Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G22620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
13GO:0034337: RNA folding0.00E+00
14GO:0006429: leucyl-tRNA aminoacylation0.00E+00
15GO:0045176: apical protein localization0.00E+00
16GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
17GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
18GO:0015979: photosynthesis2.31E-13
19GO:0009773: photosynthetic electron transport in photosystem I2.80E-12
20GO:0010027: thylakoid membrane organization6.66E-12
21GO:0006000: fructose metabolic process6.35E-08
22GO:1902326: positive regulation of chlorophyll biosynthetic process6.94E-06
23GO:0030388: fructose 1,6-bisphosphate metabolic process6.94E-06
24GO:0010196: nonphotochemical quenching1.04E-05
25GO:0018298: protein-chromophore linkage1.57E-05
26GO:0032544: plastid translation2.22E-05
27GO:0006002: fructose 6-phosphate metabolic process2.22E-05
28GO:0005983: starch catabolic process8.22E-05
29GO:0015994: chlorophyll metabolic process9.33E-05
30GO:0006094: gluconeogenesis1.00E-04
31GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.07E-04
32GO:0010019: chloroplast-nucleus signaling pathway2.80E-04
33GO:0043953: protein transport by the Tat complex3.94E-04
34GO:0071277: cellular response to calcium ion3.94E-04
35GO:0000481: maturation of 5S rRNA3.94E-04
36GO:0080051: cutin transport3.94E-04
37GO:0065002: intracellular protein transmembrane transport3.94E-04
38GO:0006106: fumarate metabolic process3.94E-04
39GO:0043609: regulation of carbon utilization3.94E-04
40GO:0010028: xanthophyll cycle3.94E-04
41GO:0071588: hydrogen peroxide mediated signaling pathway3.94E-04
42GO:0009443: pyridoxal 5'-phosphate salvage3.94E-04
43GO:0009704: de-etiolation4.53E-04
44GO:0071482: cellular response to light stimulus5.53E-04
45GO:0009735: response to cytokinin6.87E-04
46GO:1900865: chloroplast RNA modification7.83E-04
47GO:0009416: response to light stimulus8.37E-04
48GO:0015908: fatty acid transport8.55E-04
49GO:0034755: iron ion transmembrane transport8.55E-04
50GO:0009662: etioplast organization8.55E-04
51GO:0097054: L-glutamate biosynthetic process8.55E-04
52GO:0016122: xanthophyll metabolic process8.55E-04
53GO:0010270: photosystem II oxygen evolving complex assembly8.55E-04
54GO:0080005: photosystem stoichiometry adjustment8.55E-04
55GO:0009658: chloroplast organization1.22E-03
56GO:0015995: chlorophyll biosynthetic process1.27E-03
57GO:0005986: sucrose biosynthetic process1.36E-03
58GO:0006954: inflammatory response1.39E-03
59GO:0090391: granum assembly1.39E-03
60GO:0006518: peptide metabolic process1.39E-03
61GO:0051604: protein maturation1.39E-03
62GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.39E-03
63GO:0016050: vesicle organization1.39E-03
64GO:0031022: nuclear migration along microfilament1.39E-03
65GO:1902448: positive regulation of shade avoidance1.39E-03
66GO:0010207: photosystem II assembly1.53E-03
67GO:0009853: photorespiration1.95E-03
68GO:1901332: negative regulation of lateral root development2.00E-03
69GO:2001141: regulation of RNA biosynthetic process2.00E-03
70GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.00E-03
71GO:0009152: purine ribonucleotide biosynthetic process2.00E-03
72GO:0046653: tetrahydrofolate metabolic process2.00E-03
73GO:0006537: glutamate biosynthetic process2.00E-03
74GO:0009052: pentose-phosphate shunt, non-oxidative branch2.00E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I2.34E-03
76GO:0061077: chaperone-mediated protein folding2.57E-03
77GO:0010021: amylopectin biosynthetic process2.69E-03
78GO:0010222: stem vascular tissue pattern formation2.69E-03
79GO:0010109: regulation of photosynthesis2.69E-03
80GO:0019676: ammonia assimilation cycle2.69E-03
81GO:0019464: glycine decarboxylation via glycine cleavage system2.69E-03
82GO:0009765: photosynthesis, light harvesting2.69E-03
83GO:0045727: positive regulation of translation2.69E-03
84GO:0006855: drug transmembrane transport3.28E-03
85GO:0009306: protein secretion3.33E-03
86GO:0032543: mitochondrial translation3.44E-03
87GO:0006564: L-serine biosynthetic process3.44E-03
88GO:0006544: glycine metabolic process3.44E-03
89GO:0009904: chloroplast accumulation movement3.44E-03
90GO:0045038: protein import into chloroplast thylakoid membrane3.44E-03
91GO:0006461: protein complex assembly3.44E-03
92GO:0042335: cuticle development3.91E-03
93GO:0010190: cytochrome b6f complex assembly4.26E-03
94GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.26E-03
95GO:0006828: manganese ion transport4.26E-03
96GO:0032973: amino acid export4.26E-03
97GO:0006563: L-serine metabolic process4.26E-03
98GO:0048827: phyllome development4.26E-03
99GO:0042549: photosystem II stabilization4.26E-03
100GO:0000470: maturation of LSU-rRNA4.26E-03
101GO:0009913: epidermal cell differentiation4.26E-03
102GO:0016554: cytidine to uridine editing4.26E-03
103GO:0055085: transmembrane transport4.63E-03
104GO:0019252: starch biosynthetic process4.86E-03
105GO:0006458: 'de novo' protein folding5.13E-03
106GO:0042026: protein refolding5.13E-03
107GO:1901259: chloroplast rRNA processing5.13E-03
108GO:0009903: chloroplast avoidance movement5.13E-03
109GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.06E-03
110GO:0009645: response to low light intensity stimulus6.06E-03
111GO:0009395: phospholipid catabolic process6.06E-03
112GO:0043090: amino acid import6.06E-03
113GO:0008610: lipid biosynthetic process7.05E-03
114GO:0009642: response to light intensity7.05E-03
115GO:0006605: protein targeting7.05E-03
116GO:0032508: DNA duplex unwinding7.05E-03
117GO:0010492: maintenance of shoot apical meristem identity7.05E-03
118GO:0009657: plastid organization8.09E-03
119GO:0017004: cytochrome complex assembly8.09E-03
120GO:0006810: transport8.97E-03
121GO:0080144: amino acid homeostasis9.18E-03
122GO:0006098: pentose-phosphate shunt9.18E-03
123GO:0090333: regulation of stomatal closure9.18E-03
124GO:0048507: meristem development9.18E-03
125GO:0000373: Group II intron splicing9.18E-03
126GO:0010206: photosystem II repair9.18E-03
127GO:0005975: carbohydrate metabolic process9.63E-03
128GO:0010205: photoinhibition1.03E-02
129GO:0009638: phototropism1.03E-02
130GO:0006779: porphyrin-containing compound biosynthetic process1.03E-02
131GO:0035999: tetrahydrofolate interconversion1.03E-02
132GO:0009631: cold acclimation1.14E-02
133GO:0006782: protoporphyrinogen IX biosynthetic process1.15E-02
134GO:0009637: response to blue light1.25E-02
135GO:0007623: circadian rhythm1.25E-02
136GO:0009073: aromatic amino acid family biosynthetic process1.28E-02
137GO:0006879: cellular iron ion homeostasis1.28E-02
138GO:0006352: DNA-templated transcription, initiation1.28E-02
139GO:0006415: translational termination1.28E-02
140GO:0009750: response to fructose1.28E-02
141GO:0009451: RNA modification1.28E-02
142GO:0000038: very long-chain fatty acid metabolic process1.28E-02
143GO:0006816: calcium ion transport1.28E-02
144GO:0008152: metabolic process1.53E-02
145GO:0010628: positive regulation of gene expression1.54E-02
146GO:0009785: blue light signaling pathway1.54E-02
147GO:0006108: malate metabolic process1.54E-02
148GO:0010229: inflorescence development1.54E-02
149GO:0009767: photosynthetic electron transport chain1.54E-02
150GO:0010588: cotyledon vascular tissue pattern formation1.54E-02
151GO:0010114: response to red light1.62E-02
152GO:0019253: reductive pentose-phosphate cycle1.68E-02
153GO:0010540: basipetal auxin transport1.68E-02
154GO:0009644: response to high light intensity1.75E-02
155GO:0005985: sucrose metabolic process1.82E-02
156GO:0071732: cellular response to nitric oxide1.82E-02
157GO:0010025: wax biosynthetic process1.96E-02
158GO:0006636: unsaturated fatty acid biosynthetic process1.96E-02
159GO:0006364: rRNA processing2.19E-02
160GO:0006418: tRNA aminoacylation for protein translation2.27E-02
161GO:0008299: isoprenoid biosynthetic process2.27E-02
162GO:0016575: histone deacetylation2.27E-02
163GO:0055114: oxidation-reduction process2.39E-02
164GO:0016114: terpenoid biosynthetic process2.43E-02
165GO:0035428: hexose transmembrane transport2.59E-02
166GO:0006096: glycolytic process2.59E-02
167GO:0016226: iron-sulfur cluster assembly2.59E-02
168GO:0071369: cellular response to ethylene stimulus2.75E-02
169GO:0006012: galactose metabolic process2.75E-02
170GO:0080167: response to karrikin2.84E-02
171GO:0009561: megagametogenesis2.92E-02
172GO:0016117: carotenoid biosynthetic process3.09E-02
173GO:0010118: stomatal movement3.27E-02
174GO:0046323: glucose import3.45E-02
175GO:0048544: recognition of pollen3.63E-02
176GO:0007018: microtubule-based movement3.63E-02
177GO:0006814: sodium ion transport3.63E-02
178GO:0048825: cotyledon development3.82E-02
179GO:0000302: response to reactive oxygen species4.01E-02
180GO:0080156: mitochondrial mRNA modification4.01E-02
181GO:0016032: viral process4.20E-02
182GO:0071281: cellular response to iron ion4.39E-02
183GO:0042744: hydrogen peroxide catabolic process4.42E-02
184GO:0009567: double fertilization forming a zygote and endosperm4.59E-02
185GO:0006633: fatty acid biosynthetic process4.87E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
3GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0043014: alpha-tubulin binding0.00E+00
6GO:0042903: tubulin deacetylase activity0.00E+00
7GO:0051060: pullulanase activity0.00E+00
8GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
9GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
10GO:0004823: leucine-tRNA ligase activity0.00E+00
11GO:0046408: chlorophyll synthetase activity0.00E+00
12GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
13GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
14GO:0005048: signal sequence binding0.00E+00
15GO:0046608: carotenoid isomerase activity0.00E+00
16GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
17GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
18GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
19GO:0010303: limit dextrinase activity0.00E+00
20GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.94E-06
21GO:0016168: chlorophyll binding9.26E-06
22GO:0005528: FK506 binding9.36E-06
23GO:0070402: NADPH binding2.42E-05
24GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.14E-05
25GO:0043495: protein anchor9.33E-05
26GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.72E-04
27GO:2001070: starch binding2.07E-04
28GO:0022891: substrate-specific transmembrane transporter activity3.27E-04
29GO:0019899: enzyme binding3.62E-04
30GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.94E-04
31GO:0070006: metalloaminopeptidase activity3.94E-04
32GO:0050308: sugar-phosphatase activity3.94E-04
33GO:0019203: carbohydrate phosphatase activity3.94E-04
34GO:0003867: 4-aminobutyrate transaminase activity3.94E-04
35GO:0005080: protein kinase C binding3.94E-04
36GO:0045485: omega-6 fatty acid desaturase activity3.94E-04
37GO:0015245: fatty acid transporter activity3.94E-04
38GO:0016041: glutamate synthase (ferredoxin) activity3.94E-04
39GO:0004333: fumarate hydratase activity3.94E-04
40GO:0050139: nicotinate-N-glucosyltransferase activity3.94E-04
41GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.94E-04
42GO:0004856: xylulokinase activity3.94E-04
43GO:0009496: plastoquinol--plastocyanin reductase activity3.94E-04
44GO:0004033: aldo-keto reductase (NADP) activity4.53E-04
45GO:0008967: phosphoglycolate phosphatase activity8.55E-04
46GO:0047746: chlorophyllase activity8.55E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity8.55E-04
48GO:0004617: phosphoglycerate dehydrogenase activity8.55E-04
49GO:0033201: alpha-1,4-glucan synthase activity8.55E-04
50GO:0016630: protochlorophyllide reductase activity8.55E-04
51GO:0004565: beta-galactosidase activity1.36E-03
52GO:0031072: heat shock protein binding1.36E-03
53GO:0002161: aminoacyl-tRNA editing activity1.39E-03
54GO:0004751: ribose-5-phosphate isomerase activity1.39E-03
55GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.39E-03
56GO:0008864: formyltetrahydrofolate deformylase activity1.39E-03
57GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.39E-03
58GO:0004373: glycogen (starch) synthase activity1.39E-03
59GO:0008266: poly(U) RNA binding1.53E-03
60GO:0019843: rRNA binding1.65E-03
61GO:0031409: pigment binding1.91E-03
62GO:0048487: beta-tubulin binding2.00E-03
63GO:0016149: translation release factor activity, codon specific2.00E-03
64GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.00E-03
65GO:0008508: bile acid:sodium symporter activity2.00E-03
66GO:0019201: nucleotide kinase activity2.00E-03
67GO:0001053: plastid sigma factor activity2.69E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.69E-03
69GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.69E-03
70GO:0004045: aminoacyl-tRNA hydrolase activity2.69E-03
71GO:0016987: sigma factor activity2.69E-03
72GO:0009011: starch synthase activity2.69E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor3.44E-03
74GO:0004040: amidase activity3.44E-03
75GO:0051538: 3 iron, 4 sulfur cluster binding3.44E-03
76GO:0004372: glycine hydroxymethyltransferase activity3.44E-03
77GO:0003959: NADPH dehydrogenase activity3.44E-03
78GO:0003723: RNA binding3.63E-03
79GO:0004556: alpha-amylase activity4.26E-03
80GO:0004130: cytochrome-c peroxidase activity4.26E-03
81GO:0016688: L-ascorbate peroxidase activity4.26E-03
82GO:0042578: phosphoric ester hydrolase activity4.26E-03
83GO:0004332: fructose-bisphosphate aldolase activity4.26E-03
84GO:0016853: isomerase activity4.53E-03
85GO:0004017: adenylate kinase activity5.13E-03
86GO:0051082: unfolded protein binding6.19E-03
87GO:0043022: ribosome binding7.05E-03
88GO:0008312: 7S RNA binding7.05E-03
89GO:0004034: aldose 1-epimerase activity7.05E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.09E-03
91GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.18E-03
92GO:0003747: translation release factor activity9.18E-03
93GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.18E-03
94GO:0008236: serine-type peptidase activity9.37E-03
95GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.86E-03
96GO:0005384: manganese ion transmembrane transporter activity1.03E-02
97GO:0005381: iron ion transmembrane transporter activity1.03E-02
98GO:0015238: drug transmembrane transporter activity1.04E-02
99GO:0004222: metalloendopeptidase activity1.09E-02
100GO:0015386: potassium:proton antiporter activity1.28E-02
101GO:0004177: aminopeptidase activity1.28E-02
102GO:0044183: protein binding involved in protein folding1.28E-02
103GO:0005215: transporter activity1.40E-02
104GO:0004519: endonuclease activity1.50E-02
105GO:0004022: alcohol dehydrogenase (NAD) activity1.54E-02
106GO:0015095: magnesium ion transmembrane transporter activity1.54E-02
107GO:0009982: pseudouridine synthase activity1.54E-02
108GO:0042802: identical protein binding1.69E-02
109GO:0016491: oxidoreductase activity1.95E-02
110GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.96E-02
111GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.96E-02
112GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.96E-02
113GO:0016787: hydrolase activity1.99E-02
114GO:0051536: iron-sulfur cluster binding2.11E-02
115GO:0004407: histone deacetylase activity2.11E-02
116GO:0015079: potassium ion transmembrane transporter activity2.27E-02
117GO:0004176: ATP-dependent peptidase activity2.43E-02
118GO:0003729: mRNA binding2.46E-02
119GO:0046872: metal ion binding2.54E-02
120GO:0008233: peptidase activity2.78E-02
121GO:0004812: aminoacyl-tRNA ligase activity3.09E-02
122GO:0050662: coenzyme binding3.63E-02
123GO:0005355: glucose transmembrane transporter activity3.63E-02
124GO:0005515: protein binding4.00E-02
125GO:0048038: quinone binding4.01E-02
126GO:0004518: nuclease activity4.20E-02
127GO:0000156: phosphorelay response regulator activity4.39E-02
128GO:0030246: carbohydrate binding4.76E-02
129GO:0008237: metallopeptidase activity4.79E-02
130GO:0016597: amino acid binding5.00E-02
131GO:0009055: electron carrier activity5.00E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0009507: chloroplast2.75E-81
5GO:0009535: chloroplast thylakoid membrane2.43E-51
6GO:0009534: chloroplast thylakoid1.72E-34
7GO:0009570: chloroplast stroma3.28E-28
8GO:0009941: chloroplast envelope1.12E-27
9GO:0009579: thylakoid4.84E-17
10GO:0009543: chloroplast thylakoid lumen5.47E-17
11GO:0031977: thylakoid lumen1.82E-10
12GO:0031969: chloroplast membrane9.46E-08
13GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.65E-07
14GO:0010287: plastoglobule3.32E-06
15GO:0042651: thylakoid membrane1.17E-05
16GO:0009523: photosystem II5.31E-05
17GO:0009654: photosystem II oxygen evolving complex2.25E-04
18GO:0016021: integral component of membrane3.67E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.94E-04
20GO:0009515: granal stacked thylakoid3.94E-04
21GO:0045239: tricarboxylic acid cycle enzyme complex3.94E-04
22GO:0031361: integral component of thylakoid membrane3.94E-04
23GO:0009782: photosystem I antenna complex3.94E-04
24GO:0019898: extrinsic component of membrane5.97E-04
25GO:0080085: signal recognition particle, chloroplast targeting8.55E-04
26GO:0032040: small-subunit processome1.20E-03
27GO:0009897: external side of plasma membrane1.39E-03
28GO:0033281: TAT protein transport complex1.39E-03
29GO:0030095: chloroplast photosystem II1.53E-03
30GO:0030076: light-harvesting complex1.71E-03
31GO:0009526: plastid envelope2.69E-03
32GO:0055035: plastid thylakoid membrane3.44E-03
33GO:0009512: cytochrome b6f complex3.44E-03
34GO:0009533: chloroplast stromal thylakoid6.06E-03
35GO:0009706: chloroplast inner membrane6.19E-03
36GO:0010319: stromule6.71E-03
37GO:0009501: amyloplast7.05E-03
38GO:0016020: membrane7.15E-03
39GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.09E-03
40GO:0009508: plastid chromosome1.54E-02
41GO:0048046: apoplast2.61E-02
42GO:0005871: kinesin complex3.09E-02
43GO:0005770: late endosome3.45E-02
44GO:0005840: ribosome3.49E-02
45GO:0009522: photosystem I3.63E-02
46GO:0009536: plastid4.51E-02
47GO:0009295: nucleoid4.79E-02
48GO:0005759: mitochondrial matrix4.87E-02
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Gene type



Gene DE type