GO Enrichment Analysis of Co-expressed Genes with
AT5G04440
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019284: L-methionine salvage from S-adenosylmethionine | 0.00E+00 |
| 2 | GO:0019685: photosynthesis, dark reaction | 0.00E+00 |
| 3 | GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0071482: cellular response to light stimulus | 1.17E-05 |
| 6 | GO:0080093: regulation of photorespiration | 3.12E-05 |
| 7 | GO:0031998: regulation of fatty acid beta-oxidation | 3.12E-05 |
| 8 | GO:1902265: abscisic acid homeostasis | 3.12E-05 |
| 9 | GO:0005977: glycogen metabolic process | 1.37E-04 |
| 10 | GO:0006011: UDP-glucose metabolic process | 1.37E-04 |
| 11 | GO:0031022: nuclear migration along microfilament | 1.37E-04 |
| 12 | GO:0070828: heterochromatin organization | 1.37E-04 |
| 13 | GO:2001141: regulation of RNA biosynthetic process | 2.04E-04 |
| 14 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 2.04E-04 |
| 15 | GO:0006546: glycine catabolic process | 2.76E-04 |
| 16 | GO:0009902: chloroplast relocation | 2.76E-04 |
| 17 | GO:0048442: sepal development | 2.76E-04 |
| 18 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.76E-04 |
| 19 | GO:0006097: glyoxylate cycle | 3.53E-04 |
| 20 | GO:0009247: glycolipid biosynthetic process | 3.53E-04 |
| 21 | GO:0016120: carotene biosynthetic process | 3.53E-04 |
| 22 | GO:0043097: pyrimidine nucleoside salvage | 3.53E-04 |
| 23 | GO:0009853: photorespiration | 4.20E-04 |
| 24 | GO:0010942: positive regulation of cell death | 4.34E-04 |
| 25 | GO:0006206: pyrimidine nucleobase metabolic process | 4.34E-04 |
| 26 | GO:0010076: maintenance of floral meristem identity | 5.20E-04 |
| 27 | GO:0006458: 'de novo' protein folding | 5.20E-04 |
| 28 | GO:0009903: chloroplast avoidance movement | 5.20E-04 |
| 29 | GO:0009854: oxidative photosynthetic carbon pathway | 5.20E-04 |
| 30 | GO:0019509: L-methionine salvage from methylthioadenosine | 5.20E-04 |
| 31 | GO:0042026: protein refolding | 5.20E-04 |
| 32 | GO:0019375: galactolipid biosynthetic process | 6.99E-04 |
| 33 | GO:0009704: de-etiolation | 6.99E-04 |
| 34 | GO:0052543: callose deposition in cell wall | 6.99E-04 |
| 35 | GO:0048564: photosystem I assembly | 6.99E-04 |
| 36 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 6.99E-04 |
| 37 | GO:0009657: plastid organization | 7.94E-04 |
| 38 | GO:0009056: catabolic process | 8.92E-04 |
| 39 | GO:0046686: response to cadmium ion | 8.95E-04 |
| 40 | GO:0031425: chloroplast RNA processing | 9.92E-04 |
| 41 | GO:0048441: petal development | 1.10E-03 |
| 42 | GO:0006352: DNA-templated transcription, initiation | 1.20E-03 |
| 43 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.20E-03 |
| 44 | GO:0006415: translational termination | 1.20E-03 |
| 45 | GO:0010152: pollen maturation | 1.31E-03 |
| 46 | GO:0030048: actin filament-based movement | 1.43E-03 |
| 47 | GO:0006108: malate metabolic process | 1.43E-03 |
| 48 | GO:0005986: sucrose biosynthetic process | 1.43E-03 |
| 49 | GO:0048440: carpel development | 1.55E-03 |
| 50 | GO:0019253: reductive pentose-phosphate cycle | 1.55E-03 |
| 51 | GO:0042343: indole glucosinolate metabolic process | 1.67E-03 |
| 52 | GO:0098542: defense response to other organism | 2.19E-03 |
| 53 | GO:0061077: chaperone-mediated protein folding | 2.19E-03 |
| 54 | GO:0016226: iron-sulfur cluster assembly | 2.32E-03 |
| 55 | GO:0009658: chloroplast organization | 2.59E-03 |
| 56 | GO:0048443: stamen development | 2.61E-03 |
| 57 | GO:0016117: carotenoid biosynthetic process | 2.75E-03 |
| 58 | GO:0055114: oxidation-reduction process | 2.90E-03 |
| 59 | GO:0042631: cellular response to water deprivation | 2.90E-03 |
| 60 | GO:0006342: chromatin silencing | 3.05E-03 |
| 61 | GO:0009556: microsporogenesis | 3.36E-03 |
| 62 | GO:0000302: response to reactive oxygen species | 3.51E-03 |
| 63 | GO:0030163: protein catabolic process | 3.84E-03 |
| 64 | GO:0010027: thylakoid membrane organization | 4.52E-03 |
| 65 | GO:0010029: regulation of seed germination | 4.69E-03 |
| 66 | GO:0009637: response to blue light | 6.38E-03 |
| 67 | GO:0006099: tricarboxylic acid cycle | 6.58E-03 |
| 68 | GO:0009735: response to cytokinin | 7.61E-03 |
| 69 | GO:0000165: MAPK cascade | 8.68E-03 |
| 70 | GO:0006417: regulation of translation | 1.01E-02 |
| 71 | GO:0006457: protein folding | 1.08E-02 |
| 72 | GO:0006396: RNA processing | 1.22E-02 |
| 73 | GO:0009742: brassinosteroid mediated signaling pathway | 1.25E-02 |
| 74 | GO:0009058: biosynthetic process | 1.46E-02 |
| 75 | GO:0009790: embryo development | 1.57E-02 |
| 76 | GO:0006633: fatty acid biosynthetic process | 1.65E-02 |
| 77 | GO:0007166: cell surface receptor signaling pathway | 1.94E-02 |
| 78 | GO:0010468: regulation of gene expression | 2.00E-02 |
| 79 | GO:0045944: positive regulation of transcription from RNA polymerase II promoter | 2.28E-02 |
| 80 | GO:0009409: response to cold | 2.29E-02 |
| 81 | GO:0006810: transport | 2.49E-02 |
| 82 | GO:0006970: response to osmotic stress | 2.54E-02 |
| 83 | GO:0080167: response to karrikin | 2.81E-02 |
| 84 | GO:0044550: secondary metabolite biosynthetic process | 2.98E-02 |
| 85 | GO:0032259: methylation | 3.59E-02 |
| 86 | GO:0006468: protein phosphorylation | 3.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046570: methylthioribulose 1-phosphate dehydratase activity | 0.00E+00 |
| 2 | GO:0043874: acireductone synthase activity | 0.00E+00 |
| 3 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 4 | GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity | 0.00E+00 |
| 5 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 6 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 7 | GO:0016719: carotene 7,8-desaturase activity | 0.00E+00 |
| 8 | GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity | 0.00E+00 |
| 9 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 10 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.12E-05 |
| 11 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.88E-05 |
| 12 | GO:0050307: sucrose-phosphate phosphatase activity | 1.37E-04 |
| 13 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 1.37E-04 |
| 14 | GO:0032947: protein complex scaffold | 1.37E-04 |
| 15 | GO:0048038: quinone binding | 1.72E-04 |
| 16 | GO:0035250: UDP-galactosyltransferase activity | 2.04E-04 |
| 17 | GO:0016149: translation release factor activity, codon specific | 2.04E-04 |
| 18 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 2.04E-04 |
| 19 | GO:0001053: plastid sigma factor activity | 2.76E-04 |
| 20 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.76E-04 |
| 21 | GO:0008453: alanine-glyoxylate transaminase activity | 2.76E-04 |
| 22 | GO:0016987: sigma factor activity | 2.76E-04 |
| 23 | GO:0016615: malate dehydrogenase activity | 4.34E-04 |
| 24 | GO:0004849: uridine kinase activity | 5.20E-04 |
| 25 | GO:0030060: L-malate dehydrogenase activity | 5.20E-04 |
| 26 | GO:0043022: ribosome binding | 6.99E-04 |
| 27 | GO:0004033: aldo-keto reductase (NADP) activity | 6.99E-04 |
| 28 | GO:0003747: translation release factor activity | 8.92E-04 |
| 29 | GO:0044183: protein binding involved in protein folding | 1.20E-03 |
| 30 | GO:0008266: poly(U) RNA binding | 1.55E-03 |
| 31 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.79E-03 |
| 32 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.79E-03 |
| 33 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.79E-03 |
| 34 | GO:0051536: iron-sulfur cluster binding | 1.92E-03 |
| 35 | GO:0033612: receptor serine/threonine kinase binding | 2.19E-03 |
| 36 | GO:0000287: magnesium ion binding | 2.54E-03 |
| 37 | GO:0016491: oxidoreductase activity | 4.02E-03 |
| 38 | GO:0003746: translation elongation factor activity | 6.38E-03 |
| 39 | GO:0005198: structural molecule activity | 8.24E-03 |
| 40 | GO:0051287: NAD binding | 8.68E-03 |
| 41 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 9.36E-03 |
| 42 | GO:0051082: unfolded protein binding | 1.20E-02 |
| 43 | GO:0016746: transferase activity, transferring acyl groups | 1.22E-02 |
| 44 | GO:0005525: GTP binding | 1.37E-02 |
| 45 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.54E-02 |
| 46 | GO:0005506: iron ion binding | 1.66E-02 |
| 47 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.68E-02 |
| 48 | GO:0008194: UDP-glycosyltransferase activity | 1.91E-02 |
| 49 | GO:0008168: methyltransferase activity | 2.34E-02 |
| 50 | GO:0046982: protein heterodimerization activity | 2.38E-02 |
| 51 | GO:0004672: protein kinase activity | 2.49E-02 |
| 52 | GO:0003682: chromatin binding | 2.51E-02 |
| 53 | GO:0008233: peptidase activity | 2.77E-02 |
| 54 | GO:0052689: carboxylic ester hydrolase activity | 3.02E-02 |
| 55 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 3.37E-02 |
| 56 | GO:0016787: hydrolase activity | 3.63E-02 |
| 57 | GO:0008289: lipid binding | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042579: microbody | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 7.04E-15 |
| 3 | GO:0009570: chloroplast stroma | 7.63E-08 |
| 4 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.48E-05 |
| 5 | GO:0009941: chloroplast envelope | 3.13E-05 |
| 6 | GO:0000792: heterochromatin | 7.88E-05 |
| 7 | GO:0009509: chromoplast | 1.37E-04 |
| 8 | GO:0005960: glycine cleavage complex | 2.04E-04 |
| 9 | GO:0048046: apoplast | 6.78E-04 |
| 10 | GO:0005777: peroxisome | 1.39E-03 |
| 11 | GO:0019013: viral nucleocapsid | 1.43E-03 |
| 12 | GO:0000790: nuclear chromatin | 2.75E-03 |
| 13 | GO:0010319: stromule | 4.17E-03 |
| 14 | GO:0000786: nucleosome | 6.18E-03 |
| 15 | GO:0009535: chloroplast thylakoid membrane | 7.87E-03 |
| 16 | GO:0005829: cytosol | 1.19E-02 |
| 17 | GO:0009706: chloroplast inner membrane | 1.20E-02 |
| 18 | GO:0010287: plastoglobule | 1.35E-02 |
| 19 | GO:0005623: cell | 1.43E-02 |
| 20 | GO:0005886: plasma membrane | 3.20E-02 |