co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G10690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0006642: triglyceride mobilization	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
10	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
11	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
12	GO:0090042: tubulin deacetylation	0.00E+00
13	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
14	GO:0006399: tRNA metabolic process	0.00E+00
15	GO:0015979: photosynthesis	8.08E-15
16	GO:0009773: photosynthetic electron transport in photosystem I	2.71E-10
17	GO:0032544: plastid translation	2.96E-09
18	GO:0010027: thylakoid membrane organization	2.86E-07
19	GO:0006094: gluconeogenesis	3.02E-06
20	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.50E-06
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.50E-06
22	GO:0010196: nonphotochemical quenching	9.55E-06
23	GO:0015995: chlorophyll biosynthetic process	1.07E-05
24	GO:0071482: cellular response to light stimulus	2.05E-05
25	GO:0006000: fructose metabolic process	2.27E-05
26	GO:0006518: peptide metabolic process	2.27E-05
27	GO:0009735: response to cytokinin	2.80E-05
28	GO:0031365: N-terminal protein amino acid modification	1.37E-04
29	GO:0018298: protein-chromophore linkage	1.77E-04
30	GO:0042549: photosystem II stabilization	1.97E-04
31	GO:0009658: chloroplast organization	2.39E-04
32	GO:0010019: chloroplast-nucleus signaling pathway	2.66E-04
33	GO:0006412: translation	3.25E-04
34	GO:0006400: tRNA modification	3.44E-04
35	GO:0071588: hydrogen peroxide mediated signaling pathway	3.81E-04
36	GO:0043489: RNA stabilization	3.81E-04
37	GO:0043953: protein transport by the Tat complex	3.81E-04
38	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	3.81E-04
39	GO:0000481: maturation of 5S rRNA	3.81E-04
40	GO:0065002: intracellular protein transmembrane transport	3.81E-04
41	GO:0043686: co-translational protein modification	3.81E-04
42	GO:0034337: RNA folding	3.81E-04
43	GO:0006002: fructose 6-phosphate metabolic process	5.27E-04
44	GO:0009657: plastid organization	5.27E-04
45	GO:0010270: photosystem II oxygen evolving complex assembly	8.27E-04
46	GO:0080005: photosystem stoichiometry adjustment	8.27E-04
47	GO:1900871: chloroplast mRNA modification	8.27E-04
48	GO:0034755: iron ion transmembrane transport	8.27E-04
49	GO:0009662: etioplast organization	8.27E-04
50	GO:0006729: tetrahydrobiopterin biosynthetic process	8.27E-04
51	GO:0006568: tryptophan metabolic process	8.27E-04
52	GO:0043085: positive regulation of catalytic activity	9.99E-04
53	GO:0006352: DNA-templated transcription, initiation	9.99E-04
54	GO:0009767: photosynthetic electron transport chain	1.29E-03
55	GO:0005986: sucrose biosynthetic process	1.29E-03
56	GO:0000913: preprophase band assembly	1.34E-03
57	GO:0090391: granum assembly	1.34E-03
58	GO:0019563: glycerol catabolic process	1.34E-03
59	GO:0010581: regulation of starch biosynthetic process	1.34E-03
60	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.34E-03
61	GO:0051604: protein maturation	1.34E-03
62	GO:0030865: cortical cytoskeleton organization	1.34E-03
63	GO:0032504: multicellular organism reproduction	1.34E-03
64	GO:0019253: reductive pentose-phosphate cycle	1.46E-03
65	GO:0009152: purine ribonucleotide biosynthetic process	1.93E-03
66	GO:0046653: tetrahydrofolate metabolic process	1.93E-03
67	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.93E-03
68	GO:0010731: protein glutathionylation	1.93E-03
69	GO:0006424: glutamyl-tRNA aminoacylation	1.93E-03
70	GO:1901332: negative regulation of lateral root development	1.93E-03
71	GO:0016556: mRNA modification	1.93E-03
72	GO:0055070: copper ion homeostasis	1.93E-03
73	GO:2001141: regulation of RNA biosynthetic process	1.93E-03
74	GO:0009768: photosynthesis, light harvesting in photosystem I	2.22E-03
75	GO:0031408: oxylipin biosynthetic process	2.44E-03
76	GO:0009765: photosynthesis, light harvesting	2.60E-03
77	GO:0045727: positive regulation of translation	2.60E-03
78	GO:0015994: chlorophyll metabolic process	2.60E-03
79	GO:0006546: glycine catabolic process	2.60E-03
80	GO:0071483: cellular response to blue light	2.60E-03
81	GO:0044206: UMP salvage	2.60E-03
82	GO:0000304: response to singlet oxygen	3.32E-03
83	GO:0032543: mitochondrial translation	3.32E-03
84	GO:0006564: L-serine biosynthetic process	3.32E-03
85	GO:0043097: pyrimidine nucleoside salvage	3.32E-03
86	GO:0045038: protein import into chloroplast thylakoid membrane	3.32E-03
87	GO:0035434: copper ion transmembrane transport	3.32E-03
88	GO:0006461: protein complex assembly	3.32E-03
89	GO:0009107: lipoate biosynthetic process	3.32E-03
90	GO:0000470: maturation of LSU-rRNA	4.11E-03
91	GO:0016554: cytidine to uridine editing	4.11E-03
92	GO:0010190: cytochrome b6f complex assembly	4.11E-03
93	GO:0006828: manganese ion transport	4.11E-03
94	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.11E-03
95	GO:0006206: pyrimidine nucleobase metabolic process	4.11E-03
96	GO:0006096: glycolytic process	4.58E-03
97	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.95E-03
98	GO:0030488: tRNA methylation	4.95E-03
99	GO:0009854: oxidative photosynthetic carbon pathway	4.95E-03
100	GO:0042254: ribosome biogenesis	5.01E-03
101	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.85E-03
102	GO:0009645: response to low light intensity stimulus	5.85E-03
103	GO:0009409: response to cold	6.75E-03
104	GO:0008610: lipid biosynthetic process	6.80E-03
105	GO:0032508: DNA duplex unwinding	6.80E-03
106	GO:0010492: maintenance of shoot apical meristem identity	6.80E-03
107	GO:0019430: removal of superoxide radicals	7.80E-03
108	GO:0009051: pentose-phosphate shunt, oxidative branch	8.86E-03
109	GO:0006098: pentose-phosphate shunt	8.86E-03
110	GO:0010206: photosystem II repair	8.86E-03
111	GO:0048507: meristem development	8.86E-03
112	GO:0045454: cell redox homeostasis	8.89E-03
113	GO:0016311: dephosphorylation	8.90E-03
114	GO:1900865: chloroplast RNA modification	9.96E-03
115	GO:0010380: regulation of chlorophyll biosynthetic process	9.96E-03
116	GO:0009631: cold acclimation	1.08E-02
117	GO:0006535: cysteine biosynthetic process from serine	1.11E-02
118	GO:0048829: root cap development	1.11E-02
119	GO:0045036: protein targeting to chloroplast	1.11E-02
120	GO:0009853: photorespiration	1.19E-02
121	GO:0009637: response to blue light	1.19E-02
122	GO:0009451: RNA modification	1.20E-02
123	GO:0006816: calcium ion transport	1.23E-02
124	GO:0009073: aromatic amino acid family biosynthetic process	1.23E-02
125	GO:0006879: cellular iron ion homeostasis	1.23E-02
126	GO:0006415: translational termination	1.23E-02
127	GO:0009750: response to fructose	1.23E-02
128	GO:0034599: cellular response to oxidative stress	1.24E-02
129	GO:0030001: metal ion transport	1.36E-02
130	GO:0005983: starch catabolic process	1.36E-02
131	GO:0006457: protein folding	1.39E-02
132	GO:0008152: metabolic process	1.42E-02
133	GO:0010628: positive regulation of gene expression	1.48E-02
134	GO:0006006: glucose metabolic process	1.48E-02
135	GO:0009718: anthocyanin-containing compound biosynthetic process	1.48E-02
136	GO:0010114: response to red light	1.54E-02
137	GO:0010143: cutin biosynthetic process	1.62E-02
138	GO:0010207: photosystem II assembly	1.62E-02
139	GO:0010020: chloroplast fission	1.62E-02
140	GO:0009636: response to toxic substance	1.73E-02
141	GO:0005985: sucrose metabolic process	1.75E-02
142	GO:0090351: seedling development	1.75E-02
143	GO:0006855: drug transmembrane transport	1.80E-02
144	GO:0055114: oxidation-reduction process	1.99E-02
145	GO:0019344: cysteine biosynthetic process	2.04E-02
146	GO:0009116: nucleoside metabolic process	2.04E-02
147	GO:0000027: ribosomal large subunit assembly	2.04E-02
148	GO:0006364: rRNA processing	2.08E-02
149	GO:0006810: transport	2.18E-02
150	GO:0016575: histone deacetylation	2.19E-02
151	GO:0006418: tRNA aminoacylation for protein translation	2.19E-02
152	GO:0009695: jasmonic acid biosynthetic process	2.19E-02
153	GO:0061077: chaperone-mediated protein folding	2.34E-02
154	GO:0003333: amino acid transmembrane transport	2.34E-02
155	GO:0035428: hexose transmembrane transport	2.50E-02
156	GO:0009561: megagametogenesis	2.82E-02
157	GO:0016117: carotenoid biosynthetic process	2.98E-02
158	GO:0000226: microtubule cytoskeleton organization	3.15E-02
159	GO:0042335: cuticle development	3.15E-02
160	GO:0080022: primary root development	3.15E-02
161	GO:0006662: glycerol ether metabolic process	3.33E-02
162	GO:0046323: glucose import	3.33E-02
163	GO:0045893: positive regulation of transcription, DNA-templated	3.52E-02
164	GO:0008654: phospholipid biosynthetic process	3.68E-02
165	GO:0071554: cell wall organization or biogenesis	3.86E-02
166	GO:0000302: response to reactive oxygen species	3.86E-02
167	GO:0016032: viral process	4.05E-02
168	GO:0032502: developmental process	4.05E-02
169	GO:0055085: transmembrane transport	4.07E-02
170	GO:0042744: hydrogen peroxide catabolic process	4.21E-02
171	GO:0030163: protein catabolic process	4.24E-02
172	GO:0009567: double fertilization forming a zygote and endosperm	4.43E-02
173	GO:0071805: potassium ion transmembrane transport	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0046608: carotenoid isomerase activity	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0042903: tubulin deacetylase activity	0.00E+00
7	GO:0043014: alpha-tubulin binding	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0019843: rRNA binding	2.70E-11
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.95E-06
13	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.50E-06
14	GO:0005528: FK506 binding	8.41E-06
15	GO:0016987: sigma factor activity	8.79E-05
16	GO:0043495: protein anchor	8.79E-05
17	GO:0001053: plastid sigma factor activity	8.79E-05
18	GO:0008266: poly(U) RNA binding	1.12E-04
19	GO:0016168: chlorophyll binding	1.22E-04
20	GO:0003735: structural constituent of ribosome	2.62E-04
21	GO:0016787: hydrolase activity	3.33E-04
22	GO:0019899: enzyme binding	3.44E-04
23	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.81E-04
24	GO:0004807: triose-phosphate isomerase activity	3.81E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.81E-04
26	GO:0009496: plastoquinol--plastocyanin reductase activity	3.81E-04
27	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	3.81E-04
28	GO:0004321: fatty-acyl-CoA synthase activity	3.81E-04
29	GO:0005080: protein kinase C binding	3.81E-04
30	GO:0042586: peptide deformylase activity	3.81E-04
31	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.81E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	8.27E-04
33	GO:0000774: adenyl-nucleotide exchange factor activity	8.27E-04
34	GO:0016630: protochlorophyllide reductase activity	8.27E-04
35	GO:0050017: L-3-cyanoalanine synthase activity	8.27E-04
36	GO:0047746: chlorophyllase activity	8.27E-04
37	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.27E-04
38	GO:0008047: enzyme activator activity	8.68E-04
39	GO:0051082: unfolded protein binding	1.09E-03
40	GO:0004565: beta-galactosidase activity	1.29E-03
41	GO:0031072: heat shock protein binding	1.29E-03
42	GO:0016531: copper chaperone activity	1.34E-03
43	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.34E-03
44	GO:0019829: cation-transporting ATPase activity	1.34E-03
45	GO:0016992: lipoate synthase activity	1.34E-03
46	GO:0002161: aminoacyl-tRNA editing activity	1.34E-03
47	GO:0004751: ribose-5-phosphate isomerase activity	1.34E-03
48	GO:0030267: glyoxylate reductase (NADP) activity	1.34E-03
49	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.34E-03
50	GO:0008864: formyltetrahydrofolate deformylase activity	1.34E-03
51	GO:0031409: pigment binding	1.82E-03
52	GO:0048487: beta-tubulin binding	1.93E-03
53	GO:0016149: translation release factor activity, codon specific	1.93E-03
54	GO:0016851: magnesium chelatase activity	1.93E-03
55	GO:0043023: ribosomal large subunit binding	1.93E-03
56	GO:0015079: potassium ion transmembrane transporter activity	2.22E-03
57	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.60E-03
58	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.60E-03
59	GO:0004045: aminoacyl-tRNA hydrolase activity	2.60E-03
60	GO:0010328: auxin influx transmembrane transporter activity	2.60E-03
61	GO:0004845: uracil phosphoribosyltransferase activity	2.60E-03
62	GO:0051537: 2 iron, 2 sulfur cluster binding	2.80E-03
63	GO:0022891: substrate-specific transmembrane transporter activity	2.92E-03
64	GO:0003723: RNA binding	3.06E-03
65	GO:0003959: NADPH dehydrogenase activity	3.32E-03
66	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.32E-03
67	GO:0004332: fructose-bisphosphate aldolase activity	4.11E-03
68	GO:0004130: cytochrome-c peroxidase activity	4.11E-03
69	GO:0016688: L-ascorbate peroxidase activity	4.11E-03
70	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.11E-03
71	GO:0004791: thioredoxin-disulfide reductase activity	4.31E-03
72	GO:0050662: coenzyme binding	4.31E-03
73	GO:0004124: cysteine synthase activity	4.95E-03
74	GO:0004849: uridine kinase activity	4.95E-03
75	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.95E-03
76	GO:0016874: ligase activity	5.38E-03
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.64E-03
78	GO:0008235: metalloexopeptidase activity	5.85E-03
79	GO:0004620: phospholipase activity	5.85E-03
80	GO:0016491: oxidoreductase activity	6.36E-03
81	GO:0046872: metal ion binding	6.57E-03
82	GO:0008312: 7S RNA binding	6.80E-03
83	GO:0043022: ribosome binding	6.80E-03
84	GO:0004033: aldo-keto reductase (NADP) activity	6.80E-03
85	GO:0005525: GTP binding	6.96E-03
86	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	7.80E-03
87	GO:0005375: copper ion transmembrane transporter activity	7.80E-03
88	GO:0016207: 4-coumarate-CoA ligase activity	8.86E-03
89	GO:0003747: translation release factor activity	8.86E-03
90	GO:0008236: serine-type peptidase activity	8.90E-03
91	GO:0015238: drug transmembrane transporter activity	9.84E-03
92	GO:0005381: iron ion transmembrane transporter activity	9.96E-03
93	GO:0005384: manganese ion transmembrane transporter activity	9.96E-03
94	GO:0004222: metalloendopeptidase activity	1.03E-02
95	GO:0047372: acylglycerol lipase activity	1.23E-02
96	GO:0015386: potassium:proton antiporter activity	1.23E-02
97	GO:0004177: aminopeptidase activity	1.23E-02
98	GO:0005215: transporter activity	1.27E-02
99	GO:0000049: tRNA binding	1.36E-02
100	GO:0009055: electron carrier activity	1.36E-02
101	GO:0009982: pseudouridine synthase activity	1.48E-02
102	GO:0004364: glutathione transferase activity	1.48E-02
103	GO:0004022: alcohol dehydrogenase (NAD) activity	1.48E-02
104	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.48E-02
105	GO:0015095: magnesium ion transmembrane transporter activity	1.48E-02
106	GO:0004407: histone deacetylase activity	2.04E-02
107	GO:0051536: iron-sulfur cluster binding	2.04E-02
108	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.08E-02
109	GO:0051087: chaperone binding	2.19E-02
110	GO:0003729: mRNA binding	2.23E-02
111	GO:0005509: calcium ion binding	2.59E-02
112	GO:0004812: aminoacyl-tRNA ligase activity	2.98E-02
113	GO:0047134: protein-disulfide reductase activity	2.98E-02
114	GO:0005355: glucose transmembrane transporter activity	3.50E-02
115	GO:0010181: FMN binding	3.50E-02
116	GO:0042803: protein homodimerization activity	3.53E-02
117	GO:0016791: phosphatase activity	4.43E-02
118	GO:0004519: endonuclease activity	4.77E-02
119	GO:0016413: O-acetyltransferase activity	4.82E-02
120	GO:0016597: amino acid binding	4.82E-02
121	GO:0015297: antiporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	2.89E-86
3	GO:0009570: chloroplast stroma	2.31E-41
4	GO:0009535: chloroplast thylakoid membrane	9.32E-41
5	GO:0009941: chloroplast envelope	1.04E-38
6	GO:0009579: thylakoid	1.17E-23
7	GO:0009534: chloroplast thylakoid	5.52E-21
8	GO:0009543: chloroplast thylakoid lumen	3.75E-17
9	GO:0031969: chloroplast membrane	3.59E-10
10	GO:0031977: thylakoid lumen	4.35E-09
11	GO:0009654: photosystem II oxygen evolving complex	2.81E-07
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.04E-07
13	GO:0019898: extrinsic component of membrane	2.22E-06
14	GO:0009523: photosystem II	4.82E-05
15	GO:0005840: ribosome	1.09E-04
16	GO:0042651: thylakoid membrane	2.10E-04
17	GO:0009533: chloroplast stromal thylakoid	3.44E-04
18	GO:0031361: integral component of thylakoid membrane	3.81E-04
19	GO:0009782: photosystem I antenna complex	3.81E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.81E-04
21	GO:0009515: granal stacked thylakoid	3.81E-04
22	GO:0009547: plastid ribosome	3.81E-04
23	GO:0030981: cortical microtubule cytoskeleton	8.27E-04
24	GO:0080085: signal recognition particle, chloroplast targeting	8.27E-04
25	GO:0033281: TAT protein transport complex	1.34E-03
26	GO:0010007: magnesium chelatase complex	1.34E-03
27	GO:0010287: plastoglobule	1.41E-03
28	GO:0030095: chloroplast photosystem II	1.46E-03
29	GO:0000312: plastid small ribosomal subunit	1.46E-03
30	GO:0030076: light-harvesting complex	1.63E-03
31	GO:0016020: membrane	1.74E-03
32	GO:0009536: plastid	1.85E-03
33	GO:0009526: plastid envelope	2.60E-03
34	GO:0009512: cytochrome b6f complex	3.32E-03
35	GO:0055035: plastid thylakoid membrane	3.32E-03
36	GO:0030529: intracellular ribonucleoprotein complex	7.16E-03
37	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.80E-03
38	GO:0015934: large ribosomal subunit	1.08E-02
39	GO:0032040: small-subunit processome	1.36E-02
40	GO:0000311: plastid large ribosomal subunit	1.36E-02
41	GO:0043234: protein complex	1.89E-02
42	GO:0048046: apoplast	2.33E-02
43	GO:0015935: small ribosomal subunit	2.34E-02
44	GO:0009532: plastid stroma	2.34E-02
45	GO:0022625: cytosolic large ribosomal subunit	2.84E-02
46	GO:0009706: chloroplast inner membrane	2.96E-02
47	GO:0009522: photosystem I	3.50E-02
48	GO:0010319: stromule	4.62E-02
49	GO:0005759: mitochondrial matrix	4.63E-02