Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G14460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000372: Group I intron splicing0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
5GO:0034337: RNA folding0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
10GO:0016553: base conversion or substitution editing0.00E+00
11GO:0010027: thylakoid membrane organization6.86E-11
12GO:0032544: plastid translation1.61E-07
13GO:0015979: photosynthesis4.47E-07
14GO:0009773: photosynthetic electron transport in photosystem I8.32E-07
15GO:0006655: phosphatidylglycerol biosynthetic process2.06E-06
16GO:0090391: granum assembly1.57E-05
17GO:0010207: photosystem II assembly7.21E-05
18GO:0015995: chlorophyll biosynthetic process8.72E-05
19GO:0009658: chloroplast organization1.21E-04
20GO:0042549: photosystem II stabilization1.43E-04
21GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.43E-04
22GO:1901259: chloroplast rRNA processing1.95E-04
23GO:0010196: nonphotochemical quenching2.54E-04
24GO:0009735: response to cytokinin3.07E-04
25GO:0043489: RNA stabilization3.11E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.11E-04
27GO:0000481: maturation of 5S rRNA3.11E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.11E-04
29GO:0065002: intracellular protein transmembrane transport3.11E-04
30GO:0006430: lysyl-tRNA aminoacylation3.11E-04
31GO:0071588: hydrogen peroxide mediated signaling pathway3.11E-04
32GO:0043953: protein transport by the Tat complex3.11E-04
33GO:0071482: cellular response to light stimulus3.94E-04
34GO:0010205: photoinhibition5.59E-04
35GO:1900871: chloroplast mRNA modification6.81E-04
36GO:0018026: peptidyl-lysine monomethylation6.81E-04
37GO:0006729: tetrahydrobiopterin biosynthetic process6.81E-04
38GO:0006568: tryptophan metabolic process6.81E-04
39GO:0030388: fructose 1,6-bisphosphate metabolic process6.81E-04
40GO:0010289: homogalacturonan biosynthetic process6.81E-04
41GO:0010270: photosystem II oxygen evolving complex assembly6.81E-04
42GO:0010275: NAD(P)H dehydrogenase complex assembly6.81E-04
43GO:0035304: regulation of protein dephosphorylation6.81E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process6.81E-04
45GO:0080005: photosystem stoichiometry adjustment6.81E-04
46GO:0043085: positive regulation of catalytic activity7.52E-04
47GO:0006412: translation7.66E-04
48GO:0016024: CDP-diacylglycerol biosynthetic process8.60E-04
49GO:0006518: peptide metabolic process1.10E-03
50GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.10E-03
51GO:0051604: protein maturation1.10E-03
52GO:1902448: positive regulation of shade avoidance1.10E-03
53GO:0006000: fructose metabolic process1.10E-03
54GO:0010581: regulation of starch biosynthetic process1.10E-03
55GO:0010088: phloem development1.58E-03
56GO:1901332: negative regulation of lateral root development1.58E-03
57GO:2001141: regulation of RNA biosynthetic process1.58E-03
58GO:0009152: purine ribonucleotide biosynthetic process1.58E-03
59GO:0046653: tetrahydrofolate metabolic process1.58E-03
60GO:0010239: chloroplast mRNA processing1.58E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.58E-03
62GO:0010021: amylopectin biosynthetic process2.12E-03
63GO:0006661: phosphatidylinositol biosynthetic process2.12E-03
64GO:0009765: photosynthesis, light harvesting2.12E-03
65GO:0006109: regulation of carbohydrate metabolic process2.12E-03
66GO:0045727: positive regulation of translation2.12E-03
67GO:0015994: chlorophyll metabolic process2.12E-03
68GO:0071369: cellular response to ethylene stimulus2.17E-03
69GO:0008152: metabolic process2.28E-03
70GO:2000762: regulation of phenylpropanoid metabolic process2.71E-03
71GO:0006564: L-serine biosynthetic process2.71E-03
72GO:0045038: protein import into chloroplast thylakoid membrane2.71E-03
73GO:0042254: ribosome biogenesis3.18E-03
74GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.35E-03
75GO:0006751: glutathione catabolic process3.35E-03
76GO:0000470: maturation of LSU-rRNA3.35E-03
77GO:0016554: cytidine to uridine editing3.35E-03
78GO:0006828: manganese ion transport3.35E-03
79GO:0010190: cytochrome b6f complex assembly3.35E-03
80GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.03E-03
81GO:0010019: chloroplast-nucleus signaling pathway4.03E-03
82GO:0009567: double fertilization forming a zygote and endosperm4.45E-03
83GO:1900057: positive regulation of leaf senescence4.76E-03
84GO:0006400: tRNA modification4.76E-03
85GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.76E-03
86GO:0006353: DNA-templated transcription, termination5.53E-03
87GO:0006605: protein targeting5.53E-03
88GO:0032508: DNA duplex unwinding5.53E-03
89GO:0010492: maintenance of shoot apical meristem identity5.53E-03
90GO:0048564: photosystem I assembly5.53E-03
91GO:0008610: lipid biosynthetic process5.53E-03
92GO:0009642: response to light intensity5.53E-03
93GO:0006002: fructose 6-phosphate metabolic process6.33E-03
94GO:0019430: removal of superoxide radicals6.33E-03
95GO:0006754: ATP biosynthetic process7.19E-03
96GO:0000373: Group II intron splicing7.19E-03
97GO:0010206: photosystem II repair7.19E-03
98GO:0048507: meristem development7.19E-03
99GO:0009631: cold acclimation8.02E-03
100GO:0006779: porphyrin-containing compound biosynthetic process8.07E-03
101GO:0042761: very long-chain fatty acid biosynthetic process8.07E-03
102GO:1900865: chloroplast RNA modification8.07E-03
103GO:0010380: regulation of chlorophyll biosynthetic process8.07E-03
104GO:0006457: protein folding8.25E-03
105GO:0016051: carbohydrate biosynthetic process8.80E-03
106GO:0006535: cysteine biosynthetic process from serine9.00E-03
107GO:0045036: protein targeting to chloroplast9.00E-03
108GO:0006782: protoporphyrinogen IX biosynthetic process9.00E-03
109GO:0034599: cellular response to oxidative stress9.20E-03
110GO:0009073: aromatic amino acid family biosynthetic process9.96E-03
111GO:0006415: translational termination9.96E-03
112GO:1903507: negative regulation of nucleic acid-templated transcription9.96E-03
113GO:0006352: DNA-templated transcription, initiation9.96E-03
114GO:0006816: calcium ion transport9.96E-03
115GO:0009698: phenylpropanoid metabolic process9.96E-03
116GO:0019684: photosynthesis, light reaction9.96E-03
117GO:0009409: response to cold1.05E-02
118GO:0010628: positive regulation of gene expression1.20E-02
119GO:0009718: anthocyanin-containing compound biosynthetic process1.20E-02
120GO:0006094: gluconeogenesis1.20E-02
121GO:0005986: sucrose biosynthetic process1.20E-02
122GO:0055114: oxidation-reduction process1.25E-02
123GO:0019253: reductive pentose-phosphate cycle1.31E-02
124GO:0071732: cellular response to nitric oxide1.42E-02
125GO:0005985: sucrose metabolic process1.42E-02
126GO:0006636: unsaturated fatty acid biosynthetic process1.53E-02
127GO:0010025: wax biosynthetic process1.53E-02
128GO:0006364: rRNA processing1.54E-02
129GO:0019344: cysteine biosynthetic process1.65E-02
130GO:0009695: jasmonic acid biosynthetic process1.77E-02
131GO:0008299: isoprenoid biosynthetic process1.77E-02
132GO:0006418: tRNA aminoacylation for protein translation1.77E-02
133GO:0016114: terpenoid biosynthetic process1.89E-02
134GO:0031408: oxylipin biosynthetic process1.89E-02
135GO:0035428: hexose transmembrane transport2.01E-02
136GO:2000022: regulation of jasmonic acid mediated signaling pathway2.01E-02
137GO:0016226: iron-sulfur cluster assembly2.01E-02
138GO:0045893: positive regulation of transcription, DNA-templated2.26E-02
139GO:0009306: protein secretion2.27E-02
140GO:0010089: xylem development2.27E-02
141GO:0016117: carotenoid biosynthetic process2.41E-02
142GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
143GO:0015991: ATP hydrolysis coupled proton transport2.55E-02
144GO:0006662: glycerol ether metabolic process2.68E-02
145GO:0046323: glucose import2.68E-02
146GO:0019252: starch biosynthetic process2.97E-02
147GO:0008654: phospholipid biosynthetic process2.97E-02
148GO:0000302: response to reactive oxygen species3.12E-02
149GO:0042744: hydrogen peroxide catabolic process3.12E-02
150GO:0006397: mRNA processing3.14E-02
151GO:0016032: viral process3.27E-02
152GO:0030163: protein catabolic process3.42E-02
153GO:0071281: cellular response to iron ion3.42E-02
154GO:0018298: protein-chromophore linkage4.89E-02
155GO:0009817: defense response to fungus, incompatible interaction4.89E-02
156GO:0048481: plant ovule development4.89E-02
RankGO TermAdjusted P value
1GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0019843: rRNA binding1.40E-10
9GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.30E-08
10GO:0005528: FK506 binding9.38E-08
11GO:0008266: poly(U) RNA binding2.10E-06
12GO:0045485: omega-6 fatty acid desaturase activity3.11E-04
13GO:0004321: fatty-acyl-CoA synthase activity3.11E-04
14GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.11E-04
15GO:0005080: protein kinase C binding3.11E-04
16GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.11E-04
17GO:0050139: nicotinate-N-glucosyltransferase activity3.11E-04
18GO:0004425: indole-3-glycerol-phosphate synthase activity3.11E-04
19GO:0004824: lysine-tRNA ligase activity3.11E-04
20GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.11E-04
21GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity3.11E-04
22GO:0017169: CDP-alcohol phosphatidyltransferase activity3.11E-04
23GO:0004856: xylulokinase activity3.11E-04
24GO:0010242: oxygen evolving activity3.11E-04
25GO:0008047: enzyme activator activity6.53E-04
26GO:0047746: chlorophyllase activity6.81E-04
27GO:0003839: gamma-glutamylcyclotransferase activity6.81E-04
28GO:0009977: proton motive force dependent protein transmembrane transporter activity6.81E-04
29GO:0004617: phosphoglycerate dehydrogenase activity6.81E-04
30GO:0033201: alpha-1,4-glucan synthase activity6.81E-04
31GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.81E-04
32GO:0016630: protochlorophyllide reductase activity6.81E-04
33GO:0008236: serine-type peptidase activity8.80E-04
34GO:0004565: beta-galactosidase activity9.73E-04
35GO:0003735: structural constituent of ribosome9.88E-04
36GO:0004751: ribose-5-phosphate isomerase activity1.10E-03
37GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.10E-03
38GO:0070402: NADPH binding1.10E-03
39GO:0008864: formyltetrahydrofolate deformylase activity1.10E-03
40GO:0004373: glycogen (starch) synthase activity1.10E-03
41GO:0016787: hydrolase activity1.19E-03
42GO:0016149: translation release factor activity, codon specific1.58E-03
43GO:0016851: magnesium chelatase activity1.58E-03
44GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.58E-03
45GO:0043023: ribosomal large subunit binding1.58E-03
46GO:0008097: 5S rRNA binding1.58E-03
47GO:0043495: protein anchor2.12E-03
48GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.12E-03
49GO:0016279: protein-lysine N-methyltransferase activity2.12E-03
50GO:0001053: plastid sigma factor activity2.12E-03
51GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.12E-03
52GO:0004045: aminoacyl-tRNA hydrolase activity2.12E-03
53GO:0016987: sigma factor activity2.12E-03
54GO:0009011: starch synthase activity2.12E-03
55GO:0003723: RNA binding2.68E-03
56GO:0004040: amidase activity2.71E-03
57GO:0003959: NADPH dehydrogenase activity2.71E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor2.71E-03
59GO:0004791: thioredoxin-disulfide reductase activity3.20E-03
60GO:0016491: oxidoreductase activity3.31E-03
61GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.35E-03
62GO:0016688: L-ascorbate peroxidase activity3.35E-03
63GO:0004130: cytochrome-c peroxidase activity3.35E-03
64GO:0004124: cysteine synthase activity4.03E-03
65GO:0015631: tubulin binding4.03E-03
66GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.19E-03
67GO:0003729: mRNA binding4.32E-03
68GO:0019899: enzyme binding4.76E-03
69GO:0004620: phospholipase activity4.76E-03
70GO:0043022: ribosome binding5.53E-03
71GO:0008312: 7S RNA binding5.53E-03
72GO:0016168: chlorophyll binding5.62E-03
73GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.19E-03
74GO:0003747: translation release factor activity7.19E-03
75GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.19E-03
76GO:0016207: 4-coumarate-CoA ligase activity7.19E-03
77GO:0030145: manganese ion binding8.02E-03
78GO:0005384: manganese ion transmembrane transporter activity8.07E-03
79GO:0015020: glucuronosyltransferase activity9.00E-03
80GO:0008081: phosphoric diester hydrolase activity1.20E-02
81GO:0004022: alcohol dehydrogenase (NAD) activity1.20E-02
82GO:0015095: magnesium ion transmembrane transporter activity1.20E-02
83GO:0031072: heat shock protein binding1.20E-02
84GO:0005509: calcium ion binding1.56E-02
85GO:0003714: transcription corepressor activity1.65E-02
86GO:0051536: iron-sulfur cluster binding1.65E-02
87GO:0004857: enzyme inhibitor activity1.65E-02
88GO:0043424: protein histidine kinase binding1.77E-02
89GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.01E-02
90GO:0016874: ligase activity2.06E-02
91GO:0022891: substrate-specific transmembrane transporter activity2.14E-02
92GO:0051082: unfolded protein binding2.19E-02
93GO:0047134: protein-disulfide reductase activity2.41E-02
94GO:0004812: aminoacyl-tRNA ligase activity2.41E-02
95GO:0010181: FMN binding2.83E-02
96GO:0050662: coenzyme binding2.83E-02
97GO:0016853: isomerase activity2.83E-02
98GO:0005355: glucose transmembrane transporter activity2.83E-02
99GO:0004252: serine-type endopeptidase activity3.05E-02
100GO:0004518: nuclease activity3.27E-02
101GO:0000156: phosphorelay response regulator activity3.42E-02
102GO:0005525: GTP binding3.83E-02
103GO:0016597: amino acid binding3.89E-02
104GO:0008375: acetylglucosaminyltransferase activity4.38E-02
105GO:0004721: phosphoprotein phosphatase activity4.55E-02
106GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.79E-02
107GO:0042802: identical protein binding4.79E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.89E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast8.04E-68
4GO:0009570: chloroplast stroma9.61E-44
5GO:0009535: chloroplast thylakoid membrane1.07E-27
6GO:0009941: chloroplast envelope4.74E-26
7GO:0009579: thylakoid1.50E-22
8GO:0009534: chloroplast thylakoid3.75E-21
9GO:0009543: chloroplast thylakoid lumen9.61E-20
10GO:0031977: thylakoid lumen2.06E-14
11GO:0009654: photosystem II oxygen evolving complex1.25E-07
12GO:0019898: extrinsic component of membrane1.01E-06
13GO:0031969: chloroplast membrane2.93E-05
14GO:0005840: ribosome3.67E-05
15GO:0009533: chloroplast stromal thylakoid2.54E-04
16GO:0009547: plastid ribosome3.11E-04
17GO:0031361: integral component of thylakoid membrane3.11E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.11E-04
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.73E-04
20GO:0030529: intracellular ribonucleoprotein complex6.71E-04
21GO:0080085: signal recognition particle, chloroplast targeting6.81E-04
22GO:0032040: small-subunit processome8.60E-04
23GO:0009536: plastid9.03E-04
24GO:0030095: chloroplast photosystem II1.09E-03
25GO:0009509: chromoplast1.10E-03
26GO:0010007: magnesium chelatase complex1.10E-03
27GO:0033281: TAT protein transport complex1.10E-03
28GO:0009532: plastid stroma1.82E-03
29GO:0009526: plastid envelope2.12E-03
30GO:0055035: plastid thylakoid membrane2.71E-03
31GO:0009706: chloroplast inner membrane3.97E-03
32GO:0010287: plastoglobule4.93E-03
33GO:0009501: amyloplast5.53E-03
34GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.33E-03
35GO:0008180: COP9 signalosome7.19E-03
36GO:0055028: cortical microtubule9.00E-03
37GO:0000311: plastid large ribosomal subunit1.10E-02
38GO:0000312: plastid small ribosomal subunit1.31E-02
39GO:0016020: membrane1.54E-02
40GO:0042651: thylakoid membrane1.77E-02
41GO:0005623: cell2.82E-02
42GO:0009522: photosystem I2.83E-02
43GO:0048046: apoplast2.85E-02
44GO:0009523: photosystem II2.97E-02
45GO:0016592: mediator complex3.27E-02
46GO:0010319: stromule3.73E-02
47GO:0019005: SCF ubiquitin ligase complex4.89E-02
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Gene type



Gene DE type