GO Enrichment Analysis of Co-expressed Genes with
AT5G03880
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 3 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 4 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 5 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 6 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 7 | GO:0019284: L-methionine salvage from S-adenosylmethionine | 0.00E+00 |
| 8 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 9 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 10 | GO:0009773: photosynthetic electron transport in photosystem I | 2.57E-09 |
| 11 | GO:0006000: fructose metabolic process | 1.29E-08 |
| 12 | GO:0015979: photosynthesis | 4.67E-08 |
| 13 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.23E-06 |
| 14 | GO:0071482: cellular response to light stimulus | 5.18E-06 |
| 15 | GO:0006002: fructose 6-phosphate metabolic process | 5.18E-06 |
| 16 | GO:0010027: thylakoid membrane organization | 2.35E-05 |
| 17 | GO:0006094: gluconeogenesis | 2.64E-05 |
| 18 | GO:0045727: positive regulation of translation | 3.41E-05 |
| 19 | GO:0010021: amylopectin biosynthetic process | 3.41E-05 |
| 20 | GO:0010025: wax biosynthetic process | 4.66E-05 |
| 21 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 8.04E-05 |
| 22 | GO:0010196: nonphotochemical quenching | 1.47E-04 |
| 23 | GO:0019252: starch biosynthetic process | 1.91E-04 |
| 24 | GO:0043953: protein transport by the Tat complex | 2.18E-04 |
| 25 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.18E-04 |
| 26 | GO:1904964: positive regulation of phytol biosynthetic process | 2.18E-04 |
| 27 | GO:0065002: intracellular protein transmembrane transport | 2.18E-04 |
| 28 | GO:0043609: regulation of carbon utilization | 2.18E-04 |
| 29 | GO:0032544: plastid translation | 2.33E-04 |
| 30 | GO:0010206: photosystem II repair | 2.82E-04 |
| 31 | GO:0009735: response to cytokinin | 4.23E-04 |
| 32 | GO:0006352: DNA-templated transcription, initiation | 4.56E-04 |
| 33 | GO:0000038: very long-chain fatty acid metabolic process | 4.56E-04 |
| 34 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.86E-04 |
| 35 | GO:0034755: iron ion transmembrane transport | 4.86E-04 |
| 36 | GO:0080005: photosystem stoichiometry adjustment | 4.86E-04 |
| 37 | GO:0009662: etioplast organization | 4.86E-04 |
| 38 | GO:0018298: protein-chromophore linkage | 4.90E-04 |
| 39 | GO:0005983: starch catabolic process | 5.22E-04 |
| 40 | GO:0005986: sucrose biosynthetic process | 5.92E-04 |
| 41 | GO:0010207: photosystem II assembly | 6.66E-04 |
| 42 | GO:0051604: protein maturation | 7.90E-04 |
| 43 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.01E-03 |
| 44 | GO:0046653: tetrahydrofolate metabolic process | 1.13E-03 |
| 45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.13E-03 |
| 46 | GO:2001141: regulation of RNA biosynthetic process | 1.13E-03 |
| 47 | GO:0009152: purine ribonucleotide biosynthetic process | 1.13E-03 |
| 48 | GO:0006364: rRNA processing | 1.31E-03 |
| 49 | GO:0009658: chloroplast organization | 1.39E-03 |
| 50 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.50E-03 |
| 51 | GO:0009765: photosynthesis, light harvesting | 1.50E-03 |
| 52 | GO:0015994: chlorophyll metabolic process | 1.50E-03 |
| 53 | GO:0071483: cellular response to blue light | 1.50E-03 |
| 54 | GO:0042335: cuticle development | 1.66E-03 |
| 55 | GO:0009247: glycolipid biosynthetic process | 1.91E-03 |
| 56 | GO:0006544: glycine metabolic process | 1.91E-03 |
| 57 | GO:0006564: L-serine biosynthetic process | 1.91E-03 |
| 58 | GO:0006461: protein complex assembly | 1.91E-03 |
| 59 | GO:0009416: response to light stimulus | 2.10E-03 |
| 60 | GO:0000470: maturation of LSU-rRNA | 2.35E-03 |
| 61 | GO:0009913: epidermal cell differentiation | 2.35E-03 |
| 62 | GO:0010190: cytochrome b6f complex assembly | 2.35E-03 |
| 63 | GO:0006563: L-serine metabolic process | 2.35E-03 |
| 64 | GO:0042549: photosystem II stabilization | 2.35E-03 |
| 65 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.35E-03 |
| 66 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.83E-03 |
| 67 | GO:0042026: protein refolding | 2.83E-03 |
| 68 | GO:0006458: 'de novo' protein folding | 2.83E-03 |
| 69 | GO:0010019: chloroplast-nucleus signaling pathway | 2.83E-03 |
| 70 | GO:0009645: response to low light intensity stimulus | 3.33E-03 |
| 71 | GO:0015995: chlorophyll biosynthetic process | 3.72E-03 |
| 72 | GO:0009409: response to cold | 3.75E-03 |
| 73 | GO:0048564: photosystem I assembly | 3.86E-03 |
| 74 | GO:0008610: lipid biosynthetic process | 3.86E-03 |
| 75 | GO:0005978: glycogen biosynthetic process | 3.86E-03 |
| 76 | GO:0019375: galactolipid biosynthetic process | 3.86E-03 |
| 77 | GO:0009704: de-etiolation | 3.86E-03 |
| 78 | GO:0015996: chlorophyll catabolic process | 4.42E-03 |
| 79 | GO:0009657: plastid organization | 4.42E-03 |
| 80 | GO:0006098: pentose-phosphate shunt | 5.00E-03 |
| 81 | GO:0000373: Group II intron splicing | 5.00E-03 |
| 82 | GO:0009853: photorespiration | 5.22E-03 |
| 83 | GO:0009637: response to blue light | 5.22E-03 |
| 84 | GO:0010205: photoinhibition | 5.62E-03 |
| 85 | GO:0035999: tetrahydrofolate interconversion | 5.62E-03 |
| 86 | GO:0042761: very long-chain fatty acid biosynthetic process | 5.62E-03 |
| 87 | GO:0005982: starch metabolic process | 5.62E-03 |
| 88 | GO:0045036: protein targeting to chloroplast | 6.25E-03 |
| 89 | GO:0006508: proteolysis | 6.60E-03 |
| 90 | GO:0010114: response to red light | 6.73E-03 |
| 91 | GO:0006879: cellular iron ion homeostasis | 6.91E-03 |
| 92 | GO:0000272: polysaccharide catabolic process | 6.91E-03 |
| 93 | GO:0009750: response to fructose | 6.91E-03 |
| 94 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.91E-03 |
| 95 | GO:0006855: drug transmembrane transport | 7.86E-03 |
| 96 | GO:0010628: positive regulation of gene expression | 8.30E-03 |
| 97 | GO:0009767: photosynthetic electron transport chain | 8.30E-03 |
| 98 | GO:0010143: cutin biosynthetic process | 9.03E-03 |
| 99 | GO:0019253: reductive pentose-phosphate cycle | 9.03E-03 |
| 100 | GO:0080167: response to karrikin | 9.40E-03 |
| 101 | GO:0005985: sucrose metabolic process | 9.79E-03 |
| 102 | GO:0090351: seedling development | 9.79E-03 |
| 103 | GO:0045893: positive regulation of transcription, DNA-templated | 1.03E-02 |
| 104 | GO:0008299: isoprenoid biosynthetic process | 1.22E-02 |
| 105 | GO:0016575: histone deacetylation | 1.22E-02 |
| 106 | GO:0061077: chaperone-mediated protein folding | 1.30E-02 |
| 107 | GO:0016226: iron-sulfur cluster assembly | 1.39E-02 |
| 108 | GO:0035428: hexose transmembrane transport | 1.39E-02 |
| 109 | GO:0032259: methylation | 1.46E-02 |
| 110 | GO:0070417: cellular response to cold | 1.66E-02 |
| 111 | GO:0016117: carotenoid biosynthetic process | 1.66E-02 |
| 112 | GO:0042631: cellular response to water deprivation | 1.75E-02 |
| 113 | GO:0008152: metabolic process | 1.75E-02 |
| 114 | GO:0046323: glucose import | 1.85E-02 |
| 115 | GO:0006814: sodium ion transport | 1.95E-02 |
| 116 | GO:0006633: fatty acid biosynthetic process | 2.04E-02 |
| 117 | GO:0009791: post-embryonic development | 2.05E-02 |
| 118 | GO:0008654: phospholipid biosynthetic process | 2.05E-02 |
| 119 | GO:0006413: translational initiation | 2.09E-02 |
| 120 | GO:0007623: circadian rhythm | 2.25E-02 |
| 121 | GO:0016032: viral process | 2.25E-02 |
| 122 | GO:0030163: protein catabolic process | 2.36E-02 |
| 123 | GO:0009567: double fertilization forming a zygote and endosperm | 2.46E-02 |
| 124 | GO:0010468: regulation of gene expression | 2.68E-02 |
| 125 | GO:0001666: response to hypoxia | 2.79E-02 |
| 126 | GO:0009816: defense response to bacterium, incompatible interaction | 2.91E-02 |
| 127 | GO:0016311: dephosphorylation | 3.25E-02 |
| 128 | GO:0009826: unidimensional cell growth | 3.34E-02 |
| 129 | GO:0030244: cellulose biosynthetic process | 3.37E-02 |
| 130 | GO:0006499: N-terminal protein myristoylation | 3.62E-02 |
| 131 | GO:0010218: response to far red light | 3.62E-02 |
| 132 | GO:0009631: cold acclimation | 3.74E-02 |
| 133 | GO:0006810: transport | 4.22E-02 |
| 134 | GO:0055085: transmembrane transport | 4.25E-02 |
| 135 | GO:0006457: protein folding | 4.35E-02 |
| 136 | GO:0005975: carbohydrate metabolic process | 4.43E-02 |
| 137 | GO:0046777: protein autophosphorylation | 4.59E-02 |
| 138 | GO:0046686: response to cadmium ion | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 2 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 3 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 4 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 6 | GO:0051060: pullulanase activity | 0.00E+00 |
| 7 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 8 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 9 | GO:0046570: methylthioribulose 1-phosphate dehydratase activity | 0.00E+00 |
| 10 | GO:0043874: acireductone synthase activity | 0.00E+00 |
| 11 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 12 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 13 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 14 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 15 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 16 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.23E-06 |
| 17 | GO:0016987: sigma factor activity | 3.41E-05 |
| 18 | GO:0001053: plastid sigma factor activity | 3.41E-05 |
| 19 | GO:0004033: aldo-keto reductase (NADP) activity | 1.88E-04 |
| 20 | GO:0004856: xylulokinase activity | 2.18E-04 |
| 21 | GO:0009496: plastoquinol--plastocyanin reductase activity | 2.18E-04 |
| 22 | GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity | 2.18E-04 |
| 23 | GO:0070006: metalloaminopeptidase activity | 2.18E-04 |
| 24 | GO:0034256: chlorophyll(ide) b reductase activity | 2.18E-04 |
| 25 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.18E-04 |
| 26 | GO:0030941: chloroplast targeting sequence binding | 2.18E-04 |
| 27 | GO:0016168: chlorophyll binding | 3.73E-04 |
| 28 | GO:0033201: alpha-1,4-glucan synthase activity | 4.86E-04 |
| 29 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 4.86E-04 |
| 30 | GO:0016630: protochlorophyllide reductase activity | 4.86E-04 |
| 31 | GO:0047746: chlorophyllase activity | 4.86E-04 |
| 32 | GO:0010297: heteropolysaccharide binding | 4.86E-04 |
| 33 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.86E-04 |
| 34 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.86E-04 |
| 35 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 4.86E-04 |
| 36 | GO:0008266: poly(U) RNA binding | 6.66E-04 |
| 37 | GO:0043169: cation binding | 7.90E-04 |
| 38 | GO:0004373: glycogen (starch) synthase activity | 7.90E-04 |
| 39 | GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity | 7.90E-04 |
| 40 | GO:0004751: ribose-5-phosphate isomerase activity | 7.90E-04 |
| 41 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.90E-04 |
| 42 | GO:0070402: NADPH binding | 7.90E-04 |
| 43 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.90E-04 |
| 44 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.29E-04 |
| 45 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.29E-04 |
| 46 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.29E-04 |
| 47 | GO:0031409: pigment binding | 8.29E-04 |
| 48 | GO:0005528: FK506 binding | 9.15E-04 |
| 49 | GO:0004176: ATP-dependent peptidase activity | 1.10E-03 |
| 50 | GO:0019201: nucleotide kinase activity | 1.13E-03 |
| 51 | GO:0035250: UDP-galactosyltransferase activity | 1.13E-03 |
| 52 | GO:0048487: beta-tubulin binding | 1.13E-03 |
| 53 | GO:0008508: bile acid:sodium symporter activity | 1.13E-03 |
| 54 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.50E-03 |
| 55 | GO:0043495: protein anchor | 1.50E-03 |
| 56 | GO:0009011: starch synthase activity | 1.50E-03 |
| 57 | GO:0051861: glycolipid binding | 1.50E-03 |
| 58 | GO:0004372: glycine hydroxymethyltransferase activity | 1.91E-03 |
| 59 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.91E-03 |
| 60 | GO:0003959: NADPH dehydrogenase activity | 1.91E-03 |
| 61 | GO:0050662: coenzyme binding | 1.92E-03 |
| 62 | GO:0004332: fructose-bisphosphate aldolase activity | 2.35E-03 |
| 63 | GO:0004556: alpha-amylase activity | 2.35E-03 |
| 64 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 2.35E-03 |
| 65 | GO:2001070: starch binding | 2.35E-03 |
| 66 | GO:0019843: rRNA binding | 2.73E-03 |
| 67 | GO:0008237: metallopeptidase activity | 2.82E-03 |
| 68 | GO:0004017: adenylate kinase activity | 2.83E-03 |
| 69 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.83E-03 |
| 70 | GO:0016787: hydrolase activity | 3.03E-03 |
| 71 | GO:0019899: enzyme binding | 3.33E-03 |
| 72 | GO:0016491: oxidoreductase activity | 3.55E-03 |
| 73 | GO:0004721: phosphoprotein phosphatase activity | 3.72E-03 |
| 74 | GO:0043022: ribosome binding | 3.86E-03 |
| 75 | GO:0008236: serine-type peptidase activity | 3.92E-03 |
| 76 | GO:0015238: drug transmembrane transporter activity | 4.33E-03 |
| 77 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.42E-03 |
| 78 | GO:0004222: metalloendopeptidase activity | 4.55E-03 |
| 79 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 5.56E-03 |
| 80 | GO:0005381: iron ion transmembrane transporter activity | 5.62E-03 |
| 81 | GO:0008168: methyltransferase activity | 6.81E-03 |
| 82 | GO:0015386: potassium:proton antiporter activity | 6.91E-03 |
| 83 | GO:0004177: aminopeptidase activity | 6.91E-03 |
| 84 | GO:0044183: protein binding involved in protein folding | 6.91E-03 |
| 85 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.86E-03 |
| 86 | GO:0004565: beta-galactosidase activity | 8.30E-03 |
| 87 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.30E-03 |
| 88 | GO:0031072: heat shock protein binding | 8.30E-03 |
| 89 | GO:0005215: transporter activity | 8.59E-03 |
| 90 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 9.08E-03 |
| 91 | GO:0008233: peptidase activity | 9.20E-03 |
| 92 | GO:0051536: iron-sulfur cluster binding | 1.14E-02 |
| 93 | GO:0004407: histone deacetylase activity | 1.14E-02 |
| 94 | GO:0043424: protein histidine kinase binding | 1.22E-02 |
| 95 | GO:0015079: potassium ion transmembrane transporter activity | 1.22E-02 |
| 96 | GO:0051082: unfolded protein binding | 1.30E-02 |
| 97 | GO:0016746: transferase activity, transferring acyl groups | 1.33E-02 |
| 98 | GO:0046872: metal ion binding | 1.39E-02 |
| 99 | GO:0022891: substrate-specific transmembrane transporter activity | 1.48E-02 |
| 100 | GO:0005355: glucose transmembrane transporter activity | 1.95E-02 |
| 101 | GO:0016853: isomerase activity | 1.95E-02 |
| 102 | GO:0015297: antiporter activity | 2.14E-02 |
| 103 | GO:0016791: phosphatase activity | 2.46E-02 |
| 104 | GO:0003743: translation initiation factor activity | 2.62E-02 |
| 105 | GO:0016597: amino acid binding | 2.68E-02 |
| 106 | GO:0003824: catalytic activity | 2.77E-02 |
| 107 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 3.02E-02 |
| 108 | GO:0004683: calmodulin-dependent protein kinase activity | 3.14E-02 |
| 109 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.74E-02 |
| 110 | GO:0030145: manganese ion binding | 3.74E-02 |
| 111 | GO:0003746: translation elongation factor activity | 3.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009571: proplastid stroma | 0.00E+00 |
| 3 | GO:0043235: receptor complex | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 5.78E-53 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.43E-30 |
| 6 | GO:0009941: chloroplast envelope | 2.87E-25 |
| 7 | GO:0009570: chloroplast stroma | 6.98E-21 |
| 8 | GO:0009534: chloroplast thylakoid | 7.29E-21 |
| 9 | GO:0009579: thylakoid | 2.88E-08 |
| 10 | GO:0010287: plastoglobule | 1.65E-07 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 2.00E-07 |
| 12 | GO:0031969: chloroplast membrane | 4.24E-07 |
| 13 | GO:0031977: thylakoid lumen | 5.17E-06 |
| 14 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.27E-06 |
| 15 | GO:0009501: amyloplast | 1.88E-04 |
| 16 | GO:0009782: photosystem I antenna complex | 2.18E-04 |
| 17 | GO:0031361: integral component of thylakoid membrane | 2.18E-04 |
| 18 | GO:0010319: stromule | 2.97E-04 |
| 19 | GO:0031357: integral component of chloroplast inner membrane | 4.86E-04 |
| 20 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.86E-04 |
| 21 | GO:0030076: light-harvesting complex | 7.45E-04 |
| 22 | GO:0033281: TAT protein transport complex | 7.90E-04 |
| 23 | GO:0042651: thylakoid membrane | 1.01E-03 |
| 24 | GO:0009526: plastid envelope | 1.50E-03 |
| 25 | GO:0055035: plastid thylakoid membrane | 1.91E-03 |
| 26 | GO:0009512: cytochrome b6f complex | 1.91E-03 |
| 27 | GO:0009523: photosystem II | 2.06E-03 |
| 28 | GO:0031359: integral component of chloroplast outer membrane | 3.33E-03 |
| 29 | GO:0009533: chloroplast stromal thylakoid | 3.33E-03 |
| 30 | GO:0048046: apoplast | 3.41E-03 |
| 31 | GO:0016020: membrane | 3.49E-03 |
| 32 | GO:0009707: chloroplast outer membrane | 4.12E-03 |
| 33 | GO:0016021: integral component of membrane | 6.48E-03 |
| 34 | GO:0030095: chloroplast photosystem II | 9.03E-03 |
| 35 | GO:0009654: photosystem II oxygen evolving complex | 1.22E-02 |
| 36 | GO:0009706: chloroplast inner membrane | 1.30E-02 |
| 37 | GO:0009522: photosystem I | 1.95E-02 |
| 38 | GO:0019898: extrinsic component of membrane | 2.05E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 2.79E-02 |