co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
4	GO:0015994: chlorophyll metabolic process	1.32E-06
5	GO:0010027: thylakoid membrane organization	7.22E-06
6	GO:0065002: intracellular protein transmembrane transport	3.25E-05
7	GO:0006106: fumarate metabolic process	3.25E-05
8	GO:0010028: xanthophyll cycle	3.25E-05
9	GO:0043953: protein transport by the Tat complex	3.25E-05
10	GO:0016122: xanthophyll metabolic process	8.18E-05
11	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.18E-05
12	GO:0016050: vesicle organization	1.42E-04
13	GO:1902448: positive regulation of shade avoidance	1.42E-04
14	GO:0006000: fructose metabolic process	1.42E-04
15	GO:0010021: amylopectin biosynthetic process	2.85E-04
16	GO:0010109: regulation of photosynthesis	2.85E-04
17	GO:0045727: positive regulation of translation	2.85E-04
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.48E-04
19	GO:0010492: maintenance of shoot apical meristem identity	7.22E-04
20	GO:0006002: fructose 6-phosphate metabolic process	8.20E-04
21	GO:0071482: cellular response to light stimulus	8.20E-04
22	GO:0032544: plastid translation	8.20E-04
23	GO:0048507: meristem development	9.20E-04
24	GO:0010206: photosystem II repair	9.20E-04
25	GO:0009638: phototropism	1.02E-03
26	GO:0009750: response to fructose	1.24E-03
27	GO:0005983: starch catabolic process	1.36E-03
28	GO:0006094: gluconeogenesis	1.47E-03
29	GO:0005986: sucrose biosynthetic process	1.47E-03
30	GO:0009785: blue light signaling pathway	1.47E-03
31	GO:0006108: malate metabolic process	1.47E-03
32	GO:0071732: cellular response to nitric oxide	1.72E-03
33	GO:0008299: isoprenoid biosynthetic process	2.12E-03
34	GO:0035428: hexose transmembrane transport	2.40E-03
35	GO:0071369: cellular response to ethylene stimulus	2.55E-03
36	GO:0006012: galactose metabolic process	2.55E-03
37	GO:0009686: gibberellin biosynthetic process	2.55E-03
38	GO:0046323: glucose import	3.15E-03
39	GO:0010268: brassinosteroid homeostasis	3.15E-03
40	GO:0019252: starch biosynthetic process	3.47E-03
41	GO:0016132: brassinosteroid biosynthetic process	3.63E-03
42	GO:0015979: photosynthesis	3.83E-03
43	GO:1901657: glycosyl compound metabolic process	3.97E-03
44	GO:0071281: cellular response to iron ion	3.97E-03
45	GO:0009567: double fertilization forming a zygote and endosperm	4.14E-03
46	GO:0016125: sterol metabolic process	4.14E-03
47	GO:0042128: nitrate assimilation	5.04E-03
48	GO:0005975: carbohydrate metabolic process	5.12E-03
49	GO:0016311: dephosphorylation	5.41E-03
50	GO:0009817: defense response to fungus, incompatible interaction	5.60E-03
51	GO:0009631: cold acclimation	6.19E-03
52	GO:0006099: tricarboxylic acid cycle	6.80E-03
53	GO:0006631: fatty acid metabolic process	7.43E-03
54	GO:0009735: response to cytokinin	8.00E-03
55	GO:0006364: rRNA processing	9.69E-03
56	GO:0006857: oligopeptide transport	1.02E-02
57	GO:0055085: transmembrane transport	1.11E-02
58	GO:0009742: brassinosteroid mediated signaling pathway	1.29E-02
59	GO:0055114: oxidation-reduction process	2.98E-02
60	GO:0045454: cell redox homeostasis	3.31E-02
61	GO:0006869: lipid transport	3.53E-02
62	GO:0032259: methylation	3.72E-02
63	GO:0009408: response to heat	3.84E-02
64	GO:0008152: metabolic process	4.12E-02
65	GO:0016310: phosphorylation	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0004333: fumarate hydratase activity	3.25E-05
6	GO:0051777: ent-kaurenoate oxidase activity	3.25E-05
7	GO:0004856: xylulokinase activity	3.25E-05
8	GO:0008266: poly(U) RNA binding	4.55E-05
9	GO:0047746: chlorophyllase activity	8.18E-05
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.18E-05
11	GO:0033201: alpha-1,4-glucan synthase activity	8.18E-05
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.18E-05
13	GO:0070402: NADPH binding	1.42E-04
14	GO:0004324: ferredoxin-NADP+ reductase activity	1.42E-04
15	GO:0004373: glycogen (starch) synthase activity	1.42E-04
16	GO:0016853: isomerase activity	1.57E-04
17	GO:0019201: nucleotide kinase activity	2.11E-04
18	GO:0009011: starch synthase activity	2.85E-04
19	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.65E-04
20	GO:0003959: NADPH dehydrogenase activity	3.65E-04
21	GO:0004017: adenylate kinase activity	5.36E-04
22	GO:0004034: aldose 1-epimerase activity	7.22E-04
23	GO:0008559: xenobiotic-transporting ATPase activity	1.24E-03
24	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.24E-03
25	GO:0005355: glucose transmembrane transporter activity	3.31E-03
26	GO:0050662: coenzyme binding	3.31E-03
27	GO:0102483: scopolin beta-glucosidase activity	5.22E-03
28	GO:0004721: phosphoprotein phosphatase activity	5.22E-03
29	GO:0009055: electron carrier activity	5.30E-03
30	GO:0008236: serine-type peptidase activity	5.41E-03
31	GO:0030145: manganese ion binding	6.19E-03
32	GO:0008422: beta-glucosidase activity	7.01E-03
33	GO:0005198: structural molecule activity	8.53E-03
34	GO:0016874: ligase activity	1.19E-02
35	GO:0019825: oxygen binding	1.25E-02
36	GO:0019843: rRNA binding	1.46E-02
37	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.48E-02
38	GO:0004252: serine-type endopeptidase activity	1.57E-02
39	GO:0015144: carbohydrate transmembrane transporter activity	1.65E-02
40	GO:0005506: iron ion binding	1.75E-02
41	GO:0005351: sugar:proton symporter activity	1.80E-02
42	GO:0003824: catalytic activity	1.95E-02
43	GO:0008168: methyltransferase activity	2.43E-02
44	GO:0020037: heme binding	2.81E-02
45	GO:0008233: peptidase activity	2.87E-02
46	GO:0004497: monooxygenase activity	2.91E-02
47	GO:0004871: signal transducer activity	3.42E-02
48	GO:0016787: hydrolase activity	3.81E-02
49	GO:0008289: lipid binding	4.85E-02
50	GO:0005515: protein binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.84E-14
3	GO:0009507: chloroplast	2.12E-11
4	GO:0009535: chloroplast thylakoid membrane	2.36E-07
5	GO:0009570: chloroplast stroma	1.23E-06
6	GO:0010287: plastoglobule	3.16E-06
7	GO:0009941: chloroplast envelope	3.83E-06
8	GO:0045239: tricarboxylic acid cycle enzyme complex	3.25E-05
9	GO:0031361: integral component of thylakoid membrane	3.25E-05
10	GO:0033281: TAT protein transport complex	1.42E-04
11	GO:0031977: thylakoid lumen	5.22E-04
12	GO:0009501: amyloplast	7.22E-04
13	GO:0009543: chloroplast thylakoid lumen	1.30E-03
14	GO:0009508: plastid chromosome	1.47E-03
15	GO:0009579: thylakoid	1.56E-03
16	GO:0030095: chloroplast photosystem II	1.60E-03
17	GO:0009295: nucleoid	4.32E-03
18	GO:0000325: plant-type vacuole	6.19E-03
19	GO:0009706: chloroplast inner membrane	1.24E-02
20	GO:0048046: apoplast	1.55E-02
21	GO:0009705: plant-type vacuole membrane	1.83E-02
22	GO:0031969: chloroplast membrane	2.91E-02