co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
3	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
4	GO:0010394: homogalacturonan metabolic process	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0010027: thylakoid membrane organization	2.23E-09
7	GO:0015979: photosynthesis	3.11E-07
8	GO:0009773: photosynthetic electron transport in photosystem I	6.88E-07
9	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.78E-06
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.96E-06
11	GO:0032544: plastid translation	1.09E-05
12	GO:0090391: granum assembly	1.41E-05
13	GO:0071555: cell wall organization	2.20E-05
14	GO:0006869: lipid transport	5.06E-05
15	GO:0045038: protein import into chloroplast thylakoid membrane	8.98E-05
16	GO:0018298: protein-chromophore linkage	9.04E-05
17	GO:0010196: nonphotochemical quenching	2.33E-04
18	GO:0042335: cuticle development	2.55E-04
19	GO:0033481: galacturonate biosynthetic process	2.94E-04
20	GO:0043686: co-translational protein modification	2.94E-04
21	GO:0045488: pectin metabolic process	2.94E-04
22	GO:1902458: positive regulation of stomatal opening	2.94E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	2.94E-04
24	GO:0060627: regulation of vesicle-mediated transport	2.94E-04
25	GO:0008610: lipid biosynthetic process	2.94E-04
26	GO:0042254: ribosome biogenesis	5.92E-04
27	GO:0006729: tetrahydrobiopterin biosynthetic process	6.45E-04
28	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.45E-04
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.45E-04
30	GO:0010289: homogalacturonan biosynthetic process	6.45E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.45E-04
32	GO:0043255: regulation of carbohydrate biosynthetic process	6.45E-04
33	GO:0015786: UDP-glucose transport	6.45E-04
34	GO:0015995: chlorophyll biosynthetic process	7.43E-04
35	GO:0045037: protein import into chloroplast stroma	7.93E-04
36	GO:0030244: cellulose biosynthetic process	8.44E-04
37	GO:0010207: photosystem II assembly	1.01E-03
38	GO:0009735: response to cytokinin	1.02E-03
39	GO:0009062: fatty acid catabolic process	1.04E-03
40	GO:0015675: nickel cation transport	1.04E-03
41	GO:0051604: protein maturation	1.04E-03
42	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.04E-03
43	GO:0015783: GDP-fucose transport	1.04E-03
44	GO:0006000: fructose metabolic process	1.04E-03
45	GO:0009825: multidimensional cell growth	1.13E-03
46	GO:0006633: fatty acid biosynthetic process	1.21E-03
47	GO:0009833: plant-type primary cell wall biogenesis	1.25E-03
48	GO:0006833: water transport	1.25E-03
49	GO:0010025: wax biosynthetic process	1.25E-03
50	GO:0031048: chromatin silencing by small RNA	1.50E-03
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.50E-03
52	GO:0007231: osmosensory signaling pathway	1.50E-03
53	GO:0051639: actin filament network formation	1.50E-03
54	GO:0072334: UDP-galactose transmembrane transport	1.50E-03
55	GO:0080170: hydrogen peroxide transmembrane transport	1.50E-03
56	GO:0019048: modulation by virus of host morphology or physiology	1.50E-03
57	GO:1901332: negative regulation of lateral root development	1.50E-03
58	GO:0009768: photosynthesis, light harvesting in photosystem I	1.53E-03
59	GO:0007017: microtubule-based process	1.53E-03
60	GO:0016998: cell wall macromolecule catabolic process	1.68E-03
61	GO:0030245: cellulose catabolic process	1.83E-03
62	GO:0055085: transmembrane transport	1.95E-03
63	GO:0051567: histone H3-K9 methylation	2.01E-03
64	GO:0051764: actin crosslink formation	2.01E-03
65	GO:0009765: photosynthesis, light harvesting	2.01E-03
66	GO:0006183: GTP biosynthetic process	2.01E-03
67	GO:0033500: carbohydrate homeostasis	2.01E-03
68	GO:0031122: cytoplasmic microtubule organization	2.01E-03
69	GO:0042538: hyperosmotic salinity response	2.08E-03
70	GO:0034220: ion transmembrane transport	2.54E-03
71	GO:0010236: plastoquinone biosynthetic process	2.56E-03
72	GO:0031365: N-terminal protein amino acid modification	2.56E-03
73	GO:0006461: protein complex assembly	2.56E-03
74	GO:0045489: pectin biosynthetic process	2.74E-03
75	GO:0006096: glycolytic process	2.81E-03
76	GO:0009409: response to cold	2.92E-03
77	GO:0016458: gene silencing	3.16E-03
78	GO:0006014: D-ribose metabolic process	3.16E-03
79	GO:0042549: photosystem II stabilization	3.16E-03
80	GO:0009913: epidermal cell differentiation	3.16E-03
81	GO:0010190: cytochrome b6f complex assembly	3.16E-03
82	GO:0010337: regulation of salicylic acid metabolic process	3.16E-03
83	GO:0006810: transport	3.48E-03
84	GO:0006694: steroid biosynthetic process	3.81E-03
85	GO:1901259: chloroplast rRNA processing	3.81E-03
86	GO:0010189: vitamin E biosynthetic process	3.81E-03
87	GO:0010019: chloroplast-nucleus signaling pathway	3.81E-03
88	GO:0009955: adaxial/abaxial pattern specification	3.81E-03
89	GO:0009645: response to low light intensity stimulus	4.49E-03
90	GO:0006400: tRNA modification	4.49E-03
91	GO:0050829: defense response to Gram-negative bacterium	4.49E-03
92	GO:0009395: phospholipid catabolic process	4.49E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.49E-03
94	GO:0009416: response to light stimulus	4.53E-03
95	GO:0006605: protein targeting	5.21E-03
96	GO:0006875: cellular metal ion homeostasis	5.21E-03
97	GO:2000070: regulation of response to water deprivation	5.21E-03
98	GO:0016559: peroxisome fission	5.21E-03
99	GO:0007155: cell adhesion	5.21E-03
100	GO:0009657: plastid organization	5.98E-03
101	GO:0017004: cytochrome complex assembly	5.98E-03
102	GO:0009808: lignin metabolic process	5.98E-03
103	GO:0006002: fructose 6-phosphate metabolic process	5.98E-03
104	GO:0015996: chlorophyll catabolic process	5.98E-03
105	GO:0009827: plant-type cell wall modification	5.98E-03
106	GO:0007186: G-protein coupled receptor signaling pathway	5.98E-03
107	GO:0009834: plant-type secondary cell wall biogenesis	7.03E-03
108	GO:0042761: very long-chain fatty acid biosynthetic process	7.60E-03
109	GO:0016051: carbohydrate biosynthetic process	8.08E-03
110	GO:0019538: protein metabolic process	8.48E-03
111	GO:0006032: chitin catabolic process	8.48E-03
112	GO:0030422: production of siRNA involved in RNA interference	8.48E-03
113	GO:0006412: translation	9.24E-03
114	GO:0006415: translational termination	9.38E-03
115	GO:0018119: peptidyl-cysteine S-nitrosylation	9.38E-03
116	GO:0000038: very long-chain fatty acid metabolic process	9.38E-03
117	GO:0006816: calcium ion transport	9.38E-03
118	GO:0009073: aromatic amino acid family biosynthetic process	9.38E-03
119	GO:0010102: lateral root morphogenesis	1.13E-02
120	GO:0009718: anthocyanin-containing compound biosynthetic process	1.13E-02
121	GO:0006094: gluconeogenesis	1.13E-02
122	GO:0005986: sucrose biosynthetic process	1.13E-02
123	GO:0019253: reductive pentose-phosphate cycle	1.23E-02
124	GO:0010143: cutin biosynthetic process	1.23E-02
125	GO:0010020: chloroplast fission	1.23E-02
126	GO:0009658: chloroplast organization	1.25E-02
127	GO:0005985: sucrose metabolic process	1.33E-02
128	GO:0070588: calcium ion transmembrane transport	1.33E-02
129	GO:0010053: root epidermal cell differentiation	1.33E-02
130	GO:0009969: xyloglucan biosynthetic process	1.33E-02
131	GO:0009225: nucleotide-sugar metabolic process	1.33E-02
132	GO:0010167: response to nitrate	1.33E-02
133	GO:0009809: lignin biosynthetic process	1.41E-02
134	GO:0019762: glucosinolate catabolic process	1.44E-02
135	GO:0051017: actin filament bundle assembly	1.55E-02
136	GO:0000027: ribosomal large subunit assembly	1.55E-02
137	GO:0080167: response to karrikin	1.64E-02
138	GO:0006418: tRNA aminoacylation for protein translation	1.66E-02
139	GO:0009695: jasmonic acid biosynthetic process	1.66E-02
140	GO:0055114: oxidation-reduction process	1.75E-02
141	GO:0031408: oxylipin biosynthetic process	1.78E-02
142	GO:0006306: DNA methylation	1.78E-02
143	GO:0009624: response to nematode	2.01E-02
144	GO:0009294: DNA mediated transformation	2.02E-02
145	GO:0040007: growth	2.02E-02
146	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.02E-02
147	GO:0045454: cell redox homeostasis	2.06E-02
148	GO:0019722: calcium-mediated signaling	2.14E-02
149	GO:0009306: protein secretion	2.14E-02
150	GO:0080022: primary root development	2.40E-02
151	GO:0000413: protein peptidyl-prolyl isomerization	2.40E-02
152	GO:0010182: sugar mediated signaling pathway	2.53E-02
153	GO:0048868: pollen tube development	2.53E-02
154	GO:0006342: chromatin silencing	2.53E-02
155	GO:0019252: starch biosynthetic process	2.80E-02
156	GO:0008654: phospholipid biosynthetic process	2.80E-02
157	GO:0042744: hydrogen peroxide catabolic process	2.87E-02
158	GO:0006635: fatty acid beta-oxidation	2.94E-02
159	GO:0016132: brassinosteroid biosynthetic process	2.94E-02
160	GO:0071554: cell wall organization or biogenesis	2.94E-02
161	GO:0000302: response to reactive oxygen species	2.94E-02
162	GO:0010583: response to cyclopentenone	3.08E-02
163	GO:0019761: glucosinolate biosynthetic process	3.08E-02
164	GO:0005975: carbohydrate metabolic process	3.12E-02
165	GO:0009828: plant-type cell wall loosening	3.37E-02
166	GO:0007267: cell-cell signaling	3.51E-02
167	GO:0071805: potassium ion transmembrane transport	3.51E-02
168	GO:0051607: defense response to virus	3.66E-02
169	GO:0009816: defense response to bacterium, incompatible interaction	3.97E-02
170	GO:0042128: nitrate assimilation	4.13E-02
171	GO:0010411: xyloglucan metabolic process	4.29E-02
172	GO:0048481: plant ovule development	4.61E-02
173	GO:0009817: defense response to fungus, incompatible interaction	4.61E-02
174	GO:0009832: plant-type cell wall biogenesis	4.77E-02
175	GO:0010311: lateral root formation	4.77E-02
176	GO:0010218: response to far red light	4.94E-02
177	GO:0009407: toxin catabolic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0005048: signal sequence binding	0.00E+00
5	GO:0050614: delta24-sterol reductase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
8	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
9	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	4.05E-07
10	GO:0019843: rRNA binding	9.18E-07
11	GO:0051920: peroxiredoxin activity	3.09E-06
12	GO:0016209: antioxidant activity	7.53E-06
13	GO:0043495: protein anchor	5.68E-05
14	GO:0016168: chlorophyll binding	6.09E-05
15	GO:0008289: lipid binding	1.70E-04
16	GO:0019899: enzyme binding	2.33E-04
17	GO:0042586: peptide deformylase activity	2.94E-04
18	GO:0015088: copper uptake transmembrane transporter activity	2.94E-04
19	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.94E-04
20	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.94E-04
21	GO:0008809: carnitine racemase activity	2.94E-04
22	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.94E-04
23	GO:0008568: microtubule-severing ATPase activity	2.94E-04
24	GO:0004321: fatty-acyl-CoA synthase activity	2.94E-04
25	GO:0003924: GTPase activity	3.85E-04
26	GO:0004601: peroxidase activity	5.72E-04
27	GO:0015099: nickel cation transmembrane transporter activity	6.45E-04
28	GO:0008967: phosphoglycolate phosphatase activity	6.45E-04
29	GO:0003938: IMP dehydrogenase activity	6.45E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.45E-04
31	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.45E-04
32	GO:0008805: carbon-monoxide oxygenase activity	6.45E-04
33	GO:0004802: transketolase activity	6.45E-04
34	GO:0008378: galactosyltransferase activity	7.93E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.04E-03
36	GO:0005457: GDP-fucose transmembrane transporter activity	1.04E-03
37	GO:0070330: aromatase activity	1.04E-03
38	GO:0002161: aminoacyl-tRNA editing activity	1.04E-03
39	GO:0031409: pigment binding	1.25E-03
40	GO:0005460: UDP-glucose transmembrane transporter activity	1.50E-03
41	GO:0035197: siRNA binding	1.50E-03
42	GO:0016851: magnesium chelatase activity	1.50E-03
43	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.50E-03
44	GO:0001872: (1->3)-beta-D-glucan binding	1.50E-03
45	GO:0016149: translation release factor activity, codon specific	1.50E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	2.00E-03
47	GO:0008810: cellulase activity	2.00E-03
48	GO:0005319: lipid transporter activity	2.01E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.01E-03
50	GO:0080032: methyl jasmonate esterase activity	2.01E-03
51	GO:0050378: UDP-glucuronate 4-epimerase activity	2.01E-03
52	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.11E-03
53	GO:0003735: structural constituent of ribosome	2.33E-03
54	GO:0018685: alkane 1-monooxygenase activity	2.56E-03
55	GO:0005459: UDP-galactose transmembrane transporter activity	2.56E-03
56	GO:0016788: hydrolase activity, acting on ester bonds	2.79E-03
57	GO:0016688: L-ascorbate peroxidase activity	3.16E-03
58	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.16E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	3.16E-03
60	GO:0004130: cytochrome-c peroxidase activity	3.16E-03
61	GO:0005525: GTP binding	3.26E-03
62	GO:0004747: ribokinase activity	3.81E-03
63	GO:0051753: mannan synthase activity	3.81E-03
64	GO:0016759: cellulose synthase activity	4.09E-03
65	GO:0005200: structural constituent of cytoskeleton	4.35E-03
66	GO:0052689: carboxylic ester hydrolase activity	4.39E-03
67	GO:0004620: phospholipase activity	4.49E-03
68	GO:0016413: O-acetyltransferase activity	4.61E-03
69	GO:0015250: water channel activity	4.88E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	5.21E-03
71	GO:0008865: fructokinase activity	5.21E-03
72	GO:0008312: 7S RNA binding	5.21E-03
73	GO:0052747: sinapyl alcohol dehydrogenase activity	5.21E-03
74	GO:0030247: polysaccharide binding	5.75E-03
75	GO:0003747: translation release factor activity	6.77E-03
76	GO:0016207: 4-coumarate-CoA ligase activity	6.77E-03
77	GO:0005381: iron ion transmembrane transporter activity	7.60E-03
78	GO:0030234: enzyme regulator activity	8.48E-03
79	GO:0004568: chitinase activity	8.48E-03
80	GO:0047372: acylglycerol lipase activity	9.38E-03
81	GO:0042802: identical protein binding	9.71E-03
82	GO:0000049: tRNA binding	1.03E-02
83	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.03E-02
84	GO:0004521: endoribonuclease activity	1.03E-02
85	GO:0008081: phosphoric diester hydrolase activity	1.13E-02
86	GO:0031072: heat shock protein binding	1.13E-02
87	GO:0005262: calcium channel activity	1.13E-02
88	GO:0004565: beta-galactosidase activity	1.13E-02
89	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.22E-02
90	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.23E-02
91	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.44E-02
92	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.44E-02
93	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.44E-02
94	GO:0004857: enzyme inhibitor activity	1.55E-02
95	GO:0043424: protein histidine kinase binding	1.66E-02
96	GO:0015079: potassium ion transmembrane transporter activity	1.66E-02
97	GO:0003824: catalytic activity	1.81E-02
98	GO:0016874: ligase activity	1.89E-02
99	GO:0030599: pectinesterase activity	1.89E-02
100	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.90E-02
101	GO:0016760: cellulose synthase (UDP-forming) activity	2.02E-02
102	GO:0016746: transferase activity, transferring acyl groups	2.07E-02
103	GO:0004871: signal transducer activity	2.18E-02
104	GO:0004812: aminoacyl-tRNA ligase activity	2.27E-02
105	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.94E-02
106	GO:0048038: quinone binding	2.94E-02
107	GO:0051015: actin filament binding	3.22E-02
108	GO:0016791: phosphatase activity	3.37E-02
109	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.51E-02
110	GO:0051213: dioxygenase activity	3.82E-02
111	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.29E-02
112	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.41E-02
113	GO:0008236: serine-type peptidase activity	4.44E-02
114	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.44E-02
115	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0009507: chloroplast	2.41E-23
4	GO:0009535: chloroplast thylakoid membrane	1.07E-18
5	GO:0009570: chloroplast stroma	4.14E-17
6	GO:0009941: chloroplast envelope	5.61E-15
7	GO:0009534: chloroplast thylakoid	6.97E-14
8	GO:0009579: thylakoid	2.33E-09
9	GO:0048046: apoplast	3.82E-07
10	GO:0046658: anchored component of plasma membrane	5.42E-07
11	GO:0005618: cell wall	3.58E-06
12	GO:0016021: integral component of membrane	4.66E-06
13	GO:0009533: chloroplast stromal thylakoid	4.97E-06
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.51E-05
15	GO:0016020: membrane	9.40E-05
16	GO:0005794: Golgi apparatus	9.93E-05
17	GO:0042651: thylakoid membrane	1.22E-04
18	GO:0009543: chloroplast thylakoid lumen	1.34E-04
19	GO:0031977: thylakoid lumen	1.87E-04
20	GO:0009505: plant-type cell wall	2.23E-04
21	GO:0031225: anchored component of membrane	2.26E-04
22	GO:0005802: trans-Golgi network	2.43E-04
23	GO:0009782: photosystem I antenna complex	2.94E-04
24	GO:0005768: endosome	3.41E-04
25	GO:0009523: photosystem II	3.43E-04
26	GO:0045298: tubulin complex	4.36E-04
27	GO:0005840: ribosome	5.01E-04
28	GO:0010319: stromule	5.21E-04
29	GO:0080085: signal recognition particle, chloroplast targeting	6.45E-04
30	GO:0005886: plasma membrane	9.26E-04
31	GO:0000139: Golgi membrane	9.31E-04
32	GO:0009528: plastid inner membrane	1.04E-03
33	GO:0010007: magnesium chelatase complex	1.04E-03
34	GO:0030076: light-harvesting complex	1.13E-03
35	GO:0005719: nuclear euchromatin	1.50E-03
36	GO:0032432: actin filament bundle	1.50E-03
37	GO:0009654: photosystem II oxygen evolving complex	1.53E-03
38	GO:0031897: Tic complex	2.01E-03
39	GO:0009527: plastid outer membrane	2.01E-03
40	GO:0009526: plastid envelope	2.01E-03
41	GO:0009506: plasmodesma	2.14E-03
42	GO:0055035: plastid thylakoid membrane	2.56E-03
43	GO:0009706: chloroplast inner membrane	3.56E-03
44	GO:0010287: plastoglobule	4.43E-03
45	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.98E-03
46	GO:0009539: photosystem II reaction center	5.98E-03
47	GO:0009707: chloroplast outer membrane	6.37E-03
48	GO:0005763: mitochondrial small ribosomal subunit	6.77E-03
49	GO:0015934: large ribosomal subunit	7.37E-03
50	GO:0015030: Cajal body	7.60E-03
51	GO:0005884: actin filament	9.38E-03
52	GO:0005578: proteinaceous extracellular matrix	1.13E-02
53	GO:0005576: extracellular region	1.14E-02
54	GO:0030095: chloroplast photosystem II	1.23E-02
55	GO:0009532: plastid stroma	1.78E-02
56	GO:0015935: small ribosomal subunit	1.78E-02
57	GO:0009536: plastid	2.19E-02
58	GO:0009522: photosystem I	2.66E-02
59	GO:0019898: extrinsic component of membrane	2.80E-02
60	GO:0032580: Golgi cisterna membrane	3.37E-02
61	GO:0030529: intracellular ribonucleoprotein complex	3.82E-02
62	GO:0005887: integral component of plasma membrane	3.91E-02