Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G08050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:0006399: tRNA metabolic process0.00E+00
10GO:0032544: plastid translation1.50E-16
11GO:0015979: photosynthesis2.13E-15
12GO:0006412: translation3.52E-09
13GO:0010027: thylakoid membrane organization4.80E-09
14GO:0009773: photosynthetic electron transport in photosystem I1.52E-08
15GO:0009735: response to cytokinin1.94E-08
16GO:0015995: chlorophyll biosynthetic process2.85E-07
17GO:0042254: ribosome biogenesis2.36E-06
18GO:1902326: positive regulation of chlorophyll biosynthetic process5.21E-06
19GO:0009772: photosynthetic electron transport in photosystem II7.14E-06
20GO:0090391: granum assembly1.84E-05
21GO:0043085: positive regulation of catalytic activity4.72E-05
22GO:0045454: cell redox homeostasis7.09E-05
23GO:0010207: photosystem II assembly8.72E-05
24GO:0010236: plastoquinone biosynthetic process1.13E-04
25GO:0045038: protein import into chloroplast thylakoid membrane1.13E-04
26GO:0006655: phosphatidylglycerol biosynthetic process1.63E-04
27GO:1901259: chloroplast rRNA processing2.22E-04
28GO:0034337: RNA folding3.40E-04
29GO:0071588: hydrogen peroxide mediated signaling pathway3.40E-04
30GO:0043489: RNA stabilization3.40E-04
31GO:0042371: vitamin K biosynthetic process3.40E-04
32GO:0043686: co-translational protein modification3.40E-04
33GO:1902458: positive regulation of stomatal opening3.40E-04
34GO:0008610: lipid biosynthetic process3.64E-04
35GO:0006729: tetrahydrobiopterin biosynthetic process7.40E-04
36GO:1903426: regulation of reactive oxygen species biosynthetic process7.40E-04
37GO:0006568: tryptophan metabolic process7.40E-04
38GO:0030388: fructose 1,6-bisphosphate metabolic process7.40E-04
39GO:0010289: homogalacturonan biosynthetic process7.40E-04
40GO:0007000: nucleolus organization7.40E-04
41GO:0010275: NAD(P)H dehydrogenase complex assembly7.40E-04
42GO:0043255: regulation of carbohydrate biosynthetic process7.40E-04
43GO:0008616: queuosine biosynthetic process7.40E-04
44GO:0009658: chloroplast organization8.32E-04
45GO:0018298: protein-chromophore linkage1.09E-03
46GO:0051211: anisotropic cell growth1.20E-03
47GO:0000280: nuclear division1.20E-03
48GO:0006000: fructose metabolic process1.20E-03
49GO:0010581: regulation of starch biosynthetic process1.20E-03
50GO:0009062: fatty acid catabolic process1.20E-03
51GO:0051604: protein maturation1.20E-03
52GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.20E-03
53GO:0019253: reductive pentose-phosphate cycle1.23E-03
54GO:0006833: water transport1.54E-03
55GO:0034599: cellular response to oxidative stress1.56E-03
56GO:0071484: cellular response to light intensity1.72E-03
57GO:0051085: chaperone mediated protein folding requiring cofactor1.72E-03
58GO:0051639: actin filament network formation1.72E-03
59GO:0080170: hydrogen peroxide transmembrane transport1.72E-03
60GO:0006424: glutamyl-tRNA aminoacylation1.72E-03
61GO:1901332: negative regulation of lateral root development1.72E-03
62GO:0010088: phloem development1.72E-03
63GO:0006986: response to unfolded protein1.72E-03
64GO:0055070: copper ion homeostasis1.72E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.72E-03
66GO:2001141: regulation of RNA biosynthetic process1.72E-03
67GO:0030245: cellulose catabolic process2.26E-03
68GO:0051764: actin crosslink formation2.31E-03
69GO:0006661: phosphatidylinositol biosynthetic process2.31E-03
70GO:0009765: photosynthesis, light harvesting2.31E-03
71GO:0006109: regulation of carbohydrate metabolic process2.31E-03
72GO:0045727: positive regulation of translation2.31E-03
73GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.31E-03
74GO:0009306: protein secretion2.68E-03
75GO:0032543: mitochondrial translation2.96E-03
76GO:0016120: carotene biosynthetic process2.96E-03
77GO:0031365: N-terminal protein amino acid modification2.96E-03
78GO:0034220: ion transmembrane transport3.13E-03
79GO:0000413: protein peptidyl-prolyl isomerization3.13E-03
80GO:0006662: glycerol ether metabolic process3.38E-03
81GO:0015986: ATP synthesis coupled proton transport3.63E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-03
83GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.65E-03
84GO:0010337: regulation of salicylic acid metabolic process3.65E-03
85GO:0009955: adaxial/abaxial pattern specification4.40E-03
86GO:0042372: phylloquinone biosynthetic process4.40E-03
87GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.40E-03
88GO:0017148: negative regulation of translation4.40E-03
89GO:0010189: vitamin E biosynthetic process4.40E-03
90GO:0010019: chloroplast-nucleus signaling pathway4.40E-03
91GO:0009409: response to cold4.64E-03
92GO:0009395: phospholipid catabolic process5.19E-03
93GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.19E-03
94GO:0010196: nonphotochemical quenching5.19E-03
95GO:1900057: positive regulation of leaf senescence5.19E-03
96GO:0006810: transport5.53E-03
97GO:0016559: peroxisome fission6.03E-03
98GO:0048564: photosystem I assembly6.03E-03
99GO:0009642: response to light intensity6.03E-03
100GO:0006605: protein targeting6.03E-03
101GO:2000070: regulation of response to water deprivation6.03E-03
102GO:0006002: fructose 6-phosphate metabolic process6.92E-03
103GO:0071482: cellular response to light stimulus6.92E-03
104GO:0015996: chlorophyll catabolic process6.92E-03
105GO:0019430: removal of superoxide radicals6.92E-03
106GO:0007186: G-protein coupled receptor signaling pathway6.92E-03
107GO:0042744: hydrogen peroxide catabolic process7.33E-03
108GO:0010206: photosystem II repair7.85E-03
109GO:0006754: ATP biosynthetic process7.85E-03
110GO:0009817: defense response to fungus, incompatible interaction7.88E-03
111GO:0006633: fatty acid biosynthetic process8.31E-03
112GO:0006779: porphyrin-containing compound biosynthetic process8.82E-03
113GO:0042761: very long-chain fatty acid biosynthetic process8.82E-03
114GO:0010380: regulation of chlorophyll biosynthetic process8.82E-03
115GO:0009631: cold acclimation9.11E-03
116GO:0006782: protoporphyrinogen IX biosynthetic process9.84E-03
117GO:0006535: cysteine biosynthetic process from serine9.84E-03
118GO:0006032: chitin catabolic process9.84E-03
119GO:0055085: transmembrane transport9.96E-03
120GO:0009637: response to blue light1.00E-02
121GO:0006457: protein folding1.03E-02
122GO:0055114: oxidation-reduction process1.06E-02
123GO:0009073: aromatic amino acid family biosynthetic process1.09E-02
124GO:0006352: DNA-templated transcription, initiation1.09E-02
125GO:0006415: translational termination1.09E-02
126GO:0008152: metabolic process1.09E-02
127GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-02
128GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-02
129GO:0045037: protein import into chloroplast stroma1.20E-02
130GO:0010114: response to red light1.29E-02
131GO:0006094: gluconeogenesis1.31E-02
132GO:0005986: sucrose biosynthetic process1.31E-02
133GO:0006006: glucose metabolic process1.31E-02
134GO:0009718: anthocyanin-containing compound biosynthetic process1.31E-02
135GO:0010020: chloroplast fission1.43E-02
136GO:0010053: root epidermal cell differentiation1.55E-02
137GO:0046688: response to copper ion1.55E-02
138GO:0009825: multidimensional cell growth1.55E-02
139GO:0010167: response to nitrate1.55E-02
140GO:0005985: sucrose metabolic process1.55E-02
141GO:0010025: wax biosynthetic process1.67E-02
142GO:0009809: lignin biosynthetic process1.75E-02
143GO:0006364: rRNA processing1.75E-02
144GO:0019344: cysteine biosynthetic process1.80E-02
145GO:0000027: ribosomal large subunit assembly1.80E-02
146GO:0051017: actin filament bundle assembly1.80E-02
147GO:0009695: jasmonic acid biosynthetic process1.93E-02
148GO:0043622: cortical microtubule organization1.93E-02
149GO:0007017: microtubule-based process1.93E-02
150GO:0009768: photosynthesis, light harvesting in photosystem I1.93E-02
151GO:0006096: glycolytic process2.07E-02
152GO:0031408: oxylipin biosynthetic process2.07E-02
153GO:0016114: terpenoid biosynthetic process2.07E-02
154GO:0016998: cell wall macromolecule catabolic process2.07E-02
155GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.35E-02
156GO:0009411: response to UV2.35E-02
157GO:0016117: carotenoid biosynthetic process2.64E-02
158GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.64E-02
159GO:0042335: cuticle development2.79E-02
160GO:0080022: primary root development2.79E-02
161GO:0010182: sugar mediated signaling pathway2.94E-02
162GO:0006869: lipid transport3.01E-02
163GO:0008654: phospholipid biosynthetic process3.25E-02
164GO:0000302: response to reactive oxygen species3.42E-02
165GO:0006635: fatty acid beta-oxidation3.42E-02
166GO:0006629: lipid metabolic process3.49E-02
167GO:0009790: embryo development3.63E-02
168GO:0009567: double fertilization forming a zygote and endosperm3.92E-02
169GO:0009828: plant-type cell wall loosening3.92E-02
170GO:0000910: cytokinesis4.26E-02
171GO:0009451: RNA modification4.39E-02
172GO:0016126: sterol biosynthetic process4.44E-02
173GO:0042128: nitrate assimilation4.80E-02
RankGO TermAdjusted P value
1GO:0005048: signal sequence binding0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
10GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0019843: rRNA binding1.04E-17
13GO:0003735: structural constituent of ribosome3.88E-09
14GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.21E-06
15GO:0008047: enzyme activator activity3.71E-05
16GO:0016851: magnesium chelatase activity4.07E-05
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.35E-05
18GO:0043495: protein anchor7.23E-05
19GO:0008266: poly(U) RNA binding8.72E-05
20GO:0016168: chlorophyll binding8.98E-05
21GO:0051920: peroxiredoxin activity2.22E-04
22GO:0019899: enzyme binding2.89E-04
23GO:0008809: carnitine racemase activity3.40E-04
24GO:0050139: nicotinate-N-glucosyltransferase activity3.40E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity3.40E-04
26GO:0009496: plastoquinol--plastocyanin reductase activity3.40E-04
27GO:0008444: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity3.40E-04
28GO:0017169: CDP-alcohol phosphatidyltransferase activity3.40E-04
29GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.40E-04
30GO:0004321: fatty-acyl-CoA synthase activity3.40E-04
31GO:0005080: protein kinase C binding3.40E-04
32GO:0042586: peptide deformylase activity3.40E-04
33GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.40E-04
34GO:0004163: diphosphomevalonate decarboxylase activity3.40E-04
35GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.40E-04
36GO:0016209: antioxidant activity3.64E-04
37GO:0004791: thioredoxin-disulfide reductase activity4.11E-04
38GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.81E-04
39GO:0042802: identical protein binding5.87E-04
40GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.40E-04
41GO:0008479: queuine tRNA-ribosyltransferase activity7.40E-04
42GO:0016630: protochlorophyllide reductase activity7.40E-04
43GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.40E-04
44GO:0004148: dihydrolipoyl dehydrogenase activity1.20E-03
45GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.20E-03
46GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.20E-03
47GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.23E-03
48GO:0005528: FK506 binding1.70E-03
49GO:0008097: 5S rRNA binding1.72E-03
50GO:0048487: beta-tubulin binding1.72E-03
51GO:0016149: translation release factor activity, codon specific1.72E-03
52GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.72E-03
53GO:0043023: ribosomal large subunit binding1.72E-03
54GO:0004165: dodecenoyl-CoA delta-isomerase activity1.72E-03
55GO:0051087: chaperone binding1.88E-03
56GO:0001053: plastid sigma factor activity2.31E-03
57GO:0016836: hydro-lyase activity2.31E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.31E-03
59GO:0016987: sigma factor activity2.31E-03
60GO:0004659: prenyltransferase activity2.31E-03
61GO:0022891: substrate-specific transmembrane transporter activity2.46E-03
62GO:0008810: cellulase activity2.46E-03
63GO:0047134: protein-disulfide reductase activity2.90E-03
64GO:0003959: NADPH dehydrogenase activity2.96E-03
65GO:0004040: amidase activity2.96E-03
66GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.38E-03
67GO:0004130: cytochrome-c peroxidase activity3.65E-03
68GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.65E-03
69GO:0016688: L-ascorbate peroxidase activity3.65E-03
70GO:0016788: hydrolase activity, acting on ester bonds3.86E-03
71GO:0004124: cysteine synthase activity4.40E-03
72GO:0004620: phospholipase activity5.19E-03
73GO:0008312: 7S RNA binding6.03E-03
74GO:0052747: sinapyl alcohol dehydrogenase activity6.03E-03
75GO:0015250: water channel activity6.03E-03
76GO:0004033: aldo-keto reductase (NADP) activity6.03E-03
77GO:0004714: transmembrane receptor protein tyrosine kinase activity6.03E-03
78GO:0005509: calcium ion binding6.36E-03
79GO:0008236: serine-type peptidase activity7.48E-03
80GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.85E-03
81GO:0016207: 4-coumarate-CoA ligase activity7.85E-03
82GO:0003747: translation release factor activity7.85E-03
83GO:0003924: GTPase activity9.40E-03
84GO:0004568: chitinase activity9.84E-03
85GO:0030234: enzyme regulator activity9.84E-03
86GO:0047372: acylglycerol lipase activity1.09E-02
87GO:0008378: galactosyltransferase activity1.20E-02
88GO:0045551: cinnamyl-alcohol dehydrogenase activity1.20E-02
89GO:0016491: oxidoreductase activity1.27E-02
90GO:0009982: pseudouridine synthase activity1.31E-02
91GO:0004565: beta-galactosidase activity1.31E-02
92GO:0008081: phosphoric diester hydrolase activity1.31E-02
93GO:0031072: heat shock protein binding1.31E-02
94GO:0008289: lipid binding1.55E-02
95GO:0003729: mRNA binding1.61E-02
96GO:0004601: peroxidase activity1.63E-02
97GO:0031409: pigment binding1.67E-02
98GO:0004857: enzyme inhibitor activity1.80E-02
99GO:0043424: protein histidine kinase binding1.93E-02
100GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.21E-02
101GO:0080043: quercetin 3-O-glucosyltransferase activity2.27E-02
102GO:0080044: quercetin 7-O-glucosyltransferase activity2.27E-02
103GO:0030570: pectate lyase activity2.35E-02
104GO:0051082: unfolded protein binding2.49E-02
105GO:0015035: protein disulfide oxidoreductase activity2.56E-02
106GO:0042803: protein homodimerization activity2.85E-02
107GO:0050662: coenzyme binding3.10E-02
108GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.35E-02
109GO:0005507: copper ion binding3.74E-02
110GO:0051015: actin filament binding3.75E-02
111GO:0005200: structural constituent of cytoskeleton4.09E-02
112GO:0005525: GTP binding4.60E-02
113GO:0008194: UDP-glycosyltransferase activity4.79E-02
114GO:0030247: polysaccharide binding4.98E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0009507: chloroplast5.86E-71
3GO:0009570: chloroplast stroma1.35E-52
4GO:0009941: chloroplast envelope1.72E-44
5GO:0009535: chloroplast thylakoid membrane1.66E-42
6GO:0009534: chloroplast thylakoid3.85E-36
7GO:0009579: thylakoid1.06E-34
8GO:0009543: chloroplast thylakoid lumen6.19E-21
9GO:0031977: thylakoid lumen1.68E-17
10GO:0005840: ribosome2.86E-12
11GO:0009654: photosystem II oxygen evolving complex4.38E-11
12GO:0019898: extrinsic component of membrane3.92E-08
13GO:0030095: chloroplast photosystem II2.76E-06
14GO:0010007: magnesium chelatase complex1.84E-05
15GO:0010319: stromule6.49E-05
16GO:0055035: plastid thylakoid membrane1.13E-04
17GO:0009706: chloroplast inner membrane1.30E-04
18GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)1.63E-04
19GO:0031969: chloroplast membrane2.63E-04
20GO:0009533: chloroplast stromal thylakoid2.89E-04
21GO:0009515: granal stacked thylakoid3.40E-04
22GO:0009547: plastid ribosome3.40E-04
23GO:0048046: apoplast3.63E-04
24GO:0009523: photosystem II4.50E-04
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.35E-04
26GO:0046658: anchored component of plasma membrane6.31E-04
27GO:0016020: membrane7.13E-04
28GO:0030093: chloroplast photosystem I7.40E-04
29GO:0080085: signal recognition particle, chloroplast targeting7.40E-04
30GO:0000311: plastid large ribosomal subunit9.69E-04
31GO:0010287: plastoglobule1.09E-03
32GO:0009528: plastid inner membrane1.20E-03
33GO:0033281: TAT protein transport complex1.20E-03
34GO:0009509: chromoplast1.20E-03
35GO:0009536: plastid1.22E-03
36GO:0000312: plastid small ribosomal subunit1.23E-03
37GO:0015630: microtubule cytoskeleton1.72E-03
38GO:0032432: actin filament bundle1.72E-03
39GO:0042651: thylakoid membrane1.88E-03
40GO:0009527: plastid outer membrane2.31E-03
41GO:0009526: plastid envelope2.31E-03
42GO:0009544: chloroplast ATP synthase complex2.31E-03
43GO:0009512: cytochrome b6f complex2.96E-03
44GO:0005618: cell wall3.22E-03
45GO:0009522: photosystem I3.63E-03
46GO:0009539: photosystem II reaction center6.92E-03
47GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.92E-03
48GO:0008180: COP9 signalosome7.85E-03
49GO:0005763: mitochondrial small ribosomal subunit7.85E-03
50GO:0009707: chloroplast outer membrane7.88E-03
51GO:0015934: large ribosomal subunit9.11E-03
52GO:0005884: actin filament1.09E-02
53GO:0032040: small-subunit processome1.20E-02
54GO:0009508: plastid chromosome1.31E-02
55GO:0030076: light-harvesting complex1.55E-02
56GO:0015935: small ribosomal subunit2.07E-02
57GO:0009532: plastid stroma2.07E-02
58GO:0005777: peroxisome2.73E-02
59GO:0005759: mitochondrial matrix3.91E-02
60GO:0009295: nucleoid4.09E-02
61GO:0031225: anchored component of membrane4.27E-02
62GO:0005802: trans-Golgi network4.43E-02
63GO:0030529: intracellular ribonucleoprotein complex4.44E-02
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Gene type



Gene DE type