Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G16140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000372: Group I intron splicing0.00E+00
2GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
3GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
4GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:0061635: regulation of protein complex stability0.00E+00
10GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
11GO:0015979: photosynthesis3.09E-13
12GO:0010027: thylakoid membrane organization1.24E-08
13GO:0032544: plastid translation3.88E-07
14GO:0009773: photosynthetic electron transport in photosystem I1.96E-06
15GO:1902326: positive regulation of chlorophyll biosynthetic process7.32E-06
16GO:0043085: positive regulation of catalytic activity7.04E-05
17GO:0015995: chlorophyll biosynthetic process1.73E-04
18GO:0009735: response to cytokinin1.94E-04
19GO:0018298: protein-chromophore linkage2.07E-04
20GO:0042549: photosystem II stabilization2.16E-04
21GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.16E-04
22GO:0006655: phosphatidylglycerol biosynthetic process2.16E-04
23GO:1901259: chloroplast rRNA processing2.91E-04
24GO:0008152: metabolic process3.11E-04
25GO:0006400: tRNA modification3.76E-04
26GO:0010196: nonphotochemical quenching3.76E-04
27GO:0043953: protein transport by the Tat complex4.05E-04
28GO:0065002: intracellular protein transmembrane transport4.05E-04
29GO:0043686: co-translational protein modification4.05E-04
30GO:0034337: RNA folding4.05E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway4.05E-04
32GO:0043489: RNA stabilization4.05E-04
33GO:0009657: plastid organization5.75E-04
34GO:0071482: cellular response to light stimulus5.75E-04
35GO:0000373: Group II intron splicing6.89E-04
36GO:0034755: iron ion transmembrane transport8.76E-04
37GO:0009662: etioplast organization8.76E-04
38GO:0006729: tetrahydrobiopterin biosynthetic process8.76E-04
39GO:0006568: tryptophan metabolic process8.76E-04
40GO:0030388: fructose 1,6-bisphosphate metabolic process8.76E-04
41GO:0010024: phytochromobilin biosynthetic process8.76E-04
42GO:0010275: NAD(P)H dehydrogenase complex assembly8.76E-04
43GO:0035304: regulation of protein dephosphorylation8.76E-04
44GO:0080005: photosystem stoichiometry adjustment8.76E-04
45GO:0010115: regulation of abscisic acid biosynthetic process8.76E-04
46GO:1900871: chloroplast mRNA modification8.76E-04
47GO:0045036: protein targeting to chloroplast9.46E-04
48GO:0016024: CDP-diacylglycerol biosynthetic process1.24E-03
49GO:0009658: chloroplast organization1.31E-03
50GO:0006094: gluconeogenesis1.41E-03
51GO:0010581: regulation of starch biosynthetic process1.42E-03
52GO:0006788: heme oxidation1.42E-03
53GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.42E-03
54GO:0051604: protein maturation1.42E-03
55GO:0030865: cortical cytoskeleton organization1.42E-03
56GO:0000913: preprophase band assembly1.42E-03
57GO:1902448: positive regulation of shade avoidance1.42E-03
58GO:0006000: fructose metabolic process1.42E-03
59GO:0090391: granum assembly1.42E-03
60GO:0006518: peptide metabolic process1.42E-03
61GO:0010207: photosystem II assembly1.59E-03
62GO:0010025: wax biosynthetic process1.99E-03
63GO:0010088: phloem development2.06E-03
64GO:0055070: copper ion homeostasis2.06E-03
65GO:2001141: regulation of RNA biosynthetic process2.06E-03
66GO:0009152: purine ribonucleotide biosynthetic process2.06E-03
67GO:0046653: tetrahydrofolate metabolic process2.06E-03
68GO:0034059: response to anoxia2.06E-03
69GO:0010239: chloroplast mRNA processing2.06E-03
70GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
71GO:0034599: cellular response to oxidative stress2.17E-03
72GO:0045454: cell redox homeostasis2.64E-03
73GO:0010021: amylopectin biosynthetic process2.76E-03
74GO:0009765: photosynthesis, light harvesting2.76E-03
75GO:0006109: regulation of carbohydrate metabolic process2.76E-03
76GO:0045727: positive regulation of translation2.76E-03
77GO:0015994: chlorophyll metabolic process2.76E-03
78GO:0006869: lipid transport3.11E-03
79GO:0006564: L-serine biosynthetic process3.54E-03
80GO:0045038: protein import into chloroplast thylakoid membrane3.54E-03
81GO:0031365: N-terminal protein amino acid modification3.54E-03
82GO:0035434: copper ion transmembrane transport3.54E-03
83GO:0006461: protein complex assembly3.54E-03
84GO:0006662: glycerol ether metabolic process4.38E-03
85GO:0006561: proline biosynthetic process4.38E-03
86GO:0010304: PSII associated light-harvesting complex II catabolic process4.38E-03
87GO:0000470: maturation of LSU-rRNA4.38E-03
88GO:0016554: cytidine to uridine editing4.38E-03
89GO:0010190: cytochrome b6f complex assembly4.38E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.38E-03
91GO:0008654: phospholipid biosynthetic process5.06E-03
92GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.27E-03
93GO:0030488: tRNA methylation5.27E-03
94GO:0010019: chloroplast-nucleus signaling pathway5.27E-03
95GO:0016032: viral process5.79E-03
96GO:1900057: positive regulation of leaf senescence6.23E-03
97GO:0015693: magnesium ion transport6.23E-03
98GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.23E-03
99GO:0009567: double fertilization forming a zygote and endosperm6.57E-03
100GO:0006605: protein targeting7.25E-03
101GO:0006353: DNA-templated transcription, termination7.25E-03
102GO:0048564: photosystem I assembly7.25E-03
103GO:0008610: lipid biosynthetic process7.25E-03
104GO:0009642: response to light intensity7.25E-03
105GO:0006002: fructose 6-phosphate metabolic process8.32E-03
106GO:0015996: chlorophyll catabolic process8.32E-03
107GO:0019430: removal of superoxide radicals8.32E-03
108GO:0009051: pentose-phosphate shunt, oxidative branch9.45E-03
109GO:0006098: pentose-phosphate shunt9.45E-03
110GO:0010206: photosystem II repair9.45E-03
111GO:0042744: hydrogen peroxide catabolic process1.03E-02
112GO:0010205: photoinhibition1.06E-02
113GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
114GO:1900865: chloroplast RNA modification1.06E-02
115GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
116GO:0006535: cysteine biosynthetic process from serine1.19E-02
117GO:0009631: cold acclimation1.19E-02
118GO:0009688: abscisic acid biosynthetic process1.19E-02
119GO:0009637: response to blue light1.30E-02
120GO:1903507: negative regulation of nucleic acid-templated transcription1.31E-02
121GO:0006879: cellular iron ion homeostasis1.31E-02
122GO:0006415: translational termination1.31E-02
123GO:0006352: DNA-templated transcription, initiation1.31E-02
124GO:0009750: response to fructose1.31E-02
125GO:0019684: photosynthesis, light reaction1.31E-02
126GO:0009073: aromatic amino acid family biosynthetic process1.31E-02
127GO:0010152: pollen maturation1.45E-02
128GO:0055085: transmembrane transport1.57E-02
129GO:0010628: positive regulation of gene expression1.58E-02
130GO:0006006: glucose metabolic process1.58E-02
131GO:0009718: anthocyanin-containing compound biosynthetic process1.58E-02
132GO:0009767: photosynthetic electron transport chain1.58E-02
133GO:0005986: sucrose biosynthetic process1.58E-02
134GO:0010114: response to red light1.69E-02
135GO:0019253: reductive pentose-phosphate cycle1.73E-02
136GO:0010143: cutin biosynthetic process1.73E-02
137GO:0005985: sucrose metabolic process1.87E-02
138GO:0019344: cysteine biosynthetic process2.18E-02
139GO:0006364: rRNA processing2.28E-02
140GO:0009695: jasmonic acid biosynthetic process2.33E-02
141GO:0009768: photosynthesis, light harvesting in photosystem I2.33E-02
142GO:0042254: ribosome biogenesis2.33E-02
143GO:0008299: isoprenoid biosynthetic process2.33E-02
144GO:0031408: oxylipin biosynthetic process2.50E-02
145GO:0035428: hexose transmembrane transport2.66E-02
146GO:0016226: iron-sulfur cluster assembly2.66E-02
147GO:2000022: regulation of jasmonic acid mediated signaling pathway2.66E-02
148GO:0006096: glycolytic process2.69E-02
149GO:0055114: oxidation-reduction process2.75E-02
150GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.83E-02
151GO:0006412: translation2.97E-02
152GO:0009561: megagametogenesis3.01E-02
153GO:0009306: protein secretion3.01E-02
154GO:0010089: xylem development3.01E-02
155GO:0048443: stamen development3.01E-02
156GO:0016117: carotenoid biosynthetic process3.19E-02
157GO:0009416: response to light stimulus3.29E-02
158GO:0042335: cuticle development3.37E-02
159GO:0080022: primary root development3.37E-02
160GO:0000413: protein peptidyl-prolyl isomerization3.37E-02
161GO:0000226: microtubule cytoskeleton organization3.37E-02
162GO:0010182: sugar mediated signaling pathway3.55E-02
163GO:0046323: glucose import3.55E-02
164GO:0019252: starch biosynthetic process3.93E-02
165GO:0000302: response to reactive oxygen species4.12E-02
166GO:0071554: cell wall organization or biogenesis4.12E-02
167GO:0030163: protein catabolic process4.52E-02
168GO:0032259: methylation4.57E-02
169GO:0009828: plant-type cell wall loosening4.73E-02
170GO:0006457: protein folding4.77E-02
RankGO TermAdjusted P value
1GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
2GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
3GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
4GO:0046408: chlorophyll synthetase activity0.00E+00
5GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
6GO:0005048: signal sequence binding0.00E+00
7GO:0046608: carotenoid isomerase activity0.00E+00
8GO:0038198: auxin receptor activity0.00E+00
9GO:0010301: xanthoxin dehydrogenase activity0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0019843: rRNA binding1.87E-08
12GO:0008266: poly(U) RNA binding4.87E-06
13GO:0008047: enzyme activator activity5.58E-05
14GO:0043495: protein anchor9.74E-05
15GO:0016168: chlorophyll binding1.43E-04
16GO:0005528: FK506 binding2.06E-04
17GO:0022891: substrate-specific transmembrane transporter activity3.44E-04
18GO:0019899: enzyme binding3.76E-04
19GO:0004321: fatty-acyl-CoA synthase activity4.05E-04
20GO:0034256: chlorophyll(ide) b reductase activity4.05E-04
21GO:0042586: peptide deformylase activity4.05E-04
22GO:0005080: protein kinase C binding4.05E-04
23GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.05E-04
24GO:0050139: nicotinate-N-glucosyltransferase activity4.05E-04
25GO:0030794: (S)-coclaurine-N-methyltransferase activity4.05E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity4.05E-04
27GO:0010242: oxygen evolving activity4.05E-04
28GO:0004791: thioredoxin-disulfide reductase activity5.73E-04
29GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.87E-04
30GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor8.06E-04
31GO:0000822: inositol hexakisphosphate binding8.76E-04
32GO:0047746: chlorophyllase activity8.76E-04
33GO:0009977: proton motive force dependent protein transmembrane transporter activity8.76E-04
34GO:0004617: phosphoglycerate dehydrogenase activity8.76E-04
35GO:0004047: aminomethyltransferase activity8.76E-04
36GO:0033201: alpha-1,4-glucan synthase activity8.76E-04
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.76E-04
38GO:0000774: adenyl-nucleotide exchange factor activity8.76E-04
39GO:0016630: protochlorophyllide reductase activity8.76E-04
40GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.76E-04
41GO:0016787: hydrolase activity1.23E-03
42GO:0051082: unfolded protein binding1.25E-03
43GO:0004022: alcohol dehydrogenase (NAD) activity1.41E-03
44GO:0031072: heat shock protein binding1.41E-03
45GO:0004565: beta-galactosidase activity1.41E-03
46GO:0004751: ribose-5-phosphate isomerase activity1.42E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.42E-03
48GO:0070402: NADPH binding1.42E-03
49GO:0008864: formyltetrahydrofolate deformylase activity1.42E-03
50GO:0016531: copper chaperone activity1.42E-03
51GO:0004373: glycogen (starch) synthase activity1.42E-03
52GO:0019829: cation-transporting ATPase activity1.42E-03
53GO:0016149: translation release factor activity, codon specific2.06E-03
54GO:0016851: magnesium chelatase activity2.06E-03
55GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.06E-03
56GO:0043023: ribosomal large subunit binding2.06E-03
57GO:0001872: (1->3)-beta-D-glucan binding2.06E-03
58GO:0004392: heme oxygenase (decyclizing) activity2.76E-03
59GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.76E-03
60GO:0001053: plastid sigma factor activity2.76E-03
61GO:0010011: auxin binding2.76E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity2.76E-03
63GO:0016836: hydro-lyase activity2.76E-03
64GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.76E-03
65GO:0016987: sigma factor activity2.76E-03
66GO:0009011: starch synthase activity2.76E-03
67GO:0003959: NADPH dehydrogenase activity3.54E-03
68GO:0047134: protein-disulfide reductase activity3.76E-03
69GO:0042802: identical protein binding4.15E-03
70GO:0016688: L-ascorbate peroxidase activity4.38E-03
71GO:0042578: phosphoric ester hydrolase activity4.38E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.38E-03
73GO:0004605: phosphatidate cytidylyltransferase activity4.38E-03
74GO:0004332: fructose-bisphosphate aldolase activity4.38E-03
75GO:0004130: cytochrome-c peroxidase activity4.38E-03
76GO:0004124: cysteine synthase activity5.27E-03
77GO:0004620: phospholipase activity6.23E-03
78GO:0043022: ribosome binding7.25E-03
79GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
80GO:0008312: 7S RNA binding7.25E-03
81GO:0016597: amino acid binding7.41E-03
82GO:0005375: copper ion transmembrane transporter activity8.32E-03
83GO:0005525: GTP binding8.33E-03
84GO:0003723: RNA binding8.93E-03
85GO:0003747: translation release factor activity9.45E-03
86GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.45E-03
87GO:0016207: 4-coumarate-CoA ligase activity9.45E-03
88GO:0008236: serine-type peptidase activity9.75E-03
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.03E-02
90GO:0005381: iron ion transmembrane transporter activity1.06E-02
91GO:0005509: calcium ion binding1.07E-02
92GO:0047372: acylglycerol lipase activity1.31E-02
93GO:0009055: electron carrier activity1.56E-02
94GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.58E-02
95GO:0015095: magnesium ion transmembrane transporter activity1.58E-02
96GO:0009982: pseudouridine synthase activity1.58E-02
97GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.78E-02
98GO:0003735: structural constituent of ribosome1.86E-02
99GO:0031409: pigment binding2.02E-02
100GO:0008168: methyltransferase activity2.17E-02
101GO:0003714: transcription corepressor activity2.18E-02
102GO:0051536: iron-sulfur cluster binding2.18E-02
103GO:0004857: enzyme inhibitor activity2.18E-02
104GO:0008289: lipid binding2.30E-02
105GO:0051087: chaperone binding2.33E-02
106GO:0043424: protein histidine kinase binding2.33E-02
107GO:0004176: ATP-dependent peptidase activity2.50E-02
108GO:0003729: mRNA binding2.65E-02
109GO:0015035: protein disulfide oxidoreductase activity3.34E-02
110GO:0016746: transferase activity, transferring acyl groups3.34E-02
111GO:0016853: isomerase activity3.74E-02
112GO:0005355: glucose transmembrane transporter activity3.74E-02
113GO:0050662: coenzyme binding3.74E-02
114GO:0003824: catalytic activity4.02E-02
115GO:0005215: transporter activity4.07E-02
116GO:0016740: transferase activity4.38E-02
117GO:0000156: phosphorelay response regulator activity4.52E-02
118GO:0016791: phosphatase activity4.73E-02
119GO:0005515: protein binding4.75E-02
120GO:0003924: GTPase activity4.82E-02
121GO:0008237: metallopeptidase activity4.93E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0009575: chromoplast stroma0.00E+00
3GO:0009507: chloroplast4.59E-77
4GO:0009535: chloroplast thylakoid membrane3.56E-41
5GO:0009570: chloroplast stroma6.65E-38
6GO:0009941: chloroplast envelope1.48E-29
7GO:0009534: chloroplast thylakoid3.98E-27
8GO:0009579: thylakoid3.67E-23
9GO:0009543: chloroplast thylakoid lumen2.13E-18
10GO:0031977: thylakoid lumen4.31E-15
11GO:0009654: photosystem II oxygen evolving complex7.20E-09
12GO:0019898: extrinsic component of membrane8.96E-08
13GO:0031969: chloroplast membrane1.14E-07
14GO:0009533: chloroplast stromal thylakoid1.11E-05
15GO:0009523: photosystem II5.72E-05
16GO:0030095: chloroplast photosystem II1.28E-04
17GO:0042651: thylakoid membrane2.37E-04
18GO:0010287: plastoglobule3.06E-04
19GO:0009515: granal stacked thylakoid4.05E-04
20GO:0009547: plastid ribosome4.05E-04
21GO:0031361: integral component of thylakoid membrane4.05E-04
22GO:0005840: ribosome5.19E-04
23GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.89E-04
24GO:0009536: plastid7.85E-04
25GO:0080085: signal recognition particle, chloroplast targeting8.76E-04
26GO:0030981: cortical microtubule cytoskeleton8.76E-04
27GO:0009509: chromoplast1.42E-03
28GO:0033281: TAT protein transport complex1.42E-03
29GO:0010007: magnesium chelatase complex1.42E-03
30GO:0009532: plastid stroma2.67E-03
31GO:0009526: plastid envelope2.76E-03
32GO:0055035: plastid thylakoid membrane3.54E-03
33GO:0009501: amyloplast7.25E-03
34GO:0030529: intracellular ribonucleoprotein complex7.85E-03
35GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.32E-03
36GO:0046930: pore complex8.32E-03
37GO:0016020: membrane8.59E-03
38GO:0005623: cell8.99E-03
39GO:0008180: COP9 signalosome9.45E-03
40GO:0019005: SCF ubiquitin ligase complex1.03E-02
41GO:0000311: plastid large ribosomal subunit1.45E-02
42GO:0032040: small-subunit processome1.45E-02
43GO:0000312: plastid small ribosomal subunit1.73E-02
44GO:0046658: anchored component of plasma membrane1.87E-02
45GO:0030076: light-harvesting complex1.87E-02
46GO:0015935: small ribosomal subunit2.50E-02
47GO:0009522: photosystem I3.74E-02
48GO:0010319: stromule4.93E-02
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Gene type



Gene DE type