GO Enrichment Analysis of Co-expressed Genes with
AT5G11480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0010027: thylakoid membrane organization | 4.70E-08 |
| 8 | GO:0090391: granum assembly | 2.01E-06 |
| 9 | GO:0015979: photosynthesis | 4.22E-06 |
| 10 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.28E-05 |
| 11 | GO:1901259: chloroplast rRNA processing | 3.24E-05 |
| 12 | GO:0010206: photosystem II repair | 8.98E-05 |
| 13 | GO:0034337: RNA folding | 1.00E-04 |
| 14 | GO:0043953: protein transport by the Tat complex | 1.00E-04 |
| 15 | GO:0009090: homoserine biosynthetic process | 1.00E-04 |
| 16 | GO:0065002: intracellular protein transmembrane transport | 1.00E-04 |
| 17 | GO:0043686: co-translational protein modification | 1.00E-04 |
| 18 | GO:0010207: photosystem II assembly | 2.31E-04 |
| 19 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.36E-04 |
| 20 | GO:0006568: tryptophan metabolic process | 2.36E-04 |
| 21 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.36E-04 |
| 22 | GO:0018026: peptidyl-lysine monomethylation | 2.36E-04 |
| 23 | GO:1902448: positive regulation of shade avoidance | 3.92E-04 |
| 24 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.92E-04 |
| 25 | GO:0051604: protein maturation | 3.92E-04 |
| 26 | GO:0006760: folic acid-containing compound metabolic process | 3.92E-04 |
| 27 | GO:0009067: aspartate family amino acid biosynthetic process | 5.64E-04 |
| 28 | GO:0010239: chloroplast mRNA processing | 5.64E-04 |
| 29 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.64E-04 |
| 30 | GO:2001141: regulation of RNA biosynthetic process | 5.64E-04 |
| 31 | GO:0006661: phosphatidylinositol biosynthetic process | 7.50E-04 |
| 32 | GO:0006109: regulation of carbohydrate metabolic process | 7.50E-04 |
| 33 | GO:0046656: folic acid biosynthetic process | 7.50E-04 |
| 34 | GO:0010021: amylopectin biosynthetic process | 7.50E-04 |
| 35 | GO:0009567: double fertilization forming a zygote and endosperm | 9.40E-04 |
| 36 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.47E-04 |
| 37 | GO:0031365: N-terminal protein amino acid modification | 9.47E-04 |
| 38 | GO:0000470: maturation of LSU-rRNA | 1.16E-03 |
| 39 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.38E-03 |
| 40 | GO:0017148: negative regulation of translation | 1.38E-03 |
| 41 | GO:0046654: tetrahydrofolate biosynthetic process | 1.38E-03 |
| 42 | GO:0009088: threonine biosynthetic process | 1.38E-03 |
| 43 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.62E-03 |
| 44 | GO:0010196: nonphotochemical quenching | 1.62E-03 |
| 45 | GO:0015693: magnesium ion transport | 1.62E-03 |
| 46 | GO:0009658: chloroplast organization | 1.83E-03 |
| 47 | GO:0009642: response to light intensity | 1.87E-03 |
| 48 | GO:0006353: DNA-templated transcription, termination | 1.87E-03 |
| 49 | GO:0071482: cellular response to light stimulus | 2.14E-03 |
| 50 | GO:0032544: plastid translation | 2.14E-03 |
| 51 | GO:0000373: Group II intron splicing | 2.41E-03 |
| 52 | GO:0009086: methionine biosynthetic process | 2.70E-03 |
| 53 | GO:0006535: cysteine biosynthetic process from serine | 3.00E-03 |
| 54 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.31E-03 |
| 55 | GO:0043085: positive regulation of catalytic activity | 3.31E-03 |
| 56 | GO:1903507: negative regulation of nucleic acid-templated transcription | 3.31E-03 |
| 57 | GO:0006352: DNA-templated transcription, initiation | 3.31E-03 |
| 58 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.63E-03 |
| 59 | GO:0019344: cysteine biosynthetic process | 5.37E-03 |
| 60 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 6.54E-03 |
| 61 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.94E-03 |
| 62 | GO:0071369: cellular response to ethylene stimulus | 6.94E-03 |
| 63 | GO:0009735: response to cytokinin | 7.24E-03 |
| 64 | GO:0009561: megagametogenesis | 7.35E-03 |
| 65 | GO:0009451: RNA modification | 7.79E-03 |
| 66 | GO:0080022: primary root development | 8.21E-03 |
| 67 | GO:0000413: protein peptidyl-prolyl isomerization | 8.21E-03 |
| 68 | GO:0006662: glycerol ether metabolic process | 8.65E-03 |
| 69 | GO:0019252: starch biosynthetic process | 9.56E-03 |
| 70 | GO:0008654: phospholipid biosynthetic process | 9.56E-03 |
| 71 | GO:0030163: protein catabolic process | 1.10E-02 |
| 72 | GO:0009828: plant-type cell wall loosening | 1.15E-02 |
| 73 | GO:0015995: chlorophyll biosynthetic process | 1.46E-02 |
| 74 | GO:0009817: defense response to fungus, incompatible interaction | 1.57E-02 |
| 75 | GO:0009637: response to blue light | 1.86E-02 |
| 76 | GO:0006412: translation | 1.91E-02 |
| 77 | GO:0034599: cellular response to oxidative stress | 1.91E-02 |
| 78 | GO:0010114: response to red light | 2.22E-02 |
| 79 | GO:0006397: mRNA processing | 2.26E-02 |
| 80 | GO:0008152: metabolic process | 2.39E-02 |
| 81 | GO:0031347: regulation of defense response | 2.55E-02 |
| 82 | GO:0009664: plant-type cell wall organization | 2.61E-02 |
| 83 | GO:0006364: rRNA processing | 2.75E-02 |
| 84 | GO:0043086: negative regulation of catalytic activity | 3.09E-02 |
| 85 | GO:0009742: brassinosteroid mediated signaling pathway | 3.68E-02 |
| 86 | GO:0009790: embryo development | 4.62E-02 |
| 87 | GO:0006457: protein folding | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0043023: ribosomal large subunit binding | 4.78E-06 |
| 3 | GO:0019843: rRNA binding | 7.11E-05 |
| 4 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.00E-04 |
| 5 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.00E-04 |
| 6 | GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity | 1.00E-04 |
| 7 | GO:0017169: CDP-alcohol phosphatidyltransferase activity | 1.00E-04 |
| 8 | GO:0042586: peptide deformylase activity | 1.00E-04 |
| 9 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.00E-04 |
| 10 | GO:0005080: protein kinase C binding | 1.00E-04 |
| 11 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.00E-04 |
| 12 | GO:0031072: heat shock protein binding | 2.03E-04 |
| 13 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.36E-04 |
| 14 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.36E-04 |
| 15 | GO:0033201: alpha-1,4-glucan synthase activity | 2.36E-04 |
| 16 | GO:0000774: adenyl-nucleotide exchange factor activity | 2.36E-04 |
| 17 | GO:0004412: homoserine dehydrogenase activity | 2.36E-04 |
| 18 | GO:0004150: dihydroneopterin aldolase activity | 2.36E-04 |
| 19 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.82E-04 |
| 20 | GO:0005528: FK506 binding | 3.24E-04 |
| 21 | GO:0004373: glycogen (starch) synthase activity | 3.92E-04 |
| 22 | GO:0004751: ribose-5-phosphate isomerase activity | 3.92E-04 |
| 23 | GO:0003723: RNA binding | 4.92E-04 |
| 24 | GO:0051082: unfolded protein binding | 5.38E-04 |
| 25 | GO:0004072: aspartate kinase activity | 5.64E-04 |
| 26 | GO:0016851: magnesium chelatase activity | 5.64E-04 |
| 27 | GO:0001053: plastid sigma factor activity | 7.50E-04 |
| 28 | GO:0004045: aminoacyl-tRNA hydrolase activity | 7.50E-04 |
| 29 | GO:0016987: sigma factor activity | 7.50E-04 |
| 30 | GO:0009011: starch synthase activity | 7.50E-04 |
| 31 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 7.50E-04 |
| 32 | GO:0016279: protein-lysine N-methyltransferase activity | 7.50E-04 |
| 33 | GO:0042578: phosphoric ester hydrolase activity | 1.16E-03 |
| 34 | GO:0008236: serine-type peptidase activity | 1.37E-03 |
| 35 | GO:0004124: cysteine synthase activity | 1.38E-03 |
| 36 | GO:0008312: 7S RNA binding | 1.87E-03 |
| 37 | GO:0043022: ribosome binding | 1.87E-03 |
| 38 | GO:0008047: enzyme activator activity | 3.00E-03 |
| 39 | GO:0015095: magnesium ion transmembrane transporter activity | 3.95E-03 |
| 40 | GO:0009982: pseudouridine synthase activity | 3.95E-03 |
| 41 | GO:0004857: enzyme inhibitor activity | 5.37E-03 |
| 42 | GO:0003714: transcription corepressor activity | 5.37E-03 |
| 43 | GO:0051087: chaperone binding | 5.75E-03 |
| 44 | GO:0043424: protein histidine kinase binding | 5.75E-03 |
| 45 | GO:0003756: protein disulfide isomerase activity | 7.35E-03 |
| 46 | GO:0047134: protein-disulfide reductase activity | 7.78E-03 |
| 47 | GO:0004791: thioredoxin-disulfide reductase activity | 9.10E-03 |
| 48 | GO:0010181: FMN binding | 9.10E-03 |
| 49 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.10E-02 |
| 50 | GO:0016597: amino acid binding | 1.25E-02 |
| 51 | GO:0016168: chlorophyll binding | 1.35E-02 |
| 52 | GO:0005525: GTP binding | 1.53E-02 |
| 53 | GO:0030145: manganese ion binding | 1.74E-02 |
| 54 | GO:0005509: calcium ion binding | 1.79E-02 |
| 55 | GO:0003746: translation elongation factor activity | 1.86E-02 |
| 56 | GO:0050661: NADP binding | 2.03E-02 |
| 57 | GO:0043621: protein self-association | 2.35E-02 |
| 58 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.75E-02 |
| 59 | GO:0003729: mRNA binding | 3.26E-02 |
| 60 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.31E-02 |
| 61 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.31E-02 |
| 62 | GO:0015035: protein disulfide oxidoreductase activity | 3.61E-02 |
| 63 | GO:0016746: transferase activity, transferring acyl groups | 3.61E-02 |
| 64 | GO:0008026: ATP-dependent helicase activity | 3.68E-02 |
| 65 | GO:0004252: serine-type endopeptidase activity | 4.46E-02 |
| 66 | GO:0030170: pyridoxal phosphate binding | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 7.15E-48 |
| 3 | GO:0009570: chloroplast stroma | 1.28E-25 |
| 4 | GO:0009534: chloroplast thylakoid | 1.68E-13 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 2.77E-12 |
| 6 | GO:0009941: chloroplast envelope | 3.10E-12 |
| 7 | GO:0009579: thylakoid | 8.88E-11 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.02E-10 |
| 9 | GO:0031977: thylakoid lumen | 3.08E-07 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 1.16E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 3.91E-05 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 4.38E-05 |
| 13 | GO:0031361: integral component of thylakoid membrane | 1.00E-04 |
| 14 | GO:0009515: granal stacked thylakoid | 1.00E-04 |
| 15 | GO:0080085: signal recognition particle, chloroplast targeting | 2.36E-04 |
| 16 | GO:0031969: chloroplast membrane | 3.77E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 3.92E-04 |
| 18 | GO:0009509: chromoplast | 3.92E-04 |
| 19 | GO:0033281: TAT protein transport complex | 3.92E-04 |
| 20 | GO:0009526: plastid envelope | 7.50E-04 |
| 21 | GO:0055035: plastid thylakoid membrane | 9.47E-04 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 1.11E-03 |
| 23 | GO:0009501: amyloplast | 1.87E-03 |
| 24 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.14E-03 |
| 25 | GO:0055028: cortical microtubule | 3.00E-03 |
| 26 | GO:0032040: small-subunit processome | 3.63E-03 |
| 27 | GO:0009508: plastid chromosome | 3.95E-03 |
| 28 | GO:0000312: plastid small ribosomal subunit | 4.30E-03 |
| 29 | GO:0009532: plastid stroma | 6.14E-03 |
| 30 | GO:0009522: photosystem I | 9.10E-03 |
| 31 | GO:0009295: nucleoid | 1.20E-02 |
| 32 | GO:0005840: ribosome | 2.11E-02 |
| 33 | GO:0043231: intracellular membrane-bounded organelle | 2.39E-02 |
| 34 | GO:0009536: plastid | 2.57E-02 |
| 35 | GO:0010287: plastoglobule | 3.99E-02 |
| 36 | GO:0005623: cell | 4.22E-02 |
| 37 | GO:0005759: mitochondrial matrix | 4.87E-02 |