GO Enrichment Analysis of Co-expressed Genes with
AT5G02250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 4 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 5 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 3.31E-08 |
| 7 | GO:0010027: thylakoid membrane organization | 4.74E-06 |
| 8 | GO:0009853: photorespiration | 1.39E-05 |
| 9 | GO:0042335: cuticle development | 4.42E-05 |
| 10 | GO:0000481: maturation of 5S rRNA | 1.25E-04 |
| 11 | GO:0042371: vitamin K biosynthetic process | 1.25E-04 |
| 12 | GO:1902458: positive regulation of stomatal opening | 1.25E-04 |
| 13 | GO:0034337: RNA folding | 1.25E-04 |
| 14 | GO:0034757: negative regulation of iron ion transport | 1.25E-04 |
| 15 | GO:0051180: vitamin transport | 1.25E-04 |
| 16 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.25E-04 |
| 17 | GO:0030974: thiamine pyrophosphate transport | 1.25E-04 |
| 18 | GO:0006633: fatty acid biosynthetic process | 1.82E-04 |
| 19 | GO:0000038: very long-chain fatty acid metabolic process | 2.10E-04 |
| 20 | GO:0009773: photosynthetic electron transport in photosystem I | 2.10E-04 |
| 21 | GO:0006094: gluconeogenesis | 2.77E-04 |
| 22 | GO:0010271: regulation of chlorophyll catabolic process | 2.90E-04 |
| 23 | GO:0097054: L-glutamate biosynthetic process | 2.90E-04 |
| 24 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.90E-04 |
| 25 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.90E-04 |
| 26 | GO:0015893: drug transport | 2.90E-04 |
| 27 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.93E-04 |
| 28 | GO:0009636: response to toxic substance | 3.99E-04 |
| 29 | GO:0006000: fructose metabolic process | 4.78E-04 |
| 30 | GO:0080117: secondary growth | 4.78E-04 |
| 31 | GO:0006954: inflammatory response | 4.78E-04 |
| 32 | GO:0055114: oxidation-reduction process | 4.99E-04 |
| 33 | GO:0009306: protein secretion | 6.80E-04 |
| 34 | GO:0009152: purine ribonucleotide biosynthetic process | 6.85E-04 |
| 35 | GO:0046653: tetrahydrofolate metabolic process | 6.85E-04 |
| 36 | GO:0006537: glutamate biosynthetic process | 6.85E-04 |
| 37 | GO:0010731: protein glutathionylation | 6.85E-04 |
| 38 | GO:0010037: response to carbon dioxide | 9.08E-04 |
| 39 | GO:0006808: regulation of nitrogen utilization | 9.08E-04 |
| 40 | GO:0019676: ammonia assimilation cycle | 9.08E-04 |
| 41 | GO:0015976: carbon utilization | 9.08E-04 |
| 42 | GO:2000122: negative regulation of stomatal complex development | 9.08E-04 |
| 43 | GO:0006810: transport | 9.39E-04 |
| 44 | GO:0006564: L-serine biosynthetic process | 1.15E-03 |
| 45 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.15E-03 |
| 46 | GO:0006461: protein complex assembly | 1.15E-03 |
| 47 | GO:0032973: amino acid export | 1.41E-03 |
| 48 | GO:0009913: epidermal cell differentiation | 1.41E-03 |
| 49 | GO:0048831: regulation of shoot system development | 1.41E-03 |
| 50 | GO:0010190: cytochrome b6f complex assembly | 1.41E-03 |
| 51 | GO:0048509: regulation of meristem development | 1.68E-03 |
| 52 | GO:0030488: tRNA methylation | 1.68E-03 |
| 53 | GO:0009854: oxidative photosynthetic carbon pathway | 1.68E-03 |
| 54 | GO:0042372: phylloquinone biosynthetic process | 1.68E-03 |
| 55 | GO:0018298: protein-chromophore linkage | 1.93E-03 |
| 56 | GO:0009645: response to low light intensity stimulus | 1.98E-03 |
| 57 | GO:0006400: tRNA modification | 1.98E-03 |
| 58 | GO:0043090: amino acid import | 1.98E-03 |
| 59 | GO:0030497: fatty acid elongation | 1.98E-03 |
| 60 | GO:0010196: nonphotochemical quenching | 1.98E-03 |
| 61 | GO:0006605: protein targeting | 2.29E-03 |
| 62 | GO:0032508: DNA duplex unwinding | 2.29E-03 |
| 63 | GO:2000070: regulation of response to water deprivation | 2.29E-03 |
| 64 | GO:0009231: riboflavin biosynthetic process | 2.29E-03 |
| 65 | GO:0008610: lipid biosynthetic process | 2.29E-03 |
| 66 | GO:0032544: plastid translation | 2.61E-03 |
| 67 | GO:0006002: fructose 6-phosphate metabolic process | 2.61E-03 |
| 68 | GO:0015996: chlorophyll catabolic process | 2.61E-03 |
| 69 | GO:0007186: G-protein coupled receptor signaling pathway | 2.61E-03 |
| 70 | GO:0009657: plastid organization | 2.61E-03 |
| 71 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.95E-03 |
| 72 | GO:0006098: pentose-phosphate shunt | 2.95E-03 |
| 73 | GO:0010206: photosystem II repair | 2.95E-03 |
| 74 | GO:0080144: amino acid homeostasis | 2.95E-03 |
| 75 | GO:0009409: response to cold | 3.13E-03 |
| 76 | GO:0010205: photoinhibition | 3.31E-03 |
| 77 | GO:0009638: phototropism | 3.31E-03 |
| 78 | GO:0009644: response to high light intensity | 3.37E-03 |
| 79 | GO:0006855: drug transmembrane transport | 3.64E-03 |
| 80 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 3.68E-03 |
| 81 | GO:0043069: negative regulation of programmed cell death | 3.68E-03 |
| 82 | GO:0006415: translational termination | 4.06E-03 |
| 83 | GO:0019684: photosynthesis, light reaction | 4.06E-03 |
| 84 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.06E-03 |
| 85 | GO:0045037: protein import into chloroplast stroma | 4.45E-03 |
| 86 | GO:0006006: glucose metabolic process | 4.86E-03 |
| 87 | GO:0005986: sucrose biosynthetic process | 4.86E-03 |
| 88 | GO:0019253: reductive pentose-phosphate cycle | 5.28E-03 |
| 89 | GO:0010207: photosystem II assembly | 5.28E-03 |
| 90 | GO:0090351: seedling development | 5.71E-03 |
| 91 | GO:0010025: wax biosynthetic process | 6.15E-03 |
| 92 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.08E-03 |
| 93 | GO:0016575: histone deacetylation | 7.08E-03 |
| 94 | GO:0061077: chaperone-mediated protein folding | 7.56E-03 |
| 95 | GO:0031408: oxylipin biosynthetic process | 7.56E-03 |
| 96 | GO:0006730: one-carbon metabolic process | 8.05E-03 |
| 97 | GO:0071215: cellular response to abscisic acid stimulus | 8.56E-03 |
| 98 | GO:0070417: cellular response to cold | 9.60E-03 |
| 99 | GO:0010087: phloem or xylem histogenesis | 1.01E-02 |
| 100 | GO:0010182: sugar mediated signaling pathway | 1.07E-02 |
| 101 | GO:0019252: starch biosynthetic process | 1.18E-02 |
| 102 | GO:0009416: response to light stimulus | 1.19E-02 |
| 103 | GO:0016132: brassinosteroid biosynthetic process | 1.24E-02 |
| 104 | GO:0009658: chloroplast organization | 1.60E-02 |
| 105 | GO:0016126: sterol biosynthetic process | 1.61E-02 |
| 106 | GO:0001666: response to hypoxia | 1.61E-02 |
| 107 | GO:0010029: regulation of seed germination | 1.67E-02 |
| 108 | GO:0000160: phosphorelay signal transduction system | 2.01E-02 |
| 109 | GO:0009407: toxin catabolic process | 2.08E-02 |
| 110 | GO:0010119: regulation of stomatal movement | 2.15E-02 |
| 111 | GO:0016051: carbohydrate biosynthetic process | 2.30E-02 |
| 112 | GO:0006839: mitochondrial transport | 2.52E-02 |
| 113 | GO:0006631: fatty acid metabolic process | 2.60E-02 |
| 114 | GO:0006869: lipid transport | 2.61E-02 |
| 115 | GO:0009744: response to sucrose | 2.75E-02 |
| 116 | GO:0051707: response to other organism | 2.75E-02 |
| 117 | GO:0008643: carbohydrate transport | 2.91E-02 |
| 118 | GO:0008152: metabolic process | 3.23E-02 |
| 119 | GO:0009736: cytokinin-activated signaling pathway | 3.40E-02 |
| 120 | GO:0009585: red, far-red light phototransduction | 3.40E-02 |
| 121 | GO:0009909: regulation of flower development | 3.66E-02 |
| 122 | GO:0006096: glycolytic process | 3.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 2 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 7 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 8 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 9 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 10 | GO:0004033: aldo-keto reductase (NADP) activity | 8.08E-05 |
| 11 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.02E-04 |
| 12 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.25E-04 |
| 13 | GO:0000248: C-5 sterol desaturase activity | 1.25E-04 |
| 14 | GO:0090422: thiamine pyrophosphate transporter activity | 1.25E-04 |
| 15 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.25E-04 |
| 16 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.90E-04 |
| 17 | GO:0042389: omega-3 fatty acid desaturase activity | 2.90E-04 |
| 18 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.90E-04 |
| 19 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.90E-04 |
| 20 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 2.90E-04 |
| 21 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.90E-04 |
| 22 | GO:0009884: cytokinin receptor activity | 2.90E-04 |
| 23 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 3.93E-04 |
| 24 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 3.93E-04 |
| 25 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 3.93E-04 |
| 26 | GO:0005528: FK506 binding | 4.36E-04 |
| 27 | GO:0005034: osmosensor activity | 4.78E-04 |
| 28 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.78E-04 |
| 29 | GO:0070402: NADPH binding | 4.78E-04 |
| 30 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.78E-04 |
| 31 | GO:0017150: tRNA dihydrouridine synthase activity | 4.78E-04 |
| 32 | GO:0003935: GTP cyclohydrolase II activity | 4.78E-04 |
| 33 | GO:0016149: translation release factor activity, codon specific | 6.85E-04 |
| 34 | GO:0048487: beta-tubulin binding | 6.85E-04 |
| 35 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 9.08E-04 |
| 36 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.15E-03 |
| 37 | GO:0009922: fatty acid elongase activity | 1.15E-03 |
| 38 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.15E-03 |
| 39 | GO:0004332: fructose-bisphosphate aldolase activity | 1.41E-03 |
| 40 | GO:0042578: phosphoric ester hydrolase activity | 1.41E-03 |
| 41 | GO:0016208: AMP binding | 1.41E-03 |
| 42 | GO:0016168: chlorophyll binding | 1.57E-03 |
| 43 | GO:0019900: kinase binding | 1.68E-03 |
| 44 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.93E-03 |
| 45 | GO:0015238: drug transmembrane transporter activity | 2.02E-03 |
| 46 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.61E-03 |
| 47 | GO:0003747: translation release factor activity | 2.95E-03 |
| 48 | GO:0016491: oxidoreductase activity | 2.98E-03 |
| 49 | GO:0004364: glutathione transferase activity | 3.00E-03 |
| 50 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.64E-03 |
| 51 | GO:0004673: protein histidine kinase activity | 3.68E-03 |
| 52 | GO:0015386: potassium:proton antiporter activity | 4.06E-03 |
| 53 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.86E-03 |
| 54 | GO:0004089: carbonate dehydratase activity | 4.86E-03 |
| 55 | GO:0000155: phosphorelay sensor kinase activity | 4.86E-03 |
| 56 | GO:0008146: sulfotransferase activity | 5.71E-03 |
| 57 | GO:0016746: transferase activity, transferring acyl groups | 6.13E-03 |
| 58 | GO:0031409: pigment binding | 6.15E-03 |
| 59 | GO:0051536: iron-sulfur cluster binding | 6.61E-03 |
| 60 | GO:0004407: histone deacetylase activity | 6.61E-03 |
| 61 | GO:0005509: calcium ion binding | 6.63E-03 |
| 62 | GO:0043424: protein histidine kinase binding | 7.08E-03 |
| 63 | GO:0015079: potassium ion transmembrane transporter activity | 7.08E-03 |
| 64 | GO:0004176: ATP-dependent peptidase activity | 7.56E-03 |
| 65 | GO:0022891: substrate-specific transmembrane transporter activity | 8.56E-03 |
| 66 | GO:0008514: organic anion transmembrane transporter activity | 9.07E-03 |
| 67 | GO:0015297: antiporter activity | 9.83E-03 |
| 68 | GO:0016597: amino acid binding | 1.54E-02 |
| 69 | GO:0050660: flavin adenine dinucleotide binding | 1.85E-02 |
| 70 | GO:0008236: serine-type peptidase activity | 1.87E-02 |
| 71 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 2.15E-02 |
| 72 | GO:0016787: hydrolase activity | 2.35E-02 |
| 73 | GO:0050661: NADP binding | 2.52E-02 |
| 74 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.52E-02 |
| 75 | GO:0043621: protein self-association | 2.91E-02 |
| 76 | GO:0035091: phosphatidylinositol binding | 2.91E-02 |
| 77 | GO:0051287: NAD binding | 3.15E-02 |
| 78 | GO:0003824: catalytic activity | 3.26E-02 |
| 79 | GO:0005215: transporter activity | 3.29E-02 |
| 80 | GO:0015171: amino acid transmembrane transporter activity | 3.66E-02 |
| 81 | GO:0008289: lipid binding | 4.07E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 8.55E-27 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.81E-12 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 3.59E-10 |
| 4 | GO:0009941: chloroplast envelope | 3.90E-10 |
| 5 | GO:0009579: thylakoid | 8.09E-09 |
| 6 | GO:0009570: chloroplast stroma | 3.35E-08 |
| 7 | GO:0009654: photosystem II oxygen evolving complex | 3.25E-07 |
| 8 | GO:0031977: thylakoid lumen | 6.90E-07 |
| 9 | GO:0019898: extrinsic component of membrane | 1.79E-06 |
| 10 | GO:0031969: chloroplast membrane | 6.93E-06 |
| 11 | GO:0030095: chloroplast photosystem II | 9.11E-06 |
| 12 | GO:0009782: photosystem I antenna complex | 1.25E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.25E-04 |
| 14 | GO:0009534: chloroplast thylakoid | 1.41E-04 |
| 15 | GO:0042170: plastid membrane | 2.90E-04 |
| 16 | GO:0009528: plastid inner membrane | 4.78E-04 |
| 17 | GO:0009527: plastid outer membrane | 9.08E-04 |
| 18 | GO:0009523: photosystem II | 9.76E-04 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 1.98E-03 |
| 20 | GO:0016021: integral component of membrane | 2.00E-03 |
| 21 | GO:0005789: endoplasmic reticulum membrane | 3.87E-03 |
| 22 | GO:0032040: small-subunit processome | 4.45E-03 |
| 23 | GO:0030076: light-harvesting complex | 5.71E-03 |
| 24 | GO:0009706: chloroplast inner membrane | 5.96E-03 |
| 25 | GO:0042651: thylakoid membrane | 7.08E-03 |
| 26 | GO:0009532: plastid stroma | 7.56E-03 |
| 27 | GO:0005759: mitochondrial matrix | 9.37E-03 |
| 28 | GO:0046658: anchored component of plasma membrane | 1.37E-02 |
| 29 | GO:0005778: peroxisomal membrane | 1.48E-02 |
| 30 | GO:0010319: stromule | 1.48E-02 |
| 31 | GO:0016020: membrane | 1.54E-02 |
| 32 | GO:0009707: chloroplast outer membrane | 1.94E-02 |
| 33 | GO:0010287: plastoglobule | 4.94E-02 |