Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G06980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010243: response to organonitrogen compound0.00E+00
2GO:0046677: response to antibiotic0.00E+00
3GO:0007623: circadian rhythm5.64E-09
4GO:0009723: response to ethylene1.67E-06
5GO:0050992: dimethylallyl diphosphate biosynthetic process3.21E-05
6GO:0042754: negative regulation of circadian rhythm3.21E-05
7GO:0043496: regulation of protein homodimerization activity3.21E-05
8GO:0009651: response to salt stress5.19E-05
9GO:0090153: regulation of sphingolipid biosynthetic process5.78E-05
10GO:1902448: positive regulation of shade avoidance5.78E-05
11GO:0071230: cellular response to amino acid stimulus5.78E-05
12GO:0010023: proanthocyanidin biosynthetic process1.22E-04
13GO:0016123: xanthophyll biosynthetic process1.59E-04
14GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.98E-04
15GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.82E-04
16GO:1900056: negative regulation of leaf senescence2.82E-04
17GO:0045893: positive regulation of transcription, DNA-templated3.14E-04
18GO:0048574: long-day photoperiodism, flowering3.73E-04
19GO:0010100: negative regulation of photomorphogenesis3.73E-04
20GO:0010380: regulation of chlorophyll biosynthetic process4.69E-04
21GO:0009688: abscisic acid biosynthetic process5.20E-04
22GO:0009641: shade avoidance5.20E-04
23GO:0006816: calcium ion transport5.71E-04
24GO:0009739: response to gibberellin6.14E-04
25GO:0018107: peptidyl-threonine phosphorylation6.76E-04
26GO:0009718: anthocyanin-containing compound biosynthetic process6.76E-04
27GO:0006351: transcription, DNA-templated6.76E-04
28GO:0010223: secondary shoot formation7.31E-04
29GO:0009266: response to temperature stimulus7.31E-04
30GO:0090351: seedling development7.88E-04
31GO:0006874: cellular calcium ion homeostasis9.61E-04
32GO:0010017: red or far-red light signaling pathway1.08E-03
33GO:0046686: response to cadmium ion1.11E-03
34GO:0045892: negative regulation of transcription, DNA-templated1.23E-03
35GO:0010182: sugar mediated signaling pathway1.40E-03
36GO:0009751: response to salicylic acid1.47E-03
37GO:0009753: response to jasmonic acid1.59E-03
38GO:0009737: response to abscisic acid1.64E-03
39GO:0006355: regulation of transcription, DNA-templated1.66E-03
40GO:0009630: gravitropism1.68E-03
41GO:0048573: photoperiodism, flowering2.30E-03
42GO:0015995: chlorophyll biosynthetic process2.30E-03
43GO:0000160: phosphorelay signal transduction system2.55E-03
44GO:0009416: response to light stimulus2.60E-03
45GO:0009910: negative regulation of flower development2.71E-03
46GO:0006865: amino acid transport2.80E-03
47GO:0045087: innate immune response2.89E-03
48GO:0010114: response to red light3.43E-03
49GO:0009640: photomorphogenesis3.43E-03
50GO:0009644: response to high light intensity3.61E-03
51GO:0018105: peptidyl-serine phosphorylation5.45E-03
52GO:0010228: vegetative to reproductive phase transition of meristem8.05E-03
53GO:0010468: regulation of gene expression8.82E-03
54GO:0009658: chloroplast organization1.06E-02
55GO:0006970: response to osmotic stress1.11E-02
56GO:0080167: response to karrikin1.23E-02
57GO:0044550: secondary metabolite biosynthetic process1.31E-02
58GO:0032259: methylation1.57E-02
59GO:0009408: response to heat1.62E-02
60GO:0008152: metabolic process1.74E-02
61GO:0009555: pollen development2.44E-02
62GO:0009611: response to wounding2.48E-02
63GO:0035556: intracellular signal transduction2.54E-02
64GO:0009414: response to water deprivation3.97E-02
65GO:0009733: response to auxin4.39E-02
66GO:0055114: oxidation-reduction process4.72E-02
RankGO TermAdjusted P value
1GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity0.00E+00
2GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
3GO:0019904: protein domain specific binding6.19E-06
4GO:0008066: glutamate receptor activity1.21E-05
5GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity1.21E-05
6GO:0008158: hedgehog receptor activity1.21E-05
7GO:0080045: quercetin 3'-O-glucosyltransferase activity3.21E-05
8GO:0010277: chlorophyllide a oxygenase [overall] activity5.78E-05
9GO:0051538: 3 iron, 4 sulfur cluster binding1.59E-04
10GO:0080046: quercetin 4'-O-glucosyltransferase activity1.98E-04
11GO:0071949: FAD binding4.21E-04
12GO:0000989: transcription factor activity, transcription factor binding4.21E-04
13GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity5.20E-04
14GO:0003700: transcription factor activity, sequence-specific DNA binding6.39E-04
15GO:0005262: calcium channel activity6.76E-04
16GO:0004970: ionotropic glutamate receptor activity7.88E-04
17GO:0005217: intracellular ligand-gated ion channel activity7.88E-04
18GO:0003712: transcription cofactor activity7.88E-04
19GO:0003677: DNA binding8.99E-04
20GO:0000156: phosphorelay response regulator activity1.76E-03
21GO:0051537: 2 iron, 2 sulfur cluster binding3.61E-03
22GO:0015171: amino acid transmembrane transporter activity4.50E-03
23GO:0080043: quercetin 3-O-glucosyltransferase activity5.02E-03
24GO:0080044: quercetin 7-O-glucosyltransferase activity5.02E-03
25GO:0016874: ligase activity5.13E-03
26GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.35E-03
27GO:0008194: UDP-glycosyltransferase activity8.43E-03
28GO:0008168: methyltransferase activity1.03E-02
29GO:0005515: protein binding3.07E-02
30GO:0008270: zinc ion binding3.74E-02
31GO:0005506: iron ion binding3.99E-02
RankGO TermAdjusted P value
1GO:0042651: thylakoid membrane9.61E-04
2GO:0009706: chloroplast inner membrane5.34E-03
3GO:0009535: chloroplast thylakoid membrane1.17E-02
4GO:0031969: chloroplast membrane1.23E-02
5GO:0043231: intracellular membrane-bounded organelle1.74E-02
6GO:0009941: chloroplast envelope2.46E-02
7GO:0009570: chloroplast stroma3.44E-02
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Gene type



Gene DE type