co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G05890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
5	GO:0010027: thylakoid membrane organization	1.67E-06
6	GO:0090391: granum assembly	1.13E-05
7	GO:0009773: photosynthetic electron transport in photosystem I	2.55E-05
8	GO:0016120: carotene biosynthetic process	7.32E-05
9	GO:0006655: phosphatidylglycerol biosynthetic process	1.07E-04
10	GO:0042549: photosystem II stabilization	1.07E-04
11	GO:1901259: chloroplast rRNA processing	1.47E-04
12	GO:0010196: nonphotochemical quenching	1.93E-04
13	GO:0043953: protein transport by the Tat complex	2.60E-04
14	GO:1904966: positive regulation of vitamin E biosynthetic process	2.60E-04
15	GO:1904964: positive regulation of phytol biosynthetic process	2.60E-04
16	GO:0065002: intracellular protein transmembrane transport	2.60E-04
17	GO:0043686: co-translational protein modification	2.60E-04
18	GO:0034337: RNA folding	2.60E-04
19	GO:0000305: response to oxygen radical	2.60E-04
20	GO:0000373: Group II intron splicing	3.65E-04
21	GO:0009915: phloem sucrose loading	5.74E-04
22	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.74E-04
23	GO:0035304: regulation of protein dephosphorylation	5.74E-04
24	GO:0080005: photosystem stoichiometry adjustment	5.74E-04
25	GO:0010115: regulation of abscisic acid biosynthetic process	5.74E-04
26	GO:0016122: xanthophyll metabolic process	5.74E-04
27	GO:0006729: tetrahydrobiopterin biosynthetic process	5.74E-04
28	GO:0010289: homogalacturonan biosynthetic process	5.74E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.74E-04
30	GO:0016024: CDP-diacylglycerol biosynthetic process	6.67E-04
31	GO:0015979: photosynthesis	7.69E-04
32	GO:0010207: photosystem II assembly	8.52E-04
33	GO:0031022: nuclear migration along microfilament	9.31E-04
34	GO:1902448: positive regulation of shade avoidance	9.31E-04
35	GO:0006954: inflammatory response	9.31E-04
36	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	9.31E-04
37	GO:0051604: protein maturation	9.31E-04
38	GO:0006833: water transport	1.05E-03
39	GO:0055114: oxidation-reduction process	1.11E-03
40	GO:0080170: hydrogen peroxide transmembrane transport	1.33E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.33E-03
42	GO:0010371: regulation of gibberellin biosynthetic process	1.33E-03
43	GO:0009152: purine ribonucleotide biosynthetic process	1.33E-03
44	GO:0046653: tetrahydrofolate metabolic process	1.33E-03
45	GO:0010239: chloroplast mRNA processing	1.33E-03
46	GO:0055085: transmembrane transport	1.36E-03
47	GO:0045727: positive regulation of translation	1.78E-03
48	GO:0015994: chlorophyll metabolic process	1.78E-03
49	GO:0006749: glutathione metabolic process	1.78E-03
50	GO:0010021: amylopectin biosynthetic process	1.78E-03
51	GO:0010109: regulation of photosynthesis	1.78E-03
52	GO:0009765: photosynthesis, light harvesting	1.78E-03
53	GO:0006109: regulation of carbohydrate metabolic process	1.78E-03
54	GO:0006364: rRNA processing	1.81E-03
55	GO:0009658: chloroplast organization	2.06E-03
56	GO:0034220: ion transmembrane transport	2.13E-03
57	GO:0032957: inositol trisphosphate metabolic process	2.27E-03
58	GO:0009904: chloroplast accumulation movement	2.27E-03
59	GO:0045038: protein import into chloroplast thylakoid membrane	2.27E-03
60	GO:0031365: N-terminal protein amino acid modification	2.27E-03
61	GO:0016554: cytidine to uridine editing	2.80E-03
62	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.80E-03
63	GO:0006561: proline biosynthetic process	2.80E-03
64	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.80E-03
65	GO:0000470: maturation of LSU-rRNA	2.80E-03
66	GO:0048280: vesicle fusion with Golgi apparatus	3.36E-03
67	GO:0009903: chloroplast avoidance movement	3.36E-03
68	GO:0010189: vitamin E biosynthetic process	3.36E-03
69	GO:0009611: response to wounding	3.43E-03
70	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.97E-03
71	GO:1900057: positive regulation of leaf senescence	3.97E-03
72	GO:0006400: tRNA modification	3.97E-03
73	GO:0015693: magnesium ion transport	3.97E-03
74	GO:0009395: phospholipid catabolic process	3.97E-03
75	GO:0008610: lipid biosynthetic process	4.60E-03
76	GO:0009642: response to light intensity	4.60E-03
77	GO:0030091: protein repair	4.60E-03
78	GO:0006353: DNA-templated transcription, termination	4.60E-03
79	GO:0006605: protein targeting	4.60E-03
80	GO:0016559: peroxisome fission	4.60E-03
81	GO:0032544: plastid translation	5.27E-03
82	GO:0018298: protein-chromophore linkage	5.32E-03
83	GO:0007623: circadian rhythm	5.68E-03
84	GO:0009245: lipid A biosynthetic process	5.98E-03
85	GO:0006098: pentose-phosphate shunt	5.98E-03
86	GO:0098656: anion transmembrane transport	5.98E-03
87	GO:1900865: chloroplast RNA modification	6.71E-03
88	GO:0010205: photoinhibition	6.71E-03
89	GO:0006810: transport	7.30E-03
90	GO:0006896: Golgi to vacuole transport	7.47E-03
91	GO:0009688: abscisic acid biosynthetic process	7.47E-03
92	GO:0005975: carbohydrate metabolic process	7.78E-03
93	GO:0019684: photosynthesis, light reaction	8.27E-03
94	GO:0008285: negative regulation of cell proliferation	8.27E-03
95	GO:0009073: aromatic amino acid family biosynthetic process	8.27E-03
96	GO:0043085: positive regulation of catalytic activity	8.27E-03
97	GO:1903507: negative regulation of nucleic acid-templated transcription	8.27E-03
98	GO:0009750: response to fructose	8.27E-03
99	GO:0010152: pollen maturation	9.09E-03
100	GO:0009644: response to high light intensity	9.42E-03
101	GO:0010628: positive regulation of gene expression	9.94E-03
102	GO:0009718: anthocyanin-containing compound biosynthetic process	9.94E-03
103	GO:0006094: gluconeogenesis	9.94E-03
104	GO:0031347: regulation of defense response	1.06E-02
105	GO:0010020: chloroplast fission	1.08E-02
106	GO:0009266: response to temperature stimulus	1.08E-02
107	GO:0006857: oligopeptide transport	1.26E-02
108	GO:0010025: wax biosynthetic process	1.27E-02
109	GO:0006096: glycolytic process	1.39E-02
110	GO:0008299: isoprenoid biosynthetic process	1.46E-02
111	GO:0009695: jasmonic acid biosynthetic process	1.46E-02
112	GO:0010073: meristem maintenance	1.46E-02
113	GO:0031408: oxylipin biosynthetic process	1.56E-02
114	GO:0016998: cell wall macromolecule catabolic process	1.56E-02
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.67E-02
116	GO:0010227: floral organ abscission	1.77E-02
117	GO:0006869: lipid transport	1.84E-02
118	GO:0048443: stamen development	1.88E-02
119	GO:0042147: retrograde transport, endosome to Golgi	1.99E-02
120	GO:0016117: carotenoid biosynthetic process	1.99E-02
121	GO:0000413: protein peptidyl-prolyl isomerization	2.11E-02
122	GO:0006662: glycerol ether metabolic process	2.22E-02
123	GO:0010182: sugar mediated signaling pathway	2.22E-02
124	GO:0007018: microtubule-based movement	2.34E-02
125	GO:0009646: response to absence of light	2.34E-02
126	GO:0008152: metabolic process	2.41E-02
127	GO:0006623: protein targeting to vacuole	2.46E-02
128	GO:0019252: starch biosynthetic process	2.46E-02
129	GO:0006891: intra-Golgi vesicle-mediated transport	2.58E-02
130	GO:0019761: glucosinolate biosynthetic process	2.70E-02
131	GO:0010090: trichome morphogenesis	2.83E-02
132	GO:0009567: double fertilization forming a zygote and endosperm	2.96E-02
133	GO:0001666: response to hypoxia	3.35E-02
134	GO:0016126: sterol biosynthetic process	3.35E-02
135	GO:0042128: nitrate assimilation	3.63E-02
136	GO:0015995: chlorophyll biosynthetic process	3.77E-02
137	GO:0006888: ER to Golgi vesicle-mediated transport	3.77E-02
138	GO:0010411: xyloglucan metabolic process	3.77E-02
139	GO:0009735: response to cytokinin	3.90E-02
140	GO:0010311: lateral root formation	4.20E-02
141	GO:0000160: phosphorelay signal transduction system	4.20E-02
142	GO:0009416: response to light stimulus	4.35E-02
143	GO:0016051: carbohydrate biosynthetic process	4.79E-02
144	GO:0009853: photorespiration	4.79E-02
145	GO:0034599: cellular response to oxidative stress	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
3	GO:0009976: tocopherol cyclase activity	0.00E+00
4	GO:0038198: auxin receptor activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
7	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
8	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0045436: lycopene beta cyclase activity	0.00E+00
11	GO:0010242: oxygen evolving activity	2.60E-04
12	GO:0004856: xylulokinase activity	2.60E-04
13	GO:0042586: peptide deformylase activity	2.60E-04
14	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.60E-04
15	GO:0004321: fatty-acyl-CoA synthase activity	2.60E-04
16	GO:0005080: protein kinase C binding	2.60E-04
17	GO:0035671: enone reductase activity	2.60E-04
18	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.60E-04
19	GO:0000822: inositol hexakisphosphate binding	5.74E-04
20	GO:0004362: glutathione-disulfide reductase activity	5.74E-04
21	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.74E-04
22	GO:0033201: alpha-1,4-glucan synthase activity	5.74E-04
23	GO:0019843: rRNA binding	6.55E-04
24	GO:0004565: beta-galactosidase activity	7.57E-04
25	GO:0004022: alcohol dehydrogenase (NAD) activity	7.57E-04
26	GO:0008266: poly(U) RNA binding	8.52E-04
27	GO:0004373: glycogen (starch) synthase activity	9.31E-04
28	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	9.31E-04
29	GO:0004751: ribose-5-phosphate isomerase activity	9.31E-04
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.31E-04
31	GO:0070402: NADPH binding	9.31E-04
32	GO:0008864: formyltetrahydrofolate deformylase activity	9.31E-04
33	GO:0047325: inositol tetrakisphosphate 1-kinase activity	9.31E-04
34	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.31E-04
35	GO:0005528: FK506 binding	1.17E-03
36	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.33E-03
37	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.33E-03
38	GO:0001872: (1->3)-beta-D-glucan binding	1.33E-03
39	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.51E-03
40	GO:0022891: substrate-specific transmembrane transporter activity	1.68E-03
41	GO:0004045: aminoacyl-tRNA hydrolase activity	1.78E-03
42	GO:0080032: methyl jasmonate esterase activity	1.78E-03
43	GO:0004506: squalene monooxygenase activity	1.78E-03
44	GO:0043495: protein anchor	1.78E-03
45	GO:0009011: starch synthase activity	1.78E-03
46	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.78E-03
47	GO:0010011: auxin binding	1.78E-03
48	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.78E-03
49	GO:0016788: hydrolase activity, acting on ester bonds	2.12E-03
50	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.27E-03
51	GO:0016853: isomerase activity	2.47E-03
52	GO:0035673: oligopeptide transmembrane transporter activity	2.80E-03
53	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.80E-03
54	GO:0042578: phosphoric ester hydrolase activity	2.80E-03
55	GO:0031177: phosphopantetheine binding	2.80E-03
56	GO:0080030: methyl indole-3-acetate esterase activity	2.80E-03
57	GO:0004332: fructose-bisphosphate aldolase activity	2.80E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.36E-03
59	GO:0000035: acyl binding	3.36E-03
60	GO:0019899: enzyme binding	3.97E-03
61	GO:0004620: phospholipase activity	3.97E-03
62	GO:0015250: water channel activity	4.08E-03
63	GO:0003824: catalytic activity	4.12E-03
64	GO:0016168: chlorophyll binding	4.32E-03
65	GO:0008312: 7S RNA binding	4.60E-03
66	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.60E-03
67	GO:0043022: ribosome binding	4.60E-03
68	GO:0016491: oxidoreductase activity	5.89E-03
69	GO:0016207: 4-coumarate-CoA ligase activity	5.98E-03
70	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.98E-03
71	GO:0008047: enzyme activator activity	7.47E-03
72	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.71E-03
73	GO:0042802: identical protein binding	7.71E-03
74	GO:0005525: GTP binding	7.87E-03
75	GO:0047372: acylglycerol lipase activity	8.27E-03
76	GO:0015198: oligopeptide transporter activity	9.09E-03
77	GO:0000287: magnesium ion binding	9.68E-03
78	GO:0005315: inorganic phosphate transmembrane transporter activity	9.94E-03
79	GO:0015095: magnesium ion transmembrane transporter activity	9.94E-03
80	GO:0009982: pseudouridine synthase activity	9.94E-03
81	GO:0003714: transcription corepressor activity	1.36E-02
82	GO:0004857: enzyme inhibitor activity	1.36E-02
83	GO:0043424: protein histidine kinase binding	1.46E-02
84	GO:0004176: ATP-dependent peptidase activity	1.56E-02
85	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.67E-02
86	GO:0047134: protein-disulfide reductase activity	1.99E-02
87	GO:0003924: GTPase activity	2.13E-02
88	GO:0010181: FMN binding	2.34E-02
89	GO:0050662: coenzyme binding	2.34E-02
90	GO:0004791: thioredoxin-disulfide reductase activity	2.34E-02
91	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.58E-02
92	GO:0000156: phosphorelay response regulator activity	2.83E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.83E-02
94	GO:0008017: microtubule binding	3.04E-02
95	GO:0008483: transaminase activity	3.09E-02
96	GO:0016597: amino acid binding	3.22E-02
97	GO:0051213: dioxygenase activity	3.35E-02
98	GO:0030247: polysaccharide binding	3.77E-02
99	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.77E-02
100	GO:0008236: serine-type peptidase activity	3.91E-02
101	GO:0005215: transporter activity	4.07E-02
102	GO:0016787: hydrolase activity	4.08E-02
103	GO:0008168: methyltransferase activity	4.31E-02
104	GO:0030145: manganese ion binding	4.49E-02
105	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.79E-02
106	GO:0003746: translation elongation factor activity	4.79E-02
107	GO:0003993: acid phosphatase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	1.63E-41
5	GO:0009535: chloroplast thylakoid membrane	2.26E-17
6	GO:0009570: chloroplast stroma	3.40E-17
7	GO:0009534: chloroplast thylakoid	4.22E-12
8	GO:0009941: chloroplast envelope	2.27E-09
9	GO:0009579: thylakoid	1.08E-07
10	GO:0009543: chloroplast thylakoid lumen	4.91E-07
11	GO:0010287: plastoglobule	8.17E-05
12	GO:0031977: thylakoid lumen	1.37E-04
13	GO:0031361: integral component of thylakoid membrane	2.60E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.65E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	5.74E-04
16	GO:0031969: chloroplast membrane	6.09E-04
17	GO:0033281: TAT protein transport complex	9.31E-04
18	GO:0009654: photosystem II oxygen evolving complex	1.28E-03
19	GO:0009526: plastid envelope	1.78E-03
20	GO:0055035: plastid thylakoid membrane	2.27E-03
21	GO:0009523: photosystem II	2.64E-03
22	GO:0019898: extrinsic component of membrane	2.64E-03
23	GO:0009533: chloroplast stromal thylakoid	3.97E-03
24	GO:0030529: intracellular ribonucleoprotein complex	4.08E-03
25	GO:0012507: ER to Golgi transport vesicle membrane	4.60E-03
26	GO:0009501: amyloplast	4.60E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.27E-03
28	GO:0019005: SCF ubiquitin ligase complex	5.32E-03
29	GO:0008180: COP9 signalosome	5.98E-03
30	GO:0046658: anchored component of plasma membrane	8.12E-03
31	GO:0032040: small-subunit processome	9.09E-03
32	GO:0030095: chloroplast photosystem II	1.08E-02
33	GO:0042651: thylakoid membrane	1.46E-02
34	GO:0009536: plastid	1.61E-02
35	GO:0009706: chloroplast inner membrane	1.68E-02
36	GO:0005871: kinesin complex	1.99E-02
37	GO:0005623: cell	2.16E-02
38	GO:0010319: stromule	3.09E-02
39	GO:0005887: integral component of plasma membrane	3.13E-02
40	GO:0009707: chloroplast outer membrane	4.05E-02
41	GO:0000151: ubiquitin ligase complex	4.05E-02
42	GO:0048046: apoplast	4.06E-02