Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G06290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
6GO:0006223: uracil salvage0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0015805: S-adenosyl-L-methionine transport0.00E+00
11GO:0006642: triglyceride mobilization0.00E+00
12GO:0042407: cristae formation0.00E+00
13GO:0010394: homogalacturonan metabolic process0.00E+00
14GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
15GO:0097164: ammonium ion metabolic process0.00E+00
16GO:0042493: response to drug0.00E+00
17GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
18GO:0006412: translation3.74E-12
19GO:0042254: ribosome biogenesis1.95E-08
20GO:0032544: plastid translation6.65E-08
21GO:0009735: response to cytokinin1.78E-07
22GO:0015976: carbon utilization2.33E-07
23GO:0071258: cellular response to gravity2.65E-06
24GO:0006633: fatty acid biosynthetic process1.09E-05
25GO:2000122: negative regulation of stomatal complex development3.99E-05
26GO:0010037: response to carbon dioxide3.99E-05
27GO:0015979: photosynthesis1.10E-04
28GO:0009411: response to UV1.18E-04
29GO:0000413: protein peptidyl-prolyl isomerization1.68E-04
30GO:0045488: pectin metabolic process2.39E-04
31GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.39E-04
32GO:0043489: RNA stabilization2.39E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process2.39E-04
34GO:0010442: guard cell morphogenesis2.39E-04
35GO:0010480: microsporocyte differentiation2.39E-04
36GO:0046166: glyceraldehyde-3-phosphate biosynthetic process2.39E-04
37GO:0042547: cell wall modification involved in multidimensional cell growth2.39E-04
38GO:1904964: positive regulation of phytol biosynthetic process2.39E-04
39GO:0006096: glycolytic process2.83E-04
40GO:0043085: positive regulation of catalytic activity5.19E-04
41GO:0006529: asparagine biosynthetic process5.29E-04
42GO:0006729: tetrahydrobiopterin biosynthetic process5.29E-04
43GO:0043039: tRNA aminoacylation5.29E-04
44GO:0052541: plant-type cell wall cellulose metabolic process5.29E-04
45GO:0006695: cholesterol biosynthetic process5.29E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process5.29E-04
47GO:0070981: L-asparagine biosynthetic process5.29E-04
48GO:0006423: cysteinyl-tRNA aminoacylation5.29E-04
49GO:0010020: chloroplast fission7.56E-04
50GO:0019253: reductive pentose-phosphate cycle7.56E-04
51GO:2001295: malonyl-CoA biosynthetic process8.60E-04
52GO:0032504: multicellular organism reproduction8.60E-04
53GO:0019563: glycerol catabolic process8.60E-04
54GO:0010581: regulation of starch biosynthetic process8.60E-04
55GO:0006418: tRNA aminoacylation for protein translation1.14E-03
56GO:0051085: chaperone mediated protein folding requiring cofactor1.23E-03
57GO:0006241: CTP biosynthetic process1.23E-03
58GO:0009650: UV protection1.23E-03
59GO:0006424: glutamyl-tRNA aminoacylation1.23E-03
60GO:0006165: nucleoside diphosphate phosphorylation1.23E-03
61GO:0006228: UTP biosynthetic process1.23E-03
62GO:0010088: phloem development1.23E-03
63GO:0006986: response to unfolded protein1.23E-03
64GO:0055070: copper ion homeostasis1.23E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.23E-03
66GO:0006542: glutamine biosynthetic process1.64E-03
67GO:0006808: regulation of nitrogen utilization1.64E-03
68GO:0019676: ammonia assimilation cycle1.64E-03
69GO:0006085: acetyl-CoA biosynthetic process1.64E-03
70GO:0006183: GTP biosynthetic process1.64E-03
71GO:0006546: glycine catabolic process1.64E-03
72GO:0044206: UMP salvage1.64E-03
73GO:0009658: chloroplast organization1.70E-03
74GO:0048359: mucilage metabolic process involved in seed coat development2.09E-03
75GO:0032543: mitochondrial translation2.09E-03
76GO:0010236: plastoquinone biosynthetic process2.09E-03
77GO:0043097: pyrimidine nucleoside salvage2.09E-03
78GO:0042549: photosystem II stabilization2.57E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.57E-03
80GO:0006555: methionine metabolic process2.57E-03
81GO:0006796: phosphate-containing compound metabolic process2.57E-03
82GO:0010190: cytochrome b6f complex assembly2.57E-03
83GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.57E-03
84GO:0006206: pyrimidine nucleobase metabolic process2.57E-03
85GO:0042742: defense response to bacterium2.68E-03
86GO:0010555: response to mannitol3.09E-03
87GO:0009955: adaxial/abaxial pattern specification3.09E-03
88GO:0017148: negative regulation of translation3.09E-03
89GO:0006694: steroid biosynthetic process3.09E-03
90GO:1901259: chloroplast rRNA processing3.09E-03
91GO:0010189: vitamin E biosynthetic process3.09E-03
92GO:0009854: oxidative photosynthetic carbon pathway3.09E-03
93GO:0048437: floral organ development3.64E-03
94GO:0009642: response to light intensity4.23E-03
95GO:0009817: defense response to fungus, incompatible interaction4.70E-03
96GO:0009808: lignin metabolic process4.84E-03
97GO:0009932: cell tip growth4.84E-03
98GO:0019430: removal of superoxide radicals4.84E-03
99GO:0009657: plastid organization4.84E-03
100GO:0010119: regulation of stomatal movement5.43E-03
101GO:0015780: nucleotide-sugar transport5.48E-03
102GO:0010206: photosystem II repair5.48E-03
103GO:0045337: farnesyl diphosphate biosynthetic process5.48E-03
104GO:0033384: geranyl diphosphate biosynthetic process5.48E-03
105GO:0043067: regulation of programmed cell death6.15E-03
106GO:0035999: tetrahydrofolate interconversion6.15E-03
107GO:0010380: regulation of chlorophyll biosynthetic process6.15E-03
108GO:0046686: response to cadmium ion6.41E-03
109GO:0045036: protein targeting to chloroplast6.85E-03
110GO:0006949: syncytium formation6.85E-03
111GO:0043069: negative regulation of programmed cell death6.85E-03
112GO:0048829: root cap development6.85E-03
113GO:0006631: fatty acid metabolic process7.08E-03
114GO:0009773: photosynthetic electron transport in photosystem I7.58E-03
115GO:0048229: gametophyte development7.58E-03
116GO:0006790: sulfur compound metabolic process8.33E-03
117GO:0009718: anthocyanin-containing compound biosynthetic process9.11E-03
118GO:0010075: regulation of meristem growth9.11E-03
119GO:0006094: gluconeogenesis9.11E-03
120GO:0006006: glucose metabolic process9.11E-03
121GO:0006807: nitrogen compound metabolic process9.11E-03
122GO:0009934: regulation of meristem structural organization9.92E-03
123GO:0010143: cutin biosynthetic process9.92E-03
124GO:0010207: photosystem II assembly9.92E-03
125GO:0006541: glutamine metabolic process9.92E-03
126GO:0046854: phosphatidylinositol phosphorylation1.07E-02
127GO:0046688: response to copper ion1.07E-02
128GO:0006071: glycerol metabolic process1.16E-02
129GO:0006833: water transport1.16E-02
130GO:0055114: oxidation-reduction process1.22E-02
131GO:0019344: cysteine biosynthetic process1.25E-02
132GO:0009116: nucleoside metabolic process1.25E-02
133GO:0000027: ribosomal large subunit assembly1.25E-02
134GO:0010026: trichome differentiation1.34E-02
135GO:0007017: microtubule-based process1.34E-02
136GO:0009793: embryo development ending in seed dormancy1.38E-02
137GO:0045454: cell redox homeostasis1.40E-02
138GO:0003333: amino acid transmembrane transport1.43E-02
139GO:0006457: protein folding1.51E-02
140GO:0009409: response to cold1.53E-02
141GO:0009814: defense response, incompatible interaction1.53E-02
142GO:0006730: one-carbon metabolic process1.53E-02
143GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.62E-02
144GO:0040007: growth1.62E-02
145GO:0006629: lipid metabolic process1.82E-02
146GO:0048653: anther development1.93E-02
147GO:0042335: cuticle development1.93E-02
148GO:0080022: primary root development1.93E-02
149GO:0034220: ion transmembrane transport1.93E-02
150GO:0045489: pectin biosynthetic process2.03E-02
151GO:0006662: glycerol ether metabolic process2.03E-02
152GO:0010197: polar nucleus fusion2.03E-02
153GO:0007018: microtubule-based movement2.14E-02
154GO:0009646: response to absence of light2.14E-02
155GO:0016132: brassinosteroid biosynthetic process2.36E-02
156GO:0002229: defense response to oomycetes2.36E-02
157GO:0032502: developmental process2.47E-02
158GO:0009630: gravitropism2.47E-02
159GO:0045490: pectin catabolic process2.56E-02
160GO:0009451: RNA modification2.62E-02
161GO:0009828: plant-type cell wall loosening2.71E-02
162GO:0009734: auxin-activated signaling pathway2.80E-02
163GO:0010027: thylakoid membrane organization3.07E-02
164GO:0009627: systemic acquired resistance3.32E-02
165GO:0015995: chlorophyll biosynthetic process3.45E-02
166GO:0010411: xyloglucan metabolic process3.45E-02
167GO:0016311: dephosphorylation3.58E-02
168GO:0048481: plant ovule development3.71E-02
169GO:0018298: protein-chromophore linkage3.71E-02
170GO:0009416: response to light stimulus3.73E-02
171GO:0009826: unidimensional cell growth3.81E-02
172GO:0009834: plant-type secondary cell wall biogenesis3.97E-02
173GO:0009407: toxin catabolic process3.97E-02
174GO:0007568: aging4.11E-02
175GO:0009631: cold acclimation4.11E-02
176GO:0006865: amino acid transport4.25E-02
177GO:0009853: photorespiration4.39E-02
178GO:0045087: innate immune response4.39E-02
179GO:0034599: cellular response to oxidative stress4.53E-02
180GO:0030001: metal ion transport4.81E-02
181GO:0006839: mitochondrial transport4.81E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0050614: delta24-sterol reductase activity0.00E+00
3GO:0010307: acetylglutamate kinase regulator activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
6GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
7GO:0008887: glycerate kinase activity0.00E+00
8GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0019843: rRNA binding4.42E-16
13GO:0003735: structural constituent of ribosome4.13E-15
14GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity2.65E-06
15GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.19E-05
16GO:0004089: carbonate dehydratase activity3.25E-05
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.68E-04
18GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.39E-04
19GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity2.39E-04
20GO:0004560: alpha-L-fucosidase activity2.39E-04
21GO:0004807: triose-phosphate isomerase activity2.39E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.39E-04
23GO:0080132: fatty acid alpha-hydroxylase activity2.39E-04
24GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.39E-04
25GO:0004831: tyrosine-tRNA ligase activity2.39E-04
26GO:0004071: aspartate-ammonia ligase activity2.39E-04
27GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.39E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.39E-04
29GO:0008047: enzyme activator activity4.48E-04
30GO:0004047: aminomethyltransferase activity5.29E-04
31GO:0004817: cysteine-tRNA ligase activity5.29E-04
32GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.29E-04
33GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.29E-04
34GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity5.29E-04
35GO:0008266: poly(U) RNA binding7.56E-04
36GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor8.60E-04
37GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity8.60E-04
38GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity8.60E-04
39GO:0050734: hydroxycinnamoyltransferase activity8.60E-04
40GO:0002161: aminoacyl-tRNA editing activity8.60E-04
41GO:0004148: dihydrolipoyl dehydrogenase activity8.60E-04
42GO:0004075: biotin carboxylase activity8.60E-04
43GO:0008097: 5S rRNA binding1.23E-03
44GO:0003878: ATP citrate synthase activity1.23E-03
45GO:0004550: nucleoside diphosphate kinase activity1.23E-03
46GO:0030570: pectate lyase activity1.48E-03
47GO:0004659: prenyltransferase activity1.64E-03
48GO:0004845: uracil phosphoribosyltransferase activity1.64E-03
49GO:0016836: hydro-lyase activity1.64E-03
50GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.64E-03
51GO:0010328: auxin influx transmembrane transporter activity1.64E-03
52GO:0043495: protein anchor1.64E-03
53GO:0004812: aminoacyl-tRNA ligase activity1.75E-03
54GO:0003729: mRNA binding1.83E-03
55GO:0004356: glutamate-ammonia ligase activity2.09E-03
56GO:0003989: acetyl-CoA carboxylase activity2.09E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor2.09E-03
58GO:0004791: thioredoxin-disulfide reductase activity2.18E-03
59GO:0008200: ion channel inhibitor activity2.57E-03
60GO:0016462: pyrophosphatase activity2.57E-03
61GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.85E-03
62GO:0051920: peroxiredoxin activity3.09E-03
63GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.09E-03
64GO:0004849: uridine kinase activity3.09E-03
65GO:0102391: decanoate--CoA ligase activity3.09E-03
66GO:0016722: oxidoreductase activity, oxidizing metal ions3.21E-03
67GO:0005200: structural constituent of cytoskeleton3.21E-03
68GO:0042803: protein homodimerization activity3.34E-03
69GO:0004427: inorganic diphosphatase activity3.64E-03
70GO:0019899: enzyme binding3.64E-03
71GO:0004467: long-chain fatty acid-CoA ligase activity3.64E-03
72GO:0016209: antioxidant activity4.23E-03
73GO:0004337: geranyltranstransferase activity5.48E-03
74GO:0008889: glycerophosphodiester phosphodiesterase activity5.48E-03
75GO:0003746: translation elongation factor activity5.96E-03
76GO:0047617: acyl-CoA hydrolase activity6.15E-03
77GO:0042802: identical protein binding6.58E-03
78GO:0004161: dimethylallyltranstransferase activity7.58E-03
79GO:0043621: protein self-association8.31E-03
80GO:0000049: tRNA binding8.33E-03
81GO:0016788: hydrolase activity, acting on ester bonds8.66E-03
82GO:0003723: RNA binding1.17E-02
83GO:0005528: FK506 binding1.25E-02
84GO:0052689: carboxylic ester hydrolase activity1.26E-02
85GO:0051087: chaperone binding1.34E-02
86GO:0019706: protein-cysteine S-palmitoyltransferase activity1.43E-02
87GO:0033612: receptor serine/threonine kinase binding1.43E-02
88GO:0016491: oxidoreductase activity1.46E-02
89GO:0022891: substrate-specific transmembrane transporter activity1.62E-02
90GO:0003727: single-stranded RNA binding1.72E-02
91GO:0008514: organic anion transmembrane transporter activity1.72E-02
92GO:0005507: copper ion binding1.74E-02
93GO:0047134: protein-disulfide reductase activity1.82E-02
94GO:0016829: lyase activity2.01E-02
95GO:0008080: N-acetyltransferase activity2.03E-02
96GO:0050662: coenzyme binding2.14E-02
97GO:0016762: xyloglucan:xyloglucosyl transferase activity2.36E-02
98GO:0008483: transaminase activity2.83E-02
99GO:0015250: water channel activity3.07E-02
100GO:0016168: chlorophyll binding3.19E-02
101GO:0016798: hydrolase activity, acting on glycosyl bonds3.45E-02
102GO:0008236: serine-type peptidase activity3.58E-02
103GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.58E-02
104GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.71E-02
105GO:0000287: magnesium ion binding3.89E-02
106GO:0046872: metal ion binding3.96E-02
107GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.11E-02
108GO:0003993: acid phosphatase activity4.53E-02
109GO:0016740: transferase activity4.76E-02
110GO:0050661: NADP binding4.81E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009570: chloroplast stroma2.71E-57
4GO:0009507: chloroplast7.51E-47
5GO:0009941: chloroplast envelope4.53E-45
6GO:0009579: thylakoid1.66E-27
7GO:0005840: ribosome1.42E-16
8GO:0031977: thylakoid lumen1.28E-13
9GO:0009535: chloroplast thylakoid membrane1.52E-13
10GO:0009543: chloroplast thylakoid lumen2.00E-11
11GO:0009534: chloroplast thylakoid2.68E-11
12GO:0048046: apoplast3.22E-07
13GO:0016020: membrane8.60E-06
14GO:0009536: plastid1.45E-05
15GO:0022626: cytosolic ribosome2.00E-05
16GO:0000311: plastid large ribosomal subunit2.63E-05
17GO:0009654: photosystem II oxygen evolving complex7.83E-05
18GO:0009547: plastid ribosome2.39E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.39E-04
20GO:0046658: anchored component of plasma membrane2.44E-04
21GO:0045298: tubulin complex3.23E-04
22GO:0031225: anchored component of membrane4.28E-04
23GO:0042651: thylakoid membrane1.14E-03
24GO:0009346: citrate lyase complex1.23E-03
25GO:0009505: plant-type cell wall1.25E-03
26GO:0015935: small ribosomal subunit1.25E-03
27GO:0055035: plastid thylakoid membrane2.09E-03
28GO:0005618: cell wall2.10E-03
29GO:0019898: extrinsic component of membrane2.34E-03
30GO:0010319: stromule3.21E-03
31GO:0009539: photosystem II reaction center4.84E-03
32GO:0015934: large ribosomal subunit5.43E-03
33GO:0005763: mitochondrial small ribosomal subunit5.48E-03
34GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.48E-03
35GO:0008180: COP9 signalosome5.48E-03
36GO:0030659: cytoplasmic vesicle membrane9.92E-03
37GO:0030095: chloroplast photosystem II9.92E-03
38GO:0000312: plastid small ribosomal subunit9.92E-03
39GO:0005874: microtubule1.06E-02
40GO:0005875: microtubule associated complex1.16E-02
41GO:0022625: cytosolic large ribosomal subunit1.19E-02
42GO:0009532: plastid stroma1.43E-02
43GO:0009706: chloroplast inner membrane1.48E-02
44GO:0005871: kinesin complex1.82E-02
45GO:0009523: photosystem II2.25E-02
46GO:0005759: mitochondrial matrix2.33E-02
47GO:0030529: intracellular ribonucleoprotein complex3.07E-02
48GO:0019005: SCF ubiquitin ligase complex3.71E-02
49GO:0009707: chloroplast outer membrane3.71E-02
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Gene type



Gene DE type