Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G09870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080094: response to trehalose-6-phosphate0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0010248: establishment or maintenance of transmembrane electrochemical gradient0.00E+00
4GO:0090393: sepal giant cell development0.00E+00
5GO:0016117: carotenoid biosynthetic process4.59E-06
6GO:0009765: photosynthesis, light harvesting3.29E-05
7GO:0016123: xanthophyll biosynthetic process5.28E-05
8GO:0042026: protein refolding1.08E-04
9GO:0006458: 'de novo' protein folding1.08E-04
10GO:0071555: cell wall organization1.25E-04
11GO:0007155: cell adhesion1.82E-04
12GO:0006169: adenosine salvage2.13E-04
13GO:0006659: phosphatidylserine biosynthetic process2.13E-04
14GO:0019510: S-adenosylhomocysteine catabolic process2.13E-04
15GO:0009629: response to gravity4.76E-04
16GO:1903338: regulation of cell wall organization or biogenesis4.76E-04
17GO:0033353: S-adenosylmethionine cycle4.76E-04
18GO:0030388: fructose 1,6-bisphosphate metabolic process4.76E-04
19GO:0010275: NAD(P)H dehydrogenase complex assembly4.76E-04
20GO:0006094: gluconeogenesis5.75E-04
21GO:0009767: photosynthetic electron transport chain5.75E-04
22GO:0019253: reductive pentose-phosphate cycle6.47E-04
23GO:0006000: fructose metabolic process7.74E-04
24GO:0046417: chorismate metabolic process7.74E-04
25GO:0006696: ergosterol biosynthetic process7.74E-04
26GO:0090506: axillary shoot meristem initiation7.74E-04
27GO:0061077: chaperone-mediated protein folding1.07E-03
28GO:0033014: tetrapyrrole biosynthetic process1.10E-03
29GO:0032877: positive regulation of DNA endoreduplication1.10E-03
30GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.10E-03
31GO:0006730: one-carbon metabolic process1.17E-03
32GO:0007005: mitochondrion organization1.17E-03
33GO:0080092: regulation of pollen tube growth1.17E-03
34GO:0031122: cytoplasmic microtubule organization1.47E-03
35GO:0006546: glycine catabolic process1.47E-03
36GO:0006021: inositol biosynthetic process1.47E-03
37GO:0019464: glycine decarboxylation via glycine cleavage system1.47E-03
38GO:0006096: glycolytic process1.56E-03
39GO:0045489: pectin biosynthetic process1.73E-03
40GO:0016120: carotene biosynthetic process1.87E-03
41GO:0046785: microtubule polymerization1.87E-03
42GO:0010236: plastoquinone biosynthetic process1.87E-03
43GO:0044209: AMP salvage1.87E-03
44GO:0019252: starch biosynthetic process1.99E-03
45GO:0009635: response to herbicide2.31E-03
46GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.31E-03
47GO:0070814: hydrogen sulfide biosynthetic process2.31E-03
48GO:0010090: trichome morphogenesis2.43E-03
49GO:0010067: procambium histogenesis2.77E-03
50GO:0017148: negative regulation of translation2.77E-03
51GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.77E-03
52GO:0006826: iron ion transport3.26E-03
53GO:0006880: intracellular sequestering of iron ion3.26E-03
54GO:0098869: cellular oxidant detoxification3.26E-03
55GO:0008610: lipid biosynthetic process3.78E-03
56GO:0005978: glycogen biosynthetic process3.78E-03
57GO:0031540: regulation of anthocyanin biosynthetic process3.78E-03
58GO:0052543: callose deposition in cell wall3.78E-03
59GO:0016559: peroxisome fission3.78E-03
60GO:0006810: transport4.14E-03
61GO:0009657: plastid organization4.33E-03
62GO:0006526: arginine biosynthetic process4.33E-03
63GO:0006002: fructose 6-phosphate metabolic process4.33E-03
64GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.33E-03
65GO:0046686: response to cadmium ion4.65E-03
66GO:0006098: pentose-phosphate shunt4.90E-03
67GO:0009821: alkaloid biosynthetic process4.90E-03
68GO:0006783: heme biosynthetic process4.90E-03
69GO:0006754: ATP biosynthetic process4.90E-03
70GO:0048589: developmental growth4.90E-03
71GO:0009056: catabolic process4.90E-03
72GO:0016051: carbohydrate biosynthetic process5.07E-03
73GO:0006779: porphyrin-containing compound biosynthetic process5.50E-03
74GO:0051555: flavonol biosynthetic process6.12E-03
75GO:0009970: cellular response to sulfate starvation6.12E-03
76GO:0019538: protein metabolic process6.12E-03
77GO:0000103: sulfate assimilation6.12E-03
78GO:0009926: auxin polar transport6.53E-03
79GO:0009744: response to sucrose6.53E-03
80GO:0009773: photosynthetic electron transport in photosystem I6.77E-03
81GO:0019684: photosynthesis, light reaction6.77E-03
82GO:0006415: translational termination6.77E-03
83GO:0009073: aromatic amino acid family biosynthetic process6.77E-03
84GO:0006879: cellular iron ion homeostasis6.77E-03
85GO:0015706: nitrate transport7.44E-03
86GO:0006006: glucose metabolic process8.13E-03
87GO:0009725: response to hormone8.13E-03
88GO:0005986: sucrose biosynthetic process8.13E-03
89GO:0010223: secondary shoot formation8.84E-03
90GO:0042343: indole glucosinolate metabolic process9.58E-03
91GO:0010167: response to nitrate9.58E-03
92GO:0010039: response to iron ion9.58E-03
93GO:0009969: xyloglucan biosynthetic process9.58E-03
94GO:0007031: peroxisome organization9.58E-03
95GO:0006833: water transport1.03E-02
96GO:0007010: cytoskeleton organization1.11E-02
97GO:0007017: microtubule-based process1.19E-02
98GO:0009768: photosynthesis, light harvesting in photosystem I1.19E-02
99GO:0015992: proton transport1.27E-02
100GO:0098542: defense response to other organism1.27E-02
101GO:0009742: brassinosteroid mediated signaling pathway1.33E-02
102GO:0019748: secondary metabolic process1.36E-02
103GO:0030245: cellulose catabolic process1.36E-02
104GO:0005975: carbohydrate metabolic process1.41E-02
105GO:0009294: DNA mediated transformation1.45E-02
106GO:0001944: vasculature development1.45E-02
107GO:0010089: xylem development1.53E-02
108GO:0000271: polysaccharide biosynthetic process1.72E-02
109GO:0034220: ion transmembrane transport1.72E-02
110GO:0010087: phloem or xylem histogenesis1.72E-02
111GO:0008360: regulation of cell shape1.81E-02
112GO:0007059: chromosome segregation1.91E-02
113GO:0009791: post-embryonic development2.00E-02
114GO:0008654: phospholipid biosynthetic process2.00E-02
115GO:0055072: iron ion homeostasis2.00E-02
116GO:0071554: cell wall organization or biogenesis2.10E-02
117GO:0000302: response to reactive oxygen species2.10E-02
118GO:0016032: viral process2.20E-02
119GO:0007264: small GTPase mediated signal transduction2.20E-02
120GO:0051607: defense response to virus2.62E-02
121GO:0016126: sterol biosynthetic process2.73E-02
122GO:0055114: oxidation-reduction process2.84E-02
123GO:0009607: response to biotic stimulus2.84E-02
124GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.84E-02
125GO:0042128: nitrate assimilation2.95E-02
126GO:0048573: photoperiodism, flowering3.07E-02
127GO:0016049: cell growth3.18E-02
128GO:0009817: defense response to fungus, incompatible interaction3.30E-02
129GO:0048481: plant ovule development3.30E-02
130GO:0018298: protein-chromophore linkage3.30E-02
131GO:0051301: cell division3.39E-02
132GO:0048767: root hair elongation3.42E-02
133GO:0009813: flavonoid biosynthetic process3.42E-02
134GO:0009407: toxin catabolic process3.54E-02
135GO:0010218: response to far red light3.54E-02
136GO:0007049: cell cycle3.76E-02
137GO:0009637: response to blue light3.91E-02
138GO:0009853: photorespiration3.91E-02
139GO:0048366: leaf development3.96E-02
140GO:0080167: response to karrikin4.17E-02
141GO:0006839: mitochondrial transport4.29E-02
142GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.31E-02
143GO:0006631: fatty acid metabolic process4.41E-02
144GO:0010114: response to red light4.68E-02
145GO:0015979: photosynthesis4.75E-02
146GO:0042546: cell wall biogenesis4.81E-02
147GO:0045454: cell redox homeostasis4.97E-02
RankGO TermAdjusted P value
1GO:0016210: naringenin-chalcone synthase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
4GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0004358: glutamate N-acetyltransferase activity0.00E+00
9GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
10GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
11GO:0000210: NAD+ diphosphatase activity7.77E-05
12GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.08E-04
13GO:0004325: ferrochelatase activity2.13E-04
14GO:0008568: microtubule-severing ATPase activity2.13E-04
15GO:0051996: squalene synthase activity2.13E-04
16GO:0010313: phytochrome binding2.13E-04
17GO:0004001: adenosine kinase activity2.13E-04
18GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.13E-04
19GO:0004013: adenosylhomocysteinase activity2.13E-04
20GO:0016757: transferase activity, transferring glycosyl groups3.00E-04
21GO:0005089: Rho guanyl-nucleotide exchange factor activity4.43E-04
22GO:0044183: protein binding involved in protein folding4.43E-04
23GO:0004512: inositol-3-phosphate synthase activity4.76E-04
24GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.76E-04
25GO:0004106: chorismate mutase activity4.76E-04
26GO:0048531: beta-1,3-galactosyltransferase activity4.76E-04
27GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.76E-04
28GO:0010291: carotene beta-ring hydroxylase activity4.76E-04
29GO:0004047: aminomethyltransferase activity4.76E-04
30GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.76E-04
31GO:0004148: dihydrolipoyl dehydrogenase activity7.74E-04
32GO:0004781: sulfate adenylyltransferase (ATP) activity7.74E-04
33GO:0070330: aromatase activity7.74E-04
34GO:0048027: mRNA 5'-UTR binding1.10E-03
35GO:0009678: hydrogen-translocating pyrophosphatase activity1.10E-03
36GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.10E-03
37GO:0016149: translation release factor activity, codon specific1.10E-03
38GO:0008199: ferric iron binding1.10E-03
39GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.10E-03
40GO:0001872: (1->3)-beta-D-glucan binding1.10E-03
41GO:0004322: ferroxidase activity1.10E-03
42GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.10E-03
43GO:0004375: glycine dehydrogenase (decarboxylating) activity1.10E-03
44GO:0051287: NAD binding1.11E-03
45GO:0008878: glucose-1-phosphate adenylyltransferase activity1.47E-03
46GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.47E-03
47GO:0018685: alkane 1-monooxygenase activity1.87E-03
48GO:0047631: ADP-ribose diphosphatase activity1.87E-03
49GO:0051082: unfolded protein binding1.97E-03
50GO:0042578: phosphoric ester hydrolase activity2.31E-03
51GO:0016688: L-ascorbate peroxidase activity2.31E-03
52GO:0080030: methyl indole-3-acetate esterase activity2.31E-03
53GO:0004332: fructose-bisphosphate aldolase activity2.31E-03
54GO:0005200: structural constituent of cytoskeleton2.74E-03
55GO:0051753: mannan synthase activity2.77E-03
56GO:0043295: glutathione binding3.26E-03
57GO:0004427: inorganic diphosphatase activity3.26E-03
58GO:0003843: 1,3-beta-D-glucan synthase activity4.33E-03
59GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.90E-03
60GO:0003747: translation release factor activity4.90E-03
61GO:0016844: strictosidine synthase activity5.50E-03
62GO:0015112: nitrate transmembrane transporter activity5.50E-03
63GO:0004185: serine-type carboxypeptidase activity6.53E-03
64GO:0004860: protein kinase inhibitor activity6.77E-03
65GO:0016788: hydrolase activity, acting on ester bonds7.04E-03
66GO:0008378: galactosyltransferase activity7.44E-03
67GO:0004565: beta-galactosidase activity8.13E-03
68GO:0008081: phosphoric diester hydrolase activity8.13E-03
69GO:0004089: carbonate dehydratase activity8.13E-03
70GO:0031072: heat shock protein binding8.13E-03
71GO:0016787: hydrolase activity8.66E-03
72GO:0031409: pigment binding1.03E-02
73GO:0004857: enzyme inhibitor activity1.11E-02
74GO:0004650: polygalacturonase activity1.15E-02
75GO:0030599: pectinesterase activity1.18E-02
76GO:0033612: receptor serine/threonine kinase binding1.27E-02
77GO:0019825: oxygen binding1.36E-02
78GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.36E-02
79GO:0008810: cellulase activity1.45E-02
80GO:0003756: protein disulfide isomerase activity1.53E-02
81GO:0016758: transferase activity, transferring hexosyl groups1.53E-02
82GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.62E-02
83GO:0005102: receptor binding1.62E-02
84GO:0019901: protein kinase binding2.00E-02
85GO:0004872: receptor activity2.00E-02
86GO:0048038: quinone binding2.10E-02
87GO:0004518: nuclease activity2.20E-02
88GO:0005506: iron ion binding2.25E-02
89GO:0008017: microtubule binding2.28E-02
90GO:0016759: cellulose synthase activity2.41E-02
91GO:0008194: UDP-glycosyltransferase activity2.44E-02
92GO:0008483: transaminase activity2.52E-02
93GO:0016722: oxidoreductase activity, oxidizing metal ions2.52E-02
94GO:0016413: O-acetyltransferase activity2.62E-02
95GO:0003824: catalytic activity2.65E-02
96GO:0015250: water channel activity2.73E-02
97GO:0016168: chlorophyll binding2.84E-02
98GO:0030247: polysaccharide binding3.07E-02
99GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.54E-02
100GO:0050897: cobalt ion binding3.66E-02
101GO:0016740: transferase activity3.90E-02
102GO:0050661: NADP binding4.29E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.30E-02
104GO:0004364: glutathione transferase activity4.55E-02
105GO:0052689: carboxylic ester hydrolase activity4.60E-02
RankGO TermAdjusted P value
1GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast3.30E-09
4GO:0009941: chloroplast envelope5.57E-07
5GO:0009570: chloroplast stroma4.04E-06
6GO:0048046: apoplast4.65E-06
7GO:0009505: plant-type cell wall4.95E-05
8GO:0009534: chloroplast thylakoid1.54E-04
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.74E-04
10GO:0009535: chloroplast thylakoid membrane3.03E-04
11GO:0031969: chloroplast membrane3.62E-04
12GO:0045254: pyruvate dehydrogenase complex4.76E-04
13GO:0005794: Golgi apparatus4.92E-04
14GO:0030095: chloroplast photosystem II6.47E-04
15GO:0009654: photosystem II oxygen evolving complex9.78E-04
16GO:0009506: plasmodesma9.92E-04
17GO:0005960: glycine cleavage complex1.10E-03
18GO:0031225: anchored component of membrane1.16E-03
19GO:0055035: plastid thylakoid membrane1.87E-03
20GO:0019898: extrinsic component of membrane1.99E-03
21GO:0010287: plastoglobule2.45E-03
22GO:0009579: thylakoid2.72E-03
23GO:0005618: cell wall3.89E-03
24GO:0005779: integral component of peroxisomal membrane4.33E-03
25GO:0000148: 1,3-beta-D-glucan synthase complex4.33E-03
26GO:0045298: tubulin complex4.90E-03
27GO:0046658: anchored component of plasma membrane5.64E-03
28GO:0016324: apical plasma membrane6.12E-03
29GO:0055028: cortical microtubule6.12E-03
30GO:0005765: lysosomal membrane6.77E-03
31GO:0009508: plastid chromosome8.13E-03
32GO:0005886: plasma membrane8.21E-03
33GO:0030176: integral component of endoplasmic reticulum membrane9.58E-03
34GO:0030076: light-harvesting complex9.58E-03
35GO:0000139: Golgi membrane1.16E-02
36GO:0016020: membrane1.17E-02
37GO:0009543: chloroplast thylakoid lumen1.58E-02
38GO:0005576: extracellular region1.68E-02
39GO:0009522: photosystem I1.91E-02
40GO:0005759: mitochondrial matrix1.98E-02
41GO:0009523: photosystem II2.00E-02
42GO:0009705: plant-type vacuole membrane2.18E-02
43GO:0005615: extracellular space2.44E-02
44GO:0009295: nucleoid2.52E-02
45GO:0005778: peroxisomal membrane2.52E-02
46GO:0010319: stromule2.52E-02
47GO:0022626: cytosolic ribosome2.89E-02
48GO:0005829: cytosol3.02E-02
49GO:0016021: integral component of membrane3.26E-02
50GO:0000325: plant-type vacuole3.66E-02
51GO:0005874: microtubule4.03E-02
52GO:0005819: spindle4.16E-02
53GO:0031902: late endosome membrane4.41E-02
54GO:0005773: vacuole4.76E-02
<
Gene type



Gene DE type