in seed dormancy1.42E-02
133GO:0045454: cell redox homeostasis1.42E-02
134GO:0007005: mitochondrion organization1.54E-02
135GO:0009411: response to UV1.64E-02
136GO:0001944: vasculature development1.64E-02
137GO:0010089: xylem development1.74E-02
138GO:0008033: tRNA processing1.95E-02
139GO:0000413: protein peptidyl-prolyl isomerization1.95E-02
140GO:0010087: phloem or xylem histogenesis1.95E-02
141GO:0008360: regulation of cell shape2.05E-02
142GO:0010197: polar nucleus fusion2.05E-02
143GO:0010182: sugar mediated signaling pathway2.05E-02
144GO:0009741: response to brassinosteroid2.05E-02
145GO:0010268: brassinosteroid homeostasis2.05E-02
146GO:0007018: microtubule-based movement2.16E-02
147GO:0019252: starch biosynthetic process2.27E-02
148GO:0006633: fatty acid biosynthetic process2.37E-02
149GO:0016132: brassinosteroid biosynthetic process2.38E-02
150GO:0080156: mitochondrial mRNA modification2.38E-02
151GO:0006413: translational initiation2.42E-02
152GO:0006508: proteolysis2.43E-02
153GO:0055114: oxidation-reduction process2.48E-02
154GO:0007264: small GTPase mediated signal transduction2.50E-02
155GO:0010090: trichome morphogenesis2.62E-02
156GO:0016125: sterol metabolic process2.73E-02
157GO:0006412: translation2.74E-02
158GO:0010286: heat acclimation2.85E-02
159GO:0071805: potassium ion transmembrane transport2.85E-02
160GO:0042742: defense response to bacterium3.00E-02
161GO:0008380: RNA splicing3.10E-02
162GO:0009627: systemic acquired resistance3.35E-02
163GO:0042128: nitrate assimilation3.35E-02
164GO:0009817: defense response to fungus, incompatible interaction3.75E-02
165GO:0048481: plant ovule development3.75E-02
166GO:0018298: protein-chromophore linkage3.75E-02
167GO:0008219: cell death3.75E-02
168GO:0009407: toxin catabolic process4.01E-02
169GO:0010119: regulation of stomatal movement4.15E-02
170GO:0009867: jasmonic acid mediated signaling pathway4.43E-02
171GO:0016051: carbohydrate biosynthetic process4.43E-02
172GO:0048366: leaf development4.71E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0042903: tubulin deacetylase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
12GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
13GO:0005528: FK506 binding1.98E-06
14GO:0004326: tetrahydrofolylpolyglutamate synthase activity2.70E-06
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.34E-05
16GO:0016149: translation release factor activity, codon specific2.23E-05
17GO:0004375: glycine dehydrogenase (decarboxylating) activity2.23E-05
18GO:0001053: plastid sigma factor activity4.05E-05
19GO:0016987: sigma factor activity4.05E-05
20GO:0019843: rRNA binding7.23E-05
21GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.30E-04
22GO:0003867: 4-aminobutyrate transaminase activity2.41E-04
23GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.41E-04
24GO:0051996: squalene synthase activity2.41E-04
25GO:0004832: valine-tRNA ligase activity2.41E-04
26GO:0010012: steroid 22-alpha hydroxylase activity2.41E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.41E-04
28GO:0003747: translation release factor activity3.27E-04
29GO:0005089: Rho guanyl-nucleotide exchange factor activity5.25E-04
30GO:0044183: protein binding involved in protein folding5.25E-04
31GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.34E-04
32GO:0050017: L-3-cyanoalanine synthase activity5.34E-04
33GO:0010291: carotene beta-ring hydroxylase activity5.34E-04
34GO:0042389: omega-3 fatty acid desaturase activity5.34E-04
35GO:0004618: phosphoglycerate kinase activity5.34E-04
36GO:0004047: aminomethyltransferase activity5.34E-04
37GO:0004817: cysteine-tRNA ligase activity5.34E-04
38GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.34E-04
39GO:0005509: calcium ion binding6.63E-04
40GO:0004222: metalloendopeptidase activity6.66E-04
41GO:0017150: tRNA dihydrouridine synthase activity8.68E-04
42GO:0002161: aminoacyl-tRNA editing activity8.68E-04
43GO:0004148: dihydrolipoyl dehydrogenase activity8.68E-04
44GO:0004075: biotin carboxylase activity8.68E-04
45GO:0030267: glyoxylate reductase (NADP) activity8.68E-04
46GO:0070402: NADPH binding8.68E-04
47GO:0048487: beta-tubulin binding1.24E-03
48GO:0004550: nucleoside diphosphate kinase activity1.24E-03
49GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.24E-03
50GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.65E-03
51GO:0043495: protein anchor1.65E-03
52GO:0004845: uracil phosphoribosyltransferase activity1.65E-03
53GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.65E-03
54GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.65E-03
55GO:0004812: aminoacyl-tRNA ligase activity1.77E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor2.11E-03
57GO:0003989: acetyl-CoA carboxylase activity2.11E-03
58GO:0008374: O-acyltransferase activity2.11E-03
59GO:0042578: phosphoric ester hydrolase activity2.60E-03
60GO:0008200: ion channel inhibitor activity2.60E-03
61GO:0080030: methyl indole-3-acetate esterase activity2.60E-03
62GO:0004849: uridine kinase activity3.12E-03
63GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.12E-03
64GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.12E-03
65GO:0004124: cysteine synthase activity3.12E-03
66GO:0051920: peroxiredoxin activity3.12E-03
67GO:0008237: metallopeptidase activity3.26E-03
68GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.39E-03
69GO:0003735: structural constituent of ribosome3.56E-03
70GO:0019899: enzyme binding3.68E-03
71GO:0004033: aldo-keto reductase (NADP) activity4.27E-03
72GO:0016209: antioxidant activity4.27E-03
73GO:0008236: serine-type peptidase activity4.53E-03
74GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.89E-03
75GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.89E-03
76GO:0003843: 1,3-beta-D-glucan synthase activity4.89E-03
77GO:0003729: mRNA binding6.03E-03
78GO:0004364: glutathione transferase activity7.48E-03
79GO:0000049: tRNA binding8.41E-03
80GO:0051537: 2 iron, 2 sulfur cluster binding8.43E-03
81GO:0005198: structural molecule activity8.76E-03
82GO:0004089: carbonate dehydratase activity9.20E-03
83GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.05E-02
84GO:0004407: histone deacetylase activity1.26E-02
85GO:0015079: potassium ion transmembrane transporter activity1.35E-02
86GO:0016740: transferase activity1.41E-02
87GO:0004176: ATP-dependent peptidase activity1.45E-02
88GO:0033612: receptor serine/threonine kinase binding1.45E-02
89GO:0051082: unfolded protein binding1.50E-02
90GO:0022891: substrate-specific transmembrane transporter activity1.64E-02
91GO:0003727: single-stranded RNA binding1.74E-02
92GO:0005102: receptor binding1.84E-02
93GO:0003924: GTPase activity1.86E-02
94GO:0003713: transcription coactivator activity2.05E-02
95GO:0004519: endonuclease activity2.06E-02
96GO:0005525: GTP binding2.21E-02
97GO:0048038: quinone binding2.38E-02
98GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.62E-02
99GO:0003723: RNA binding2.78E-02
100GO:0008483: transaminase activity2.85E-02
101GO:0005200: structural constituent of cytoskeleton2.85E-02
102GO:0016597: amino acid binding2.98E-02
103GO:0003743: translation initiation factor activity3.04E-02
104GO:0016168: chlorophyll binding3.23E-02
105GO:0042802: identical protein binding3.30E-02
106GO:0009931: calcium-dependent protein serine/threonine kinase activity3.35E-02
107GO:0004683: calmodulin-dependent protein kinase activity3.48E-02
108GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.61E-02
109GO:0004601: peroxidase activity4.01E-02
110GO:0050897: cobalt ion binding4.15E-02
111GO:0003746: translation elongation factor activity4.43E-02
112GO:0000987: core promoter proximal region sequence-specific DNA binding4.57E-02
113GO:0050660: flavin adenine dinucleotide binding4.63E-02
114GO:0051539: 4 iron, 4 sulfur cluster binding4.86E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast1.48E-56
4GO:0009570: chloroplast stroma5.85E-29
5GO:0009535: chloroplast thylakoid membrane5.90E-24
6GO:0009941: chloroplast envelope6.26E-22
7GO:0009579: thylakoid1.23E-21
8GO:0009543: chloroplast thylakoid lumen2.41E-19
9GO:0031977: thylakoid lumen6.61E-12
10GO:0009654: photosystem II oxygen evolving complex6.86E-12
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.47E-10
12GO:0019898: extrinsic component of membrane7.98E-09
13GO:0030095: chloroplast photosystem II1.26E-08
14GO:0009534: chloroplast thylakoid6.46E-08
15GO:0010319: stromule9.14E-07
16GO:0005960: glycine cleavage complex2.23E-05
17GO:0042651: thylakoid membrane7.99E-05
18GO:0009523: photosystem II2.33E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.41E-04
20GO:0031969: chloroplast membrane5.00E-04
21GO:0042170: plastid membrane5.34E-04
22GO:0000311: plastid large ribosomal subunit6.01E-04
23GO:0009528: plastid inner membrane8.68E-04
24GO:0009532: plastid stroma1.27E-03
25GO:0009527: plastid outer membrane1.65E-03
26GO:0022626: cytosolic ribosome2.51E-03
27GO:0031209: SCAR complex2.60E-03
28GO:0009533: chloroplast stromal thylakoid3.68E-03
29GO:0005759: mitochondrial matrix4.38E-03
30GO:0009707: chloroplast outer membrane4.77E-03
31GO:0048046: apoplast4.85E-03
32GO:0009539: photosystem II reaction center4.89E-03
33GO:0000148: 1,3-beta-D-glucan synthase complex4.89E-03
34GO:0015934: large ribosomal subunit5.51E-03
35GO:0045298: tubulin complex5.54E-03
36GO:0005763: mitochondrial small ribosomal subunit5.54E-03
37GO:0016324: apical plasma membrane6.92E-03
38GO:0005840: ribosome1.01E-02
39GO:0005874: microtubule1.08E-02
40GO:0005875: microtubule associated complex1.17E-02
41GO:0009536: plastid1.33E-02
42GO:0009706: chloroplast inner membrane1.50E-02
43GO:0010287: plastoglobule1.78E-02
44GO:0005871: kinesin complex1.84E-02
45GO:0005819: spindle4.71E-02
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Gene type



Gene DE type