Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0009249: protein lipoylation0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0009106: lipoate metabolic process0.00E+00
8GO:0006573: valine metabolic process0.00E+00
9GO:0009658: chloroplast organization1.28E-07
10GO:0019464: glycine decarboxylation via glycine cleavage system5.24E-07
11GO:0015979: photosynthesis5.72E-07
12GO:0009773: photosynthetic electron transport in photosystem I9.47E-07
13GO:0042026: protein refolding3.96E-06
14GO:0010275: NAD(P)H dehydrogenase complex assembly4.77E-06
15GO:0061077: chaperone-mediated protein folding7.83E-06
16GO:0009735: response to cytokinin1.15E-05
17GO:0032544: plastid translation1.38E-05
18GO:0016117: carotenoid biosynthetic process1.64E-05
19GO:0006810: transport3.48E-05
20GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.75E-05
21GO:0046686: response to cadmium ion4.41E-05
22GO:0009767: photosynthetic electron transport chain6.51E-05
23GO:0006546: glycine catabolic process6.70E-05
24GO:0019253: reductive pentose-phosphate cycle7.88E-05
25GO:0016123: xanthophyll biosynthetic process1.05E-04
26GO:0018298: protein-chromophore linkage1.17E-04
27GO:0009853: photorespiration1.78E-04
28GO:0006458: 'de novo' protein folding2.07E-04
29GO:0010196: nonphotochemical quenching2.70E-04
30GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.24E-04
31GO:0009443: pyridoxal 5'-phosphate salvage3.24E-04
32GO:0006438: valyl-tRNA aminoacylation3.24E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.24E-04
34GO:0010480: microsporocyte differentiation3.24E-04
35GO:1904964: positive regulation of phytol biosynthetic process3.24E-04
36GO:0006551: leucine metabolic process3.24E-04
37GO:0033481: galacturonate biosynthetic process3.24E-04
38GO:0071482: cellular response to light stimulus4.17E-04
39GO:0009657: plastid organization4.17E-04
40GO:0009409: response to cold4.19E-04
41GO:0030388: fructose 1,6-bisphosphate metabolic process7.07E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process7.07E-04
43GO:0080183: response to photooxidative stress7.07E-04
44GO:0006352: DNA-templated transcription, initiation7.96E-04
45GO:0006415: translational termination7.96E-04
46GO:0018119: peptidyl-cysteine S-nitrosylation7.96E-04
47GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.14E-03
48GO:0090506: axillary shoot meristem initiation1.15E-03
49GO:0006000: fructose metabolic process1.15E-03
50GO:0006518: peptide metabolic process1.15E-03
51GO:0006696: ergosterol biosynthetic process1.15E-03
52GO:2001295: malonyl-CoA biosynthetic process1.15E-03
53GO:0010207: photosystem II assembly1.16E-03
54GO:0010020: chloroplast fission1.16E-03
55GO:0090351: seedling development1.29E-03
56GO:0019344: cysteine biosynthetic process1.59E-03
57GO:0051085: chaperone mediated protein folding requiring cofactor1.65E-03
58GO:0033014: tetrapyrrole biosynthetic process1.65E-03
59GO:0016556: mRNA modification1.65E-03
60GO:0043572: plastid fission1.65E-03
61GO:2001141: regulation of RNA biosynthetic process1.65E-03
62GO:0009768: photosynthesis, light harvesting in photosystem I1.76E-03
63GO:0009744: response to sucrose1.87E-03
64GO:0006730: one-carbon metabolic process2.11E-03
65GO:0007005: mitochondrion organization2.11E-03
66GO:0080092: regulation of pollen tube growth2.11E-03
67GO:0019676: ammonia assimilation cycle2.21E-03
68GO:0015976: carbon utilization2.21E-03
69GO:0009765: photosynthesis, light harvesting2.21E-03
70GO:0045727: positive regulation of translation2.21E-03
71GO:2000122: negative regulation of stomatal complex development2.21E-03
72GO:0071483: cellular response to blue light2.21E-03
73GO:0009902: chloroplast relocation2.21E-03
74GO:0010037: response to carbon dioxide2.21E-03
75GO:0006542: glutamine biosynthetic process2.21E-03
76GO:0009107: lipoate biosynthetic process2.82E-03
77GO:0016120: carotene biosynthetic process2.82E-03
78GO:0006544: glycine metabolic process2.82E-03
79GO:0006656: phosphatidylcholine biosynthetic process2.82E-03
80GO:0010236: plastoquinone biosynthetic process2.82E-03
81GO:0006461: protein complex assembly2.82E-03
82GO:0042549: photosystem II stabilization3.49E-03
83GO:0070814: hydrogen sulfide biosynthetic process3.49E-03
84GO:0010190: cytochrome b6f complex assembly3.49E-03
85GO:0032973: amino acid export3.49E-03
86GO:0006563: L-serine metabolic process3.49E-03
87GO:0007264: small GTPase mediated signal transduction4.16E-03
88GO:0009955: adaxial/abaxial pattern specification4.20E-03
89GO:0010067: procambium histogenesis4.20E-03
90GO:0009082: branched-chain amino acid biosynthetic process4.20E-03
91GO:0017148: negative regulation of translation4.20E-03
92GO:1901259: chloroplast rRNA processing4.20E-03
93GO:0009099: valine biosynthetic process4.20E-03
94GO:0009854: oxidative photosynthetic carbon pathway4.20E-03
95GO:0010555: response to mannitol4.20E-03
96GO:0043090: amino acid import4.95E-03
97GO:0048437: floral organ development4.95E-03
98GO:0009645: response to low light intensity stimulus4.95E-03
99GO:0050829: defense response to Gram-negative bacterium4.95E-03
100GO:0010027: thylakoid membrane organization5.63E-03
101GO:0052543: callose deposition in cell wall5.76E-03
102GO:0016559: peroxisome fission5.76E-03
103GO:0048564: photosystem I assembly5.76E-03
104GO:0008610: lipid biosynthetic process5.76E-03
105GO:0009642: response to light intensity5.76E-03
106GO:0042742: defense response to bacterium6.51E-03
107GO:0006002: fructose 6-phosphate metabolic process6.60E-03
108GO:0009097: isoleucine biosynthetic process6.60E-03
109GO:0017004: cytochrome complex assembly6.60E-03
110GO:0030244: cellulose biosynthetic process7.35E-03
111GO:0010206: photosystem II repair7.48E-03
112GO:0080144: amino acid homeostasis7.48E-03
113GO:0006783: heme biosynthetic process7.48E-03
114GO:0000902: cell morphogenesis7.48E-03
115GO:0006633: fatty acid biosynthetic process7.61E-03
116GO:0009407: toxin catabolic process8.11E-03
117GO:0006779: porphyrin-containing compound biosynthetic process8.41E-03
118GO:0035999: tetrahydrofolate interconversion8.41E-03
119GO:1900865: chloroplast RNA modification8.41E-03
120GO:0007623: circadian rhythm8.59E-03
121GO:0010192: mucilage biosynthetic process9.37E-03
122GO:0009970: cellular response to sulfate starvation9.37E-03
123GO:0009870: defense response signaling pathway, resistance gene-dependent9.37E-03
124GO:0006535: cysteine biosynthetic process from serine9.37E-03
125GO:0000103: sulfate assimilation9.37E-03
126GO:0019684: photosynthesis, light reaction1.04E-02
127GO:0000272: polysaccharide catabolic process1.04E-02
128GO:0048229: gametophyte development1.04E-02
129GO:0045037: protein import into chloroplast stroma1.14E-02
130GO:0010075: regulation of meristem growth1.25E-02
131GO:0009725: response to hormone1.25E-02
132GO:0006094: gluconeogenesis1.25E-02
133GO:0005986: sucrose biosynthetic process1.25E-02
134GO:0006006: glucose metabolic process1.25E-02
135GO:0009934: regulation of meristem structural organization1.36E-02
136GO:0009636: response to toxic substance1.36E-02
137GO:0010223: secondary shoot formation1.36E-02
138GO:0009225: nucleotide-sugar metabolic process1.48E-02
139GO:0007031: peroxisome organization1.48E-02
140GO:0006636: unsaturated fatty acid biosynthetic process1.60E-02
141GO:0009833: plant-type primary cell wall biogenesis1.60E-02
142GO:0006418: tRNA aminoacylation for protein translation1.84E-02
143GO:0007017: microtubule-based process1.84E-02
144GO:0006096: glycolytic process1.93E-02
145GO:0080167: response to karrikin1.97E-02
146GO:0009416: response to light stimulus2.01E-02
147GO:0010082: regulation of root meristem growth2.23E-02
148GO:0001944: vasculature development2.23E-02
149GO:0010089: xylem development2.37E-02
150GO:0009742: brassinosteroid mediated signaling pathway2.46E-02
151GO:0048653: anther development2.65E-02
152GO:0042631: cellular response to water deprivation2.65E-02
153GO:0000413: protein peptidyl-prolyl isomerization2.65E-02
154GO:0010087: phloem or xylem histogenesis2.65E-02
155GO:0055085: transmembrane transport2.86E-02
156GO:0006457: protein folding2.95E-02
157GO:0015986: ATP synthesis coupled proton transport2.95E-02
158GO:0006814: sodium ion transport2.95E-02
159GO:0009791: post-embryonic development3.10E-02
160GO:0019252: starch biosynthetic process3.10E-02
161GO:0080156: mitochondrial mRNA modification3.25E-02
162GO:0010583: response to cyclopentenone3.41E-02
163GO:0010090: trichome morphogenesis3.57E-02
164GO:0040008: regulation of growth3.83E-02
165GO:0010286: heat acclimation3.89E-02
166GO:0071805: potassium ion transmembrane transport3.89E-02
167GO:0016126: sterol biosynthetic process4.23E-02
168GO:0009607: response to biotic stimulus4.40E-02
169GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.40E-02
170GO:0009627: systemic acquired resistance4.57E-02
171GO:0042128: nitrate assimilation4.57E-02
RankGO TermAdjusted P value
1GO:0051738: xanthophyll binding0.00E+00
2GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
3GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
10GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
14GO:0004326: tetrahydrofolylpolyglutamate synthase activity4.77E-06
15GO:0051082: unfolded protein binding1.06E-05
16GO:0004148: dihydrolipoyl dehydrogenase activity1.69E-05
17GO:0004375: glycine dehydrogenase (decarboxylating) activity3.75E-05
18GO:0016149: translation release factor activity, codon specific3.75E-05
19GO:0044183: protein binding involved in protein folding4.25E-05
20GO:0031072: heat shock protein binding6.51E-05
21GO:0001053: plastid sigma factor activity6.70E-05
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor6.70E-05
23GO:0016987: sigma factor activity6.70E-05
24GO:0016168: chlorophyll binding7.92E-05
25GO:0005528: FK506 binding1.30E-04
26GO:0004222: metalloendopeptidase activity1.39E-04
27GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.07E-04
28GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.07E-04
29GO:0009496: plastoquinol--plastocyanin reductase activity3.24E-04
30GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.24E-04
31GO:0003867: 4-aminobutyrate transaminase activity3.24E-04
32GO:0003984: acetolactate synthase activity3.24E-04
33GO:0004325: ferrochelatase activity3.24E-04
34GO:0051996: squalene synthase activity3.24E-04
35GO:0010313: phytochrome binding3.24E-04
36GO:0004832: valine-tRNA ligase activity3.24E-04
37GO:0004033: aldo-keto reductase (NADP) activity3.40E-04
38GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.51E-04
39GO:0003747: translation release factor activity5.01E-04
40GO:0004618: phosphoglycerate kinase activity7.07E-04
41GO:0010297: heteropolysaccharide binding7.07E-04
42GO:0016415: octanoyltransferase activity7.07E-04
43GO:0004047: aminomethyltransferase activity7.07E-04
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.07E-04
45GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.07E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.07E-04
47GO:0000234: phosphoethanolamine N-methyltransferase activity7.07E-04
48GO:0008967: phosphoglycolate phosphatase activity7.07E-04
49GO:0050017: L-3-cyanoalanine synthase activity7.07E-04
50GO:0010291: carotene beta-ring hydroxylase activity7.07E-04
51GO:0017118: lipoyltransferase activity7.07E-04
52GO:0042389: omega-3 fatty acid desaturase activity7.07E-04
53GO:0005089: Rho guanyl-nucleotide exchange factor activity7.96E-04
54GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.15E-03
55GO:0070330: aromatase activity1.15E-03
56GO:0003913: DNA photolyase activity1.15E-03
57GO:0004075: biotin carboxylase activity1.15E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.15E-03
59GO:0004781: sulfate adenylyltransferase (ATP) activity1.15E-03
60GO:0070402: NADPH binding1.15E-03
61GO:0031409: pigment binding1.44E-03
62GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.65E-03
63GO:0008508: bile acid:sodium symporter activity1.65E-03
64GO:0001872: (1->3)-beta-D-glucan binding1.65E-03
65GO:0048027: mRNA 5'-UTR binding1.65E-03
66GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.65E-03
67GO:0015079: potassium ion transmembrane transporter activity1.76E-03
68GO:0033612: receptor serine/threonine kinase binding1.93E-03
69GO:0005515: protein binding2.05E-03
70GO:0051537: 2 iron, 2 sulfur cluster binding2.06E-03
71GO:0003924: GTPase activity2.13E-03
72GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.21E-03
73GO:0050378: UDP-glucuronate 4-epimerase activity2.21E-03
74GO:0043495: protein anchor2.21E-03
75GO:0022891: substrate-specific transmembrane transporter activity2.30E-03
76GO:0003989: acetyl-CoA carboxylase activity2.82E-03
77GO:0008374: O-acyltransferase activity2.82E-03
78GO:0004372: glycine hydroxymethyltransferase activity2.82E-03
79GO:0016773: phosphotransferase activity, alcohol group as acceptor2.82E-03
80GO:0018685: alkane 1-monooxygenase activity2.82E-03
81GO:0004356: glutamate-ammonia ligase activity2.82E-03
82GO:0080030: methyl indole-3-acetate esterase activity3.49E-03
83GO:0042578: phosphoric ester hydrolase activity3.49E-03
84GO:0048038: quinone binding3.89E-03
85GO:0004124: cysteine synthase activity4.20E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.20E-03
87GO:0016759: cellulose synthase activity4.72E-03
88GO:0009881: photoreceptor activity4.95E-03
89GO:0019899: enzyme binding4.95E-03
90GO:0043295: glutathione binding4.95E-03
91GO:0008237: metallopeptidase activity5.01E-03
92GO:0016597: amino acid binding5.32E-03
93GO:0005509: calcium ion binding5.56E-03
94GO:0019843: rRNA binding5.69E-03
95GO:0008135: translation factor activity, RNA binding6.60E-03
96GO:0015078: hydrogen ion transmembrane transporter activity6.60E-03
97GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.60E-03
98GO:0003746: translation elongation factor activity9.33E-03
99GO:0015386: potassium:proton antiporter activity1.04E-02
100GO:0004364: glutathione transferase activity1.16E-02
101GO:0042802: identical protein binding1.17E-02
102GO:0004565: beta-galactosidase activity1.25E-02
103GO:0008081: phosphoric diester hydrolase activity1.25E-02
104GO:0004089: carbonate dehydratase activity1.25E-02
105GO:0005524: ATP binding1.34E-02
106GO:0005198: structural molecule activity1.36E-02
107GO:0008266: poly(U) RNA binding1.36E-02
108GO:0005525: GTP binding1.38E-02
109GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.63E-02
110GO:0043424: protein histidine kinase binding1.84E-02
111GO:0004176: ATP-dependent peptidase activity1.97E-02
112GO:0016760: cellulose synthase (UDP-forming) activity2.23E-02
113GO:0003824: catalytic activity2.31E-02
114GO:0003756: protein disulfide isomerase activity2.37E-02
115GO:0004812: aminoacyl-tRNA ligase activity2.51E-02
116GO:0005102: receptor binding2.51E-02
117GO:0050662: coenzyme binding2.95E-02
118GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.99E-02
119GO:0004872: receptor activity3.10E-02
120GO:0030170: pyridoxal phosphate binding3.23E-02
121GO:0004518: nuclease activity3.41E-02
122GO:0000156: phosphorelay response regulator activity3.57E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.57E-02
124GO:0008483: transaminase activity3.89E-02
125GO:0016722: oxidoreductase activity, oxidizing metal ions3.89E-02
126GO:0005200: structural constituent of cytoskeleton3.89E-02
127GO:0009931: calcium-dependent protein serine/threonine kinase activity4.57E-02
128GO:0030247: polysaccharide binding4.75E-02
129GO:0004683: calmodulin-dependent protein kinase activity4.75E-02
130GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.92E-02
131GO:0008236: serine-type peptidase activity4.92E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0009507: chloroplast1.48E-54
5GO:0009535: chloroplast thylakoid membrane1.16E-37
6GO:0009941: chloroplast envelope7.23E-28
7GO:0009570: chloroplast stroma3.22E-23
8GO:0009579: thylakoid2.58E-18
9GO:0009534: chloroplast thylakoid3.17E-12
10GO:0009543: chloroplast thylakoid lumen7.30E-12
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.93E-11
12GO:0031977: thylakoid lumen4.81E-08
13GO:0010319: stromule9.23E-08
14GO:0009654: photosystem II oxygen evolving complex1.47E-07
15GO:0030095: chloroplast photosystem II2.38E-06
16GO:0031969: chloroplast membrane3.81E-06
17GO:0048046: apoplast5.08E-06
18GO:0010287: plastoglobule1.72E-05
19GO:0009523: photosystem II3.03E-05
20GO:0019898: extrinsic component of membrane3.03E-05
21GO:0005960: glycine cleavage complex3.75E-05
22GO:0042651: thylakoid membrane1.50E-04
23GO:0009782: photosystem I antenna complex3.24E-04
24GO:0000427: plastid-encoded plastid RNA polymerase complex7.07E-04
25GO:0042170: plastid membrane7.07E-04
26GO:0009706: chloroplast inner membrane7.59E-04
27GO:0016020: membrane9.48E-04
28GO:0030076: light-harvesting complex1.29E-03
29GO:0022626: cytosolic ribosome1.48E-03
30GO:0005759: mitochondrial matrix1.50E-03
31GO:0009517: PSII associated light-harvesting complex II2.21E-03
32GO:0055035: plastid thylakoid membrane2.82E-03
33GO:0009512: cytochrome b6f complex2.82E-03
34GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.49E-03
35GO:0009533: chloroplast stromal thylakoid4.95E-03
36GO:0005779: integral component of peroxisomal membrane6.60E-03
37GO:0009539: photosystem II reaction center6.60E-03
38GO:0045298: tubulin complex7.48E-03
39GO:0005763: mitochondrial small ribosomal subunit7.48E-03
40GO:0016324: apical plasma membrane9.37E-03
41GO:0009536: plastid9.70E-03
42GO:0000311: plastid large ribosomal subunit1.14E-02
43GO:0009508: plastid chromosome1.25E-02
44GO:0016021: integral component of membrane1.44E-02
45GO:0030176: integral component of endoplasmic reticulum membrane1.48E-02
46GO:0005875: microtubule associated complex1.60E-02
47GO:0009532: plastid stroma1.97E-02
48GO:0009522: photosystem I2.95E-02
49GO:0005623: cell2.99E-02
50GO:0032580: Golgi cisterna membrane3.73E-02
51GO:0009295: nucleoid3.89E-02
52GO:0005778: peroxisomal membrane3.89E-02
53GO:0005615: extracellular space4.48E-02
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Gene type



Gene DE type