GO Enrichment Analysis of Co-expressed Genes with
AT5G06060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0098586: cellular response to virus | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 5 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 5.07E-10 |
| 7 | GO:0010021: amylopectin biosynthetic process | 1.67E-05 |
| 8 | GO:0015994: chlorophyll metabolic process | 1.67E-05 |
| 9 | GO:0015979: photosynthesis | 1.70E-05 |
| 10 | GO:0009644: response to high light intensity | 3.92E-05 |
| 11 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 4.09E-05 |
| 12 | GO:0019252: starch biosynthetic process | 8.23E-05 |
| 13 | GO:0043953: protein transport by the Tat complex | 1.44E-04 |
| 14 | GO:0051775: response to redox state | 1.44E-04 |
| 15 | GO:0071277: cellular response to calcium ion | 1.44E-04 |
| 16 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.44E-04 |
| 17 | GO:1904964: positive regulation of phytol biosynthetic process | 1.44E-04 |
| 18 | GO:0065002: intracellular protein transmembrane transport | 1.44E-04 |
| 19 | GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway | 1.44E-04 |
| 20 | GO:0000305: response to oxygen radical | 1.44E-04 |
| 21 | GO:0010206: photosystem II repair | 1.53E-04 |
| 22 | GO:0010205: photoinhibition | 1.84E-04 |
| 23 | GO:0018298: protein-chromophore linkage | 2.27E-04 |
| 24 | GO:0034755: iron ion transmembrane transport | 3.29E-04 |
| 25 | GO:0080005: photosystem stoichiometry adjustment | 3.29E-04 |
| 26 | GO:0016122: xanthophyll metabolic process | 3.29E-04 |
| 27 | GO:0046741: transport of virus in host, tissue to tissue | 3.29E-04 |
| 28 | GO:0009915: phloem sucrose loading | 3.29E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.29E-04 |
| 30 | GO:0010020: chloroplast fission | 3.77E-04 |
| 31 | GO:0006954: inflammatory response | 5.40E-04 |
| 32 | GO:0016050: vesicle organization | 5.40E-04 |
| 33 | GO:0031022: nuclear migration along microfilament | 5.40E-04 |
| 34 | GO:0043572: plastid fission | 7.73E-04 |
| 35 | GO:0010371: regulation of gibberellin biosynthetic process | 7.73E-04 |
| 36 | GO:0071484: cellular response to light intensity | 7.73E-04 |
| 37 | GO:0009152: purine ribonucleotide biosynthetic process | 7.73E-04 |
| 38 | GO:0046653: tetrahydrofolate metabolic process | 7.73E-04 |
| 39 | GO:0006107: oxaloacetate metabolic process | 7.73E-04 |
| 40 | GO:0080170: hydrogen peroxide transmembrane transport | 7.73E-04 |
| 41 | GO:0006749: glutathione metabolic process | 1.02E-03 |
| 42 | GO:0006734: NADH metabolic process | 1.02E-03 |
| 43 | GO:0009765: photosynthesis, light harvesting | 1.02E-03 |
| 44 | GO:0006109: regulation of carbohydrate metabolic process | 1.02E-03 |
| 45 | GO:0010117: photoprotection | 1.29E-03 |
| 46 | GO:0009904: chloroplast accumulation movement | 1.29E-03 |
| 47 | GO:0071805: potassium ion transmembrane transport | 1.59E-03 |
| 48 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.59E-03 |
| 49 | GO:0016554: cytidine to uridine editing | 1.59E-03 |
| 50 | GO:0010027: thylakoid membrane organization | 1.78E-03 |
| 51 | GO:0016126: sterol biosynthetic process | 1.78E-03 |
| 52 | GO:0009903: chloroplast avoidance movement | 1.91E-03 |
| 53 | GO:0010189: vitamin E biosynthetic process | 1.91E-03 |
| 54 | GO:0007623: circadian rhythm | 1.95E-03 |
| 55 | GO:0009645: response to low light intensity stimulus | 2.24E-03 |
| 56 | GO:0009395: phospholipid catabolic process | 2.24E-03 |
| 57 | GO:0030091: protein repair | 2.60E-03 |
| 58 | GO:0009704: de-etiolation | 2.60E-03 |
| 59 | GO:0016559: peroxisome fission | 2.60E-03 |
| 60 | GO:0048564: photosystem I assembly | 2.60E-03 |
| 61 | GO:0005978: glycogen biosynthetic process | 2.60E-03 |
| 62 | GO:0009642: response to light intensity | 2.60E-03 |
| 63 | GO:0034765: regulation of ion transmembrane transport | 3.35E-03 |
| 64 | GO:0090333: regulation of stomatal closure | 3.35E-03 |
| 65 | GO:0000373: Group II intron splicing | 3.35E-03 |
| 66 | GO:0005982: starch metabolic process | 3.76E-03 |
| 67 | GO:1900865: chloroplast RNA modification | 3.76E-03 |
| 68 | GO:0008285: negative regulation of cell proliferation | 4.61E-03 |
| 69 | GO:0043085: positive regulation of catalytic activity | 4.61E-03 |
| 70 | GO:0006879: cellular iron ion homeostasis | 4.61E-03 |
| 71 | GO:0016485: protein processing | 4.61E-03 |
| 72 | GO:0055085: transmembrane transport | 4.91E-03 |
| 73 | GO:0005983: starch catabolic process | 5.06E-03 |
| 74 | GO:0005975: carbohydrate metabolic process | 5.31E-03 |
| 75 | GO:0010628: positive regulation of gene expression | 5.52E-03 |
| 76 | GO:0006108: malate metabolic process | 5.52E-03 |
| 77 | GO:0010207: photosystem II assembly | 6.00E-03 |
| 78 | GO:0009266: response to temperature stimulus | 6.00E-03 |
| 79 | GO:0071732: cellular response to nitric oxide | 6.50E-03 |
| 80 | GO:0010025: wax biosynthetic process | 7.00E-03 |
| 81 | GO:0006833: water transport | 7.00E-03 |
| 82 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.06E-03 |
| 83 | GO:0010073: meristem maintenance | 8.06E-03 |
| 84 | GO:0051302: regulation of cell division | 8.06E-03 |
| 85 | GO:0008299: isoprenoid biosynthetic process | 8.06E-03 |
| 86 | GO:0035428: hexose transmembrane transport | 9.17E-03 |
| 87 | GO:0016226: iron-sulfur cluster assembly | 9.17E-03 |
| 88 | GO:0071369: cellular response to ethylene stimulus | 9.75E-03 |
| 89 | GO:0010227: floral organ abscission | 9.75E-03 |
| 90 | GO:0042391: regulation of membrane potential | 1.16E-02 |
| 91 | GO:0034220: ion transmembrane transport | 1.16E-02 |
| 92 | GO:0006662: glycerol ether metabolic process | 1.22E-02 |
| 93 | GO:0046323: glucose import | 1.22E-02 |
| 94 | GO:0048544: recognition of pollen | 1.28E-02 |
| 95 | GO:0007018: microtubule-based movement | 1.28E-02 |
| 96 | GO:0000302: response to reactive oxygen species | 1.41E-02 |
| 97 | GO:0071281: cellular response to iron ion | 1.55E-02 |
| 98 | GO:0030163: protein catabolic process | 1.55E-02 |
| 99 | GO:0009567: double fertilization forming a zygote and endosperm | 1.62E-02 |
| 100 | GO:0046686: response to cadmium ion | 1.94E-02 |
| 101 | GO:0042254: ribosome biogenesis | 1.97E-02 |
| 102 | GO:0000160: phosphorelay signal transduction system | 2.30E-02 |
| 103 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.48E-02 |
| 104 | GO:0055114: oxidation-reduction process | 2.53E-02 |
| 105 | GO:0009853: photorespiration | 2.63E-02 |
| 106 | GO:0034599: cellular response to oxidative stress | 2.71E-02 |
| 107 | GO:0006099: tricarboxylic acid cycle | 2.71E-02 |
| 108 | GO:0045454: cell redox homeostasis | 2.87E-02 |
| 109 | GO:0006631: fatty acid metabolic process | 2.97E-02 |
| 110 | GO:0006869: lipid transport | 3.14E-02 |
| 111 | GO:0009640: photomorphogenesis | 3.15E-02 |
| 112 | GO:0051707: response to other organism | 3.15E-02 |
| 113 | GO:0006855: drug transmembrane transport | 3.51E-02 |
| 114 | GO:0031347: regulation of defense response | 3.60E-02 |
| 115 | GO:0006979: response to oxidative stress | 3.69E-02 |
| 116 | GO:0006364: rRNA processing | 3.89E-02 |
| 117 | GO:0006813: potassium ion transport | 3.89E-02 |
| 118 | GO:0009736: cytokinin-activated signaling pathway | 3.89E-02 |
| 119 | GO:0008152: metabolic process | 3.89E-02 |
| 120 | GO:0006857: oligopeptide transport | 4.08E-02 |
| 121 | GO:0043086: negative regulation of catalytic activity | 4.38E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 2 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 3 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 4 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 5 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 6 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 7 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 8 | GO:0004506: squalene monooxygenase activity | 1.67E-05 |
| 9 | GO:0009011: starch synthase activity | 1.67E-05 |
| 10 | GO:0004176: ATP-dependent peptidase activity | 3.01E-05 |
| 11 | GO:0004856: xylulokinase activity | 1.44E-04 |
| 12 | GO:0019203: carbohydrate phosphatase activity | 1.44E-04 |
| 13 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.44E-04 |
| 14 | GO:0035671: enone reductase activity | 1.44E-04 |
| 15 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.44E-04 |
| 16 | GO:0050308: sugar-phosphatase activity | 1.44E-04 |
| 17 | GO:0016168: chlorophyll binding | 1.69E-04 |
| 18 | GO:0004222: metalloendopeptidase activity | 2.60E-04 |
| 19 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.29E-04 |
| 20 | GO:0004362: glutathione-disulfide reductase activity | 3.29E-04 |
| 21 | GO:0047746: chlorophyllase activity | 3.29E-04 |
| 22 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.29E-04 |
| 23 | GO:0033201: alpha-1,4-glucan synthase activity | 3.29E-04 |
| 24 | GO:0042802: identical protein binding | 4.25E-04 |
| 25 | GO:0008253: 5'-nucleotidase activity | 5.40E-04 |
| 26 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 5.40E-04 |
| 27 | GO:0070402: NADPH binding | 5.40E-04 |
| 28 | GO:0008864: formyltetrahydrofolate deformylase activity | 5.40E-04 |
| 29 | GO:0043169: cation binding | 5.40E-04 |
| 30 | GO:0004373: glycogen (starch) synthase activity | 5.40E-04 |
| 31 | GO:0022891: substrate-specific transmembrane transporter activity | 7.50E-04 |
| 32 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 7.73E-04 |
| 33 | GO:0043495: protein anchor | 1.02E-03 |
| 34 | GO:0016853: isomerase activity | 1.09E-03 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.29E-03 |
| 36 | GO:0035673: oligopeptide transmembrane transporter activity | 1.59E-03 |
| 37 | GO:0008237: metallopeptidase activity | 1.59E-03 |
| 38 | GO:0042578: phosphoric ester hydrolase activity | 1.59E-03 |
| 39 | GO:0016615: malate dehydrogenase activity | 1.59E-03 |
| 40 | GO:2001070: starch binding | 1.59E-03 |
| 41 | GO:0030060: L-malate dehydrogenase activity | 1.91E-03 |
| 42 | GO:0005242: inward rectifier potassium channel activity | 1.91E-03 |
| 43 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.91E-03 |
| 44 | GO:0019899: enzyme binding | 2.24E-03 |
| 45 | GO:0043022: ribosome binding | 2.60E-03 |
| 46 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.35E-03 |
| 47 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.35E-03 |
| 48 | GO:0005381: iron ion transmembrane transporter activity | 3.76E-03 |
| 49 | GO:0050660: flavin adenine dinucleotide binding | 4.07E-03 |
| 50 | GO:0008047: enzyme activator activity | 4.18E-03 |
| 51 | GO:0015198: oligopeptide transporter activity | 5.06E-03 |
| 52 | GO:0004565: beta-galactosidase activity | 5.52E-03 |
| 53 | GO:0031409: pigment binding | 7.00E-03 |
| 54 | GO:0051536: iron-sulfur cluster binding | 7.52E-03 |
| 55 | GO:0004857: enzyme inhibitor activity | 7.52E-03 |
| 56 | GO:0015079: potassium ion transmembrane transporter activity | 8.06E-03 |
| 57 | GO:0047134: protein-disulfide reductase activity | 1.09E-02 |
| 58 | GO:0005249: voltage-gated potassium channel activity | 1.16E-02 |
| 59 | GO:0030551: cyclic nucleotide binding | 1.16E-02 |
| 60 | GO:0016887: ATPase activity | 1.27E-02 |
| 61 | GO:0005355: glucose transmembrane transporter activity | 1.28E-02 |
| 62 | GO:0004791: thioredoxin-disulfide reductase activity | 1.28E-02 |
| 63 | GO:0008017: microtubule binding | 1.30E-02 |
| 64 | GO:0004518: nuclease activity | 1.48E-02 |
| 65 | GO:0000156: phosphorelay response regulator activity | 1.55E-02 |
| 66 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.55E-02 |
| 67 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.58E-02 |
| 68 | GO:0008483: transaminase activity | 1.69E-02 |
| 69 | GO:0015250: water channel activity | 1.84E-02 |
| 70 | GO:0015238: drug transmembrane transporter activity | 2.30E-02 |
| 71 | GO:0008233: peptidase activity | 2.35E-02 |
| 72 | GO:0030145: manganese ion binding | 2.46E-02 |
| 73 | GO:0003993: acid phosphatase activity | 2.71E-02 |
| 74 | GO:0050661: NADP binding | 2.88E-02 |
| 75 | GO:0016787: hydrolase activity | 3.10E-02 |
| 76 | GO:0005198: structural molecule activity | 3.42E-02 |
| 77 | GO:0031625: ubiquitin protein ligase binding | 4.18E-02 |
| 78 | GO:0003777: microtubule motor activity | 4.18E-02 |
| 79 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.68E-02 |
| 80 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.69E-36 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 2.19E-20 |
| 5 | GO:0009534: chloroplast thylakoid | 1.34E-17 |
| 6 | GO:0009570: chloroplast stroma | 2.44E-12 |
| 7 | GO:0009941: chloroplast envelope | 1.62E-11 |
| 8 | GO:0009579: thylakoid | 2.02E-08 |
| 9 | GO:0010287: plastoglobule | 1.17E-05 |
| 10 | GO:0009501: amyloplast | 9.94E-05 |
| 11 | GO:0031361: integral component of thylakoid membrane | 1.44E-04 |
| 12 | GO:0009782: photosystem I antenna complex | 1.44E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.53E-04 |
| 14 | GO:0033281: TAT protein transport complex | 5.40E-04 |
| 15 | GO:0009523: photosystem II | 1.16E-03 |
| 16 | GO:0016021: integral component of membrane | 2.00E-03 |
| 17 | GO:0009707: chloroplast outer membrane | 2.31E-03 |
| 18 | GO:0031977: thylakoid lumen | 3.46E-03 |
| 19 | GO:0031969: chloroplast membrane | 4.45E-03 |
| 20 | GO:0009508: plastid chromosome | 5.52E-03 |
| 21 | GO:0030076: light-harvesting complex | 6.50E-03 |
| 22 | GO:0009706: chloroplast inner membrane | 7.18E-03 |
| 23 | GO:0042651: thylakoid membrane | 8.06E-03 |
| 24 | GO:0009654: photosystem II oxygen evolving complex | 8.06E-03 |
| 25 | GO:0009543: chloroplast thylakoid lumen | 8.99E-03 |
| 26 | GO:0005623: cell | 9.23E-03 |
| 27 | GO:0005887: integral component of plasma membrane | 1.08E-02 |
| 28 | GO:0005871: kinesin complex | 1.09E-02 |
| 29 | GO:0019898: extrinsic component of membrane | 1.35E-02 |
| 30 | GO:0010319: stromule | 1.69E-02 |
| 31 | GO:0009295: nucleoid | 1.69E-02 |
| 32 | GO:0000151: ubiquitin ligase complex | 2.22E-02 |
| 33 | GO:0048046: apoplast | 2.39E-02 |