GO Enrichment Analysis of Co-expressed Genes with
AT5G04230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 8 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 1.83E-10 |
| 10 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.10E-08 |
| 11 | GO:0015979: photosynthesis | 1.59E-08 |
| 12 | GO:0006810: transport | 2.47E-07 |
| 13 | GO:0010196: nonphotochemical quenching | 4.26E-07 |
| 14 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.25E-07 |
| 15 | GO:0006000: fructose metabolic process | 2.36E-06 |
| 16 | GO:0006094: gluconeogenesis | 5.41E-06 |
| 17 | GO:0019253: reductive pentose-phosphate cycle | 6.71E-06 |
| 18 | GO:0006546: glycine catabolic process | 1.06E-05 |
| 19 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.06E-05 |
| 20 | GO:0009658: chloroplast organization | 3.38E-05 |
| 21 | GO:0006002: fructose 6-phosphate metabolic process | 8.31E-05 |
| 22 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.10E-04 |
| 23 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.73E-04 |
| 24 | GO:0009853: photorespiration | 1.91E-04 |
| 25 | GO:0009767: photosynthetic electron transport chain | 2.30E-04 |
| 26 | GO:0005986: sucrose biosynthetic process | 2.30E-04 |
| 27 | GO:0097054: L-glutamate biosynthetic process | 2.57E-04 |
| 28 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.57E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.57E-04 |
| 30 | GO:0010207: photosystem II assembly | 2.61E-04 |
| 31 | GO:0009735: response to cytokinin | 3.27E-04 |
| 32 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.03E-04 |
| 33 | GO:0006518: peptide metabolic process | 4.25E-04 |
| 34 | GO:0061077: chaperone-mediated protein folding | 4.43E-04 |
| 35 | GO:0006537: glutamate biosynthetic process | 6.10E-04 |
| 36 | GO:0010731: protein glutathionylation | 6.10E-04 |
| 37 | GO:0043572: plastid fission | 6.10E-04 |
| 38 | GO:0019676: ammonia assimilation cycle | 8.10E-04 |
| 39 | GO:0045727: positive regulation of translation | 8.10E-04 |
| 40 | GO:0006564: L-serine biosynthetic process | 1.02E-03 |
| 41 | GO:0006461: protein complex assembly | 1.02E-03 |
| 42 | GO:0006544: glycine metabolic process | 1.02E-03 |
| 43 | GO:0043097: pyrimidine nucleoside salvage | 1.02E-03 |
| 44 | GO:0010190: cytochrome b6f complex assembly | 1.25E-03 |
| 45 | GO:0010027: thylakoid membrane organization | 1.25E-03 |
| 46 | GO:0006563: L-serine metabolic process | 1.25E-03 |
| 47 | GO:0042549: photosystem II stabilization | 1.25E-03 |
| 48 | GO:0006206: pyrimidine nucleobase metabolic process | 1.25E-03 |
| 49 | GO:0006458: 'de novo' protein folding | 1.49E-03 |
| 50 | GO:0042026: protein refolding | 1.49E-03 |
| 51 | GO:1901259: chloroplast rRNA processing | 1.49E-03 |
| 52 | GO:0018298: protein-chromophore linkage | 1.61E-03 |
| 53 | GO:0009645: response to low light intensity stimulus | 1.75E-03 |
| 54 | GO:0009416: response to light stimulus | 1.95E-03 |
| 55 | GO:0009704: de-etiolation | 2.03E-03 |
| 56 | GO:0009409: response to cold | 2.27E-03 |
| 57 | GO:0032544: plastid translation | 2.32E-03 |
| 58 | GO:0017004: cytochrome complex assembly | 2.32E-03 |
| 59 | GO:0071482: cellular response to light stimulus | 2.32E-03 |
| 60 | GO:0009657: plastid organization | 2.32E-03 |
| 61 | GO:0010206: photosystem II repair | 2.62E-03 |
| 62 | GO:0006098: pentose-phosphate shunt | 2.62E-03 |
| 63 | GO:0046686: response to cadmium ion | 2.90E-03 |
| 64 | GO:0035999: tetrahydrofolate interconversion | 2.93E-03 |
| 65 | GO:1900865: chloroplast RNA modification | 2.93E-03 |
| 66 | GO:0009636: response to toxic substance | 2.93E-03 |
| 67 | GO:0045036: protein targeting to chloroplast | 3.25E-03 |
| 68 | GO:0019684: photosynthesis, light reaction | 3.59E-03 |
| 69 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.59E-03 |
| 70 | GO:0000272: polysaccharide catabolic process | 3.59E-03 |
| 71 | GO:0055114: oxidation-reduction process | 3.99E-03 |
| 72 | GO:0010020: chloroplast fission | 4.66E-03 |
| 73 | GO:0090351: seedling development | 5.04E-03 |
| 74 | GO:0005985: sucrose metabolic process | 5.04E-03 |
| 75 | GO:0042742: defense response to bacterium | 5.69E-03 |
| 76 | GO:0016575: histone deacetylation | 6.25E-03 |
| 77 | GO:0016226: iron-sulfur cluster assembly | 7.11E-03 |
| 78 | GO:0080092: regulation of pollen tube growth | 7.11E-03 |
| 79 | GO:0006730: one-carbon metabolic process | 7.11E-03 |
| 80 | GO:0007623: circadian rhythm | 8.60E-03 |
| 81 | GO:0042631: cellular response to water deprivation | 8.93E-03 |
| 82 | GO:0009741: response to brassinosteroid | 9.41E-03 |
| 83 | GO:0006508: proteolysis | 9.49E-03 |
| 84 | GO:0009646: response to absence of light | 9.91E-03 |
| 85 | GO:0019252: starch biosynthetic process | 1.04E-02 |
| 86 | GO:0009791: post-embryonic development | 1.04E-02 |
| 87 | GO:0080156: mitochondrial mRNA modification | 1.09E-02 |
| 88 | GO:0002229: defense response to oomycetes | 1.09E-02 |
| 89 | GO:0032502: developmental process | 1.14E-02 |
| 90 | GO:0006457: protein folding | 1.32E-02 |
| 91 | GO:0001666: response to hypoxia | 1.42E-02 |
| 92 | GO:0009816: defense response to bacterium, incompatible interaction | 1.47E-02 |
| 93 | GO:0042128: nitrate assimilation | 1.53E-02 |
| 94 | GO:0080167: response to karrikin | 1.66E-02 |
| 95 | GO:0009817: defense response to fungus, incompatible interaction | 1.71E-02 |
| 96 | GO:0009407: toxin catabolic process | 1.83E-02 |
| 97 | GO:0010218: response to far red light | 1.83E-02 |
| 98 | GO:0045454: cell redox homeostasis | 1.98E-02 |
| 99 | GO:0016051: carbohydrate biosynthetic process | 2.02E-02 |
| 100 | GO:0009637: response to blue light | 2.02E-02 |
| 101 | GO:0032259: methylation | 2.34E-02 |
| 102 | GO:0010114: response to red light | 2.42E-02 |
| 103 | GO:0009744: response to sucrose | 2.42E-02 |
| 104 | GO:0009644: response to high light intensity | 2.56E-02 |
| 105 | GO:0008152: metabolic process | 2.70E-02 |
| 106 | GO:0006855: drug transmembrane transport | 2.70E-02 |
| 107 | GO:0006364: rRNA processing | 2.99E-02 |
| 108 | GO:0006417: regulation of translation | 3.22E-02 |
| 109 | GO:0006096: glycolytic process | 3.37E-02 |
| 110 | GO:0009626: plant-type hypersensitive response | 3.53E-02 |
| 111 | GO:0009742: brassinosteroid mediated signaling pathway | 4.01E-02 |
| 112 | GO:0009058: biosynthetic process | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 2 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 3 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 8 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 9 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.23E-08 |
| 10 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.25E-07 |
| 11 | GO:0048038: quinone binding | 5.26E-05 |
| 12 | GO:0004033: aldo-keto reductase (NADP) activity | 6.58E-05 |
| 13 | GO:0016168: chlorophyll binding | 1.00E-04 |
| 14 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.10E-04 |
| 15 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 1.10E-04 |
| 16 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.10E-04 |
| 17 | GO:0030941: chloroplast targeting sequence binding | 1.10E-04 |
| 18 | GO:0003867: 4-aminobutyrate transaminase activity | 1.10E-04 |
| 19 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.57E-04 |
| 20 | GO:0010297: heteropolysaccharide binding | 2.57E-04 |
| 21 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.57E-04 |
| 22 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.57E-04 |
| 23 | GO:0004047: aminomethyltransferase activity | 2.57E-04 |
| 24 | GO:0008967: phosphoglycolate phosphatase activity | 2.57E-04 |
| 25 | GO:0031409: pigment binding | 3.29E-04 |
| 26 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 4.25E-04 |
| 27 | GO:0030267: glyoxylate reductase (NADP) activity | 4.25E-04 |
| 28 | GO:0070402: NADPH binding | 4.25E-04 |
| 29 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.25E-04 |
| 30 | GO:0004176: ATP-dependent peptidase activity | 4.43E-04 |
| 31 | GO:0048487: beta-tubulin binding | 6.10E-04 |
| 32 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.10E-04 |
| 33 | GO:0051861: glycolipid binding | 8.10E-04 |
| 34 | GO:0019843: rRNA binding | 8.28E-04 |
| 35 | GO:0004372: glycine hydroxymethyltransferase activity | 1.02E-03 |
| 36 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.02E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 1.25E-03 |
| 38 | GO:0042578: phosphoric ester hydrolase activity | 1.25E-03 |
| 39 | GO:0004849: uridine kinase activity | 1.49E-03 |
| 40 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.49E-03 |
| 41 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.49E-03 |
| 42 | GO:0004222: metalloendopeptidase activity | 1.78E-03 |
| 43 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.32E-03 |
| 44 | GO:0004364: glutathione transferase activity | 2.51E-03 |
| 45 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.82E-03 |
| 46 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 3.59E-03 |
| 47 | GO:0044183: protein binding involved in protein folding | 3.59E-03 |
| 48 | GO:0015386: potassium:proton antiporter activity | 3.59E-03 |
| 49 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.30E-03 |
| 50 | GO:0031072: heat shock protein binding | 4.30E-03 |
| 51 | GO:0008266: poly(U) RNA binding | 4.66E-03 |
| 52 | GO:0051082: unfolded protein binding | 4.98E-03 |
| 53 | GO:0005509: calcium ion binding | 5.03E-03 |
| 54 | GO:0016787: hydrolase activity | 5.07E-03 |
| 55 | GO:0051536: iron-sulfur cluster binding | 5.84E-03 |
| 56 | GO:0004407: histone deacetylase activity | 5.84E-03 |
| 57 | GO:0005528: FK506 binding | 5.84E-03 |
| 58 | GO:0015079: potassium ion transmembrane transporter activity | 6.25E-03 |
| 59 | GO:0043424: protein histidine kinase binding | 6.25E-03 |
| 60 | GO:0046872: metal ion binding | 6.62E-03 |
| 61 | GO:0022891: substrate-specific transmembrane transporter activity | 7.55E-03 |
| 62 | GO:0050662: coenzyme binding | 9.91E-03 |
| 63 | GO:0008168: methyltransferase activity | 1.28E-02 |
| 64 | GO:0008483: transaminase activity | 1.30E-02 |
| 65 | GO:0008237: metallopeptidase activity | 1.30E-02 |
| 66 | GO:0016597: amino acid binding | 1.36E-02 |
| 67 | GO:0004721: phosphoprotein phosphatase activity | 1.59E-02 |
| 68 | GO:0008236: serine-type peptidase activity | 1.65E-02 |
| 69 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.65E-02 |
| 70 | GO:0015238: drug transmembrane transporter activity | 1.77E-02 |
| 71 | GO:0050897: cobalt ion binding | 1.89E-02 |
| 72 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.09E-02 |
| 73 | GO:0043621: protein self-association | 2.56E-02 |
| 74 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.70E-02 |
| 75 | GO:0051287: NAD binding | 2.77E-02 |
| 76 | GO:0030170: pyridoxal phosphate binding | 4.86E-02 |
| 77 | GO:0004252: serine-type endopeptidase activity | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.55E-43 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.30E-29 |
| 4 | GO:0009570: chloroplast stroma | 1.72E-18 |
| 5 | GO:0009941: chloroplast envelope | 1.40E-17 |
| 6 | GO:0009534: chloroplast thylakoid | 1.47E-14 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 7.74E-14 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.30E-13 |
| 9 | GO:0009579: thylakoid | 3.51E-13 |
| 10 | GO:0030095: chloroplast photosystem II | 7.69E-08 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 2.16E-07 |
| 12 | GO:0031977: thylakoid lumen | 4.26E-07 |
| 13 | GO:0019898: extrinsic component of membrane | 1.20E-06 |
| 14 | GO:0010319: stromule | 2.48E-06 |
| 15 | GO:0009523: photosystem II | 4.73E-05 |
| 16 | GO:0048046: apoplast | 7.37E-05 |
| 17 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.10E-04 |
| 18 | GO:0009782: photosystem I antenna complex | 1.10E-04 |
| 19 | GO:0005759: mitochondrial matrix | 1.33E-04 |
| 20 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.57E-04 |
| 21 | GO:0030076: light-harvesting complex | 2.94E-04 |
| 22 | GO:0042651: thylakoid membrane | 4.03E-04 |
| 23 | GO:0031969: chloroplast membrane | 4.56E-04 |
| 24 | GO:0005960: glycine cleavage complex | 6.10E-04 |
| 25 | GO:0010287: plastoglobule | 7.74E-04 |
| 26 | GO:0009517: PSII associated light-harvesting complex II | 8.10E-04 |
| 27 | GO:0009512: cytochrome b6f complex | 1.02E-03 |
| 28 | GO:0031359: integral component of chloroplast outer membrane | 1.75E-03 |
| 29 | GO:0009533: chloroplast stromal thylakoid | 1.75E-03 |
| 30 | GO:0016020: membrane | 4.00E-03 |
| 31 | GO:0009706: chloroplast inner membrane | 4.98E-03 |
| 32 | GO:0009522: photosystem I | 9.91E-03 |
| 33 | GO:0009707: chloroplast outer membrane | 1.71E-02 |
| 34 | GO:0005747: mitochondrial respiratory chain complex I | 3.45E-02 |
| 35 | GO:0022626: cytosolic ribosome | 4.14E-02 |