Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0000372: Group I intron splicing0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
13GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
14GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
15GO:0006399: tRNA metabolic process0.00E+00
16GO:0015979: photosynthesis2.38E-17
17GO:0032544: plastid translation1.08E-13
18GO:0006412: translation2.39E-12
19GO:0010027: thylakoid membrane organization6.36E-12
20GO:0015995: chlorophyll biosynthetic process1.93E-08
21GO:0009773: photosynthetic electron transport in photosystem I2.72E-08
22GO:0090391: granum assembly6.23E-08
23GO:0009735: response to cytokinin6.29E-08
24GO:0042254: ribosome biogenesis4.63E-07
25GO:0006655: phosphatidylglycerol biosynthetic process3.73E-06
26GO:0010207: photosystem II assembly4.37E-06
27GO:1902326: positive regulation of chlorophyll biosynthetic process6.85E-06
28GO:0010196: nonphotochemical quenching1.02E-05
29GO:0010206: photosystem II repair3.00E-05
30GO:0009658: chloroplast organization4.21E-05
31GO:0043085: positive regulation of catalytic activity6.53E-05
32GO:0032543: mitochondrial translation1.43E-04
33GO:0010236: plastoquinone biosynthetic process1.43E-04
34GO:0031365: N-terminal protein amino acid modification1.43E-04
35GO:0009772: photosynthetic electron transport in photosystem II3.58E-04
36GO:0034337: RNA folding3.92E-04
37GO:0071588: hydrogen peroxide mediated signaling pathway3.92E-04
38GO:0009090: homoserine biosynthetic process3.92E-04
39GO:0043489: RNA stabilization3.92E-04
40GO:0042371: vitamin K biosynthetic process3.92E-04
41GO:0043686: co-translational protein modification3.92E-04
42GO:0000413: protein peptidyl-prolyl isomerization4.45E-04
43GO:0008610: lipid biosynthetic process4.48E-04
44GO:0071482: cellular response to light stimulus5.48E-04
45GO:0009657: plastid organization5.48E-04
46GO:0045454: cell redox homeostasis5.99E-04
47GO:0006729: tetrahydrobiopterin biosynthetic process8.49E-04
48GO:0006568: tryptophan metabolic process8.49E-04
49GO:0030388: fructose 1,6-bisphosphate metabolic process8.49E-04
50GO:0010289: homogalacturonan biosynthetic process8.49E-04
51GO:0010270: photosystem II oxygen evolving complex assembly8.49E-04
52GO:0010275: NAD(P)H dehydrogenase complex assembly8.49E-04
53GO:0009662: etioplast organization8.49E-04
54GO:0016024: CDP-diacylglycerol biosynthetic process1.19E-03
55GO:0009793: embryo development ending in seed dormancy1.32E-03
56GO:0006006: glucose metabolic process1.34E-03
57GO:1902448: positive regulation of shade avoidance1.38E-03
58GO:0006000: fructose metabolic process1.38E-03
59GO:0006518: peptide metabolic process1.38E-03
60GO:0010581: regulation of starch biosynthetic process1.38E-03
61GO:0051604: protein maturation1.38E-03
62GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.38E-03
63GO:0071492: cellular response to UV-A1.38E-03
64GO:0018298: protein-chromophore linkage1.43E-03
65GO:0006457: protein folding1.44E-03
66GO:0019253: reductive pentose-phosphate cycle1.51E-03
67GO:0009067: aspartate family amino acid biosynthetic process1.99E-03
68GO:0071484: cellular response to light intensity1.99E-03
69GO:0009102: biotin biosynthetic process1.99E-03
70GO:0051085: chaperone mediated protein folding requiring cofactor1.99E-03
71GO:0006241: CTP biosynthetic process1.99E-03
72GO:0009052: pentose-phosphate shunt, non-oxidative branch1.99E-03
73GO:0006424: glutamyl-tRNA aminoacylation1.99E-03
74GO:1901332: negative regulation of lateral root development1.99E-03
75GO:0006165: nucleoside diphosphate phosphorylation1.99E-03
76GO:0006228: UTP biosynthetic process1.99E-03
77GO:0006986: response to unfolded protein1.99E-03
78GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.99E-03
79GO:2001141: regulation of RNA biosynthetic process1.99E-03
80GO:0034599: cellular response to oxidative stress2.04E-03
81GO:0006418: tRNA aminoacylation for protein translation2.31E-03
82GO:0071486: cellular response to high light intensity2.67E-03
83GO:0006661: phosphatidylinositol biosynthetic process2.67E-03
84GO:0009765: photosynthesis, light harvesting2.67E-03
85GO:0006109: regulation of carbohydrate metabolic process2.67E-03
86GO:0006183: GTP biosynthetic process2.67E-03
87GO:0045727: positive regulation of translation2.67E-03
88GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.67E-03
89GO:0010021: amylopectin biosynthetic process2.67E-03
90GO:0009306: protein secretion3.30E-03
91GO:0045038: protein import into chloroplast thylakoid membrane3.42E-03
92GO:0016117: carotenoid biosynthetic process3.58E-03
93GO:0042335: cuticle development3.87E-03
94GO:0006662: glycerol ether metabolic process4.17E-03
95GO:0042549: photosystem II stabilization4.23E-03
96GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.23E-03
97GO:0000470: maturation of LSU-rRNA4.23E-03
98GO:0006828: manganese ion transport4.23E-03
99GO:0032973: amino acid export4.23E-03
100GO:0042372: phylloquinone biosynthetic process5.09E-03
101GO:0009082: branched-chain amino acid biosynthetic process5.09E-03
102GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.09E-03
103GO:0017148: negative regulation of translation5.09E-03
104GO:1901259: chloroplast rRNA processing5.09E-03
105GO:0009099: valine biosynthetic process5.09E-03
106GO:0010189: vitamin E biosynthetic process5.09E-03
107GO:0009854: oxidative photosynthetic carbon pathway5.09E-03
108GO:0009088: threonine biosynthetic process5.09E-03
109GO:0010019: chloroplast-nucleus signaling pathway5.09E-03
110GO:0043090: amino acid import6.02E-03
111GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.02E-03
112GO:0006400: tRNA modification6.02E-03
113GO:0048564: photosystem I assembly7.00E-03
114GO:0009642: response to light intensity7.00E-03
115GO:0006605: protein targeting7.00E-03
116GO:0010492: maintenance of shoot apical meristem identity7.00E-03
117GO:0055114: oxidation-reduction process7.03E-03
118GO:0006508: proteolysis7.23E-03
119GO:0006002: fructose 6-phosphate metabolic process8.03E-03
120GO:0019430: removal of superoxide radicals8.03E-03
121GO:0009097: isoleucine biosynthetic process8.03E-03
122GO:0009051: pentose-phosphate shunt, oxidative branch9.12E-03
123GO:0080144: amino acid homeostasis9.12E-03
124GO:0048507: meristem development9.12E-03
125GO:0000373: Group II intron splicing9.12E-03
126GO:0009790: embryo development9.93E-03
127GO:0010205: photoinhibition1.03E-02
128GO:0006779: porphyrin-containing compound biosynthetic process1.03E-02
129GO:0009098: leucine biosynthetic process1.03E-02
130GO:0009086: methionine biosynthetic process1.03E-02
131GO:0010380: regulation of chlorophyll biosynthetic process1.03E-02
132GO:0006633: fatty acid biosynthetic process1.09E-02
133GO:0009631: cold acclimation1.13E-02
134GO:0006535: cysteine biosynthetic process from serine1.14E-02
135GO:0006782: protoporphyrinogen IX biosynthetic process1.14E-02
136GO:0045036: protein targeting to chloroplast1.14E-02
137GO:0009637: response to blue light1.24E-02
138GO:0009451: RNA modification1.27E-02
139GO:0006816: calcium ion transport1.27E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.27E-02
141GO:0009073: aromatic amino acid family biosynthetic process1.27E-02
142GO:0006352: DNA-templated transcription, initiation1.27E-02
143GO:0006415: translational termination1.27E-02
144GO:0018119: peptidyl-cysteine S-nitrosylation1.27E-02
145GO:0006397: mRNA processing1.39E-02
146GO:0008152: metabolic process1.51E-02
147GO:0006094: gluconeogenesis1.53E-02
148GO:0005986: sucrose biosynthetic process1.53E-02
149GO:0010114: response to red light1.60E-02
150GO:0005985: sucrose metabolic process1.81E-02
151GO:0006636: unsaturated fatty acid biosynthetic process1.95E-02
152GO:0019344: cysteine biosynthetic process2.10E-02
153GO:0000027: ribosomal large subunit assembly2.10E-02
154GO:0009768: photosynthesis, light harvesting in photosystem I2.25E-02
155GO:0016114: terpenoid biosynthetic process2.41E-02
156GO:0006096: glycolytic process2.56E-02
157GO:0035428: hexose transmembrane transport2.57E-02
158GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.73E-02
159GO:0009411: response to UV2.73E-02
160GO:0009561: megagametogenesis2.90E-02
161GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.07E-02
162GO:0080022: primary root development3.25E-02
163GO:0046323: glucose import3.42E-02
164GO:0015986: ATP synthesis coupled proton transport3.61E-02
165GO:0019252: starch biosynthetic process3.79E-02
166GO:0008654: phospholipid biosynthetic process3.79E-02
167GO:0000302: response to reactive oxygen species3.98E-02
168GO:0032259: methylation4.30E-02
169GO:0030163: protein catabolic process4.36E-02
170GO:0042744: hydrogen peroxide catabolic process4.38E-02
171GO:0009567: double fertilization forming a zygote and endosperm4.56E-02
172GO:0009828: plant-type cell wall loosening4.56E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0046608: carotenoid isomerase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004823: leucine-tRNA ligase activity0.00E+00
14GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
15GO:0046408: chlorophyll synthetase activity0.00E+00
16GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
17GO:0019843: rRNA binding3.74E-20
18GO:0003735: structural constituent of ribosome4.18E-11
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.38E-08
20GO:0016851: magnesium chelatase activity3.00E-07
21GO:0016168: chlorophyll binding9.03E-06
22GO:0005528: FK506 binding9.16E-06
23GO:0002161: aminoacyl-tRNA editing activity2.39E-05
24GO:0008047: enzyme activator activity5.16E-05
25GO:0043023: ribosomal large subunit binding5.22E-05
26GO:0004045: aminoacyl-tRNA hydrolase activity9.22E-05
27GO:0043495: protein anchor9.22E-05
28GO:0031072: heat shock protein binding9.89E-05
29GO:0008266: poly(U) RNA binding1.19E-04
30GO:0051082: unfolded protein binding1.99E-04
31GO:0022891: substrate-specific transmembrane transporter activity3.23E-04
32GO:0019899: enzyme binding3.58E-04
33GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.92E-04
34GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.92E-04
35GO:0004425: indole-3-glycerol-phosphate synthase activity3.92E-04
36GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity3.92E-04
37GO:0004856: xylulokinase activity3.92E-04
38GO:0017169: CDP-alcohol phosphatidyltransferase activity3.92E-04
39GO:0005080: protein kinase C binding3.92E-04
40GO:0042586: peptide deformylase activity3.92E-04
41GO:0004163: diphosphomevalonate decarboxylase activity3.92E-04
42GO:0045485: omega-6 fatty acid desaturase activity3.92E-04
43GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.92E-04
44GO:0004033: aldo-keto reductase (NADP) activity4.48E-04
45GO:0004791: thioredoxin-disulfide reductase activity5.39E-04
46GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.58E-04
47GO:0016491: oxidoreductase activity8.28E-04
48GO:0033201: alpha-1,4-glucan synthase activity8.49E-04
49GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.49E-04
50GO:0016630: protochlorophyllide reductase activity8.49E-04
51GO:0000774: adenyl-nucleotide exchange factor activity8.49E-04
52GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.49E-04
53GO:0004412: homoserine dehydrogenase activity8.49E-04
54GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.49E-04
55GO:0008236: serine-type peptidase activity1.34E-03
56GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.38E-03
57GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.38E-03
58GO:0004373: glycogen (starch) synthase activity1.38E-03
59GO:0004751: ribose-5-phosphate isomerase activity1.38E-03
60GO:0008097: 5S rRNA binding1.99E-03
61GO:0052655: L-valine transaminase activity1.99E-03
62GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.99E-03
63GO:0004072: aspartate kinase activity1.99E-03
64GO:0016149: translation release factor activity, codon specific1.99E-03
65GO:0052656: L-isoleucine transaminase activity1.99E-03
66GO:0004550: nucleoside diphosphate kinase activity1.99E-03
67GO:0052654: L-leucine transaminase activity1.99E-03
68GO:0050661: NADP binding2.28E-03
69GO:0051087: chaperone binding2.31E-03
70GO:0004176: ATP-dependent peptidase activity2.54E-03
71GO:0001053: plastid sigma factor activity2.67E-03
72GO:0004345: glucose-6-phosphate dehydrogenase activity2.67E-03
73GO:0016836: hydro-lyase activity2.67E-03
74GO:0016987: sigma factor activity2.67E-03
75GO:0009011: starch synthase activity2.67E-03
76GO:0004084: branched-chain-amino-acid transaminase activity2.67E-03
77GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.67E-03
78GO:0004659: prenyltransferase activity2.67E-03
79GO:0003959: NADPH dehydrogenase activity3.42E-03
80GO:0016773: phosphotransferase activity, alcohol group as acceptor3.42E-03
81GO:0004040: amidase activity3.42E-03
82GO:0003723: RNA binding3.51E-03
83GO:0004812: aminoacyl-tRNA ligase activity3.58E-03
84GO:0047134: protein-disulfide reductase activity3.58E-03
85GO:0042802: identical protein binding3.84E-03
86GO:0004130: cytochrome-c peroxidase activity4.23E-03
87GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.23E-03
88GO:0016688: L-ascorbate peroxidase activity4.23E-03
89GO:0004124: cysteine synthase activity5.09E-03
90GO:0051920: peroxiredoxin activity5.09E-03
91GO:0016831: carboxy-lyase activity6.02E-03
92GO:0008235: metalloexopeptidase activity6.02E-03
93GO:0004620: phospholipase activity6.02E-03
94GO:0008237: metallopeptidase activity6.64E-03
95GO:0016209: antioxidant activity7.00E-03
96GO:0008312: 7S RNA binding7.00E-03
97GO:0016787: hydrolase activity7.65E-03
98GO:0003747: translation release factor activity9.12E-03
99GO:0005509: calcium ion binding9.67E-03
100GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.76E-03
101GO:0005384: manganese ion transmembrane transporter activity1.03E-02
102GO:0004222: metalloendopeptidase activity1.08E-02
103GO:0004177: aminopeptidase activity1.27E-02
104GO:0008378: galactosyltransferase activity1.40E-02
105GO:0000049: tRNA binding1.40E-02
106GO:0051539: 4 iron, 4 sulfur cluster binding1.42E-02
107GO:0009982: pseudouridine synthase activity1.53E-02
108GO:0004565: beta-galactosidase activity1.53E-02
109GO:0004022: alcohol dehydrogenase (NAD) activity1.53E-02
110GO:0015095: magnesium ion transmembrane transporter activity1.53E-02
111GO:0031409: pigment binding1.95E-02
112GO:0008168: methyltransferase activity2.04E-02
113GO:0004857: enzyme inhibitor activity2.10E-02
114GO:0005525: GTP binding2.24E-02
115GO:0043424: protein histidine kinase binding2.25E-02
116GO:0003729: mRNA binding2.41E-02
117GO:0046872: metal ion binding2.45E-02
118GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.57E-02
119GO:0003756: protein disulfide isomerase activity2.90E-02
120GO:0015035: protein disulfide oxidoreductase activity3.17E-02
121GO:0008080: N-acetyltransferase activity3.42E-02
122GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.42E-02
123GO:0005355: glucose transmembrane transporter activity3.61E-02
124GO:0050662: coenzyme binding3.61E-02
125GO:0042803: protein homodimerization activity3.71E-02
126GO:0004252: serine-type endopeptidase activity4.27E-02
127GO:0016597: amino acid binding4.96E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009507: chloroplast1.41E-115
4GO:0009570: chloroplast stroma1.03E-84
5GO:0009941: chloroplast envelope4.35E-62
6GO:0009535: chloroplast thylakoid membrane3.34E-47
7GO:0009579: thylakoid1.28E-37
8GO:0009534: chloroplast thylakoid1.45E-34
9GO:0009543: chloroplast thylakoid lumen1.53E-28
10GO:0031977: thylakoid lumen2.23E-20
11GO:0005840: ribosome1.18E-14
12GO:0009654: photosystem II oxygen evolving complex6.14E-09
13GO:0031969: chloroplast membrane6.74E-09
14GO:0010007: magnesium chelatase complex6.23E-08
15GO:0019898: extrinsic component of membrane7.66E-08
16GO:0030095: chloroplast photosystem II8.87E-08
17GO:0009533: chloroplast stromal thylakoid1.02E-05
18GO:0009523: photosystem II5.20E-05
19GO:0030529: intracellular ribonucleoprotein complex1.19E-04
20GO:0009536: plastid2.11E-04
21GO:0042651: thylakoid membrane2.22E-04
22GO:0010287: plastoglobule2.78E-04
23GO:0009547: plastid ribosome3.92E-04
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.57E-04
25GO:0030093: chloroplast photosystem I8.49E-04
26GO:0080085: signal recognition particle, chloroplast targeting8.49E-04
27GO:0009706: chloroplast inner membrane1.16E-03
28GO:0000311: plastid large ribosomal subunit1.19E-03
29GO:0033281: TAT protein transport complex1.38E-03
30GO:0009509: chromoplast1.38E-03
31GO:0000312: plastid small ribosomal subunit1.51E-03
32GO:0015935: small ribosomal subunit2.54E-03
33GO:0009526: plastid envelope2.67E-03
34GO:0055035: plastid thylakoid membrane3.42E-03
35GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.23E-03
36GO:0009522: photosystem I4.49E-03
37GO:0010319: stromule6.64E-03
38GO:0009501: amyloplast7.00E-03
39GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.03E-03
40GO:0032040: small-subunit processome1.40E-02
41GO:0009508: plastid chromosome1.53E-02
42GO:0030076: light-harvesting complex1.81E-02
43GO:0016020: membrane2.02E-02
44GO:0009532: plastid stroma2.41E-02
45GO:0005623: cell3.96E-02
46GO:0009295: nucleoid4.76E-02
47GO:0005759: mitochondrial matrix4.82E-02
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Gene type



Gene DE type