co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0090391: granum assembly	4.66E-06
6	GO:0009773: photosynthetic electron transport in photosystem I	8.14E-06
7	GO:0010027: thylakoid membrane organization	9.69E-06
8	GO:0015994: chlorophyll metabolic process	2.01E-05
9	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	4.89E-05
10	GO:0010196: nonphotochemical quenching	9.14E-05
11	GO:0005991: trehalose metabolic process	1.60E-04
12	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	1.60E-04
13	GO:0071588: hydrogen peroxide mediated signaling pathway	1.60E-04
14	GO:0051775: response to redox state	1.60E-04
15	GO:1904966: positive regulation of vitamin E biosynthetic process	1.60E-04
16	GO:1904964: positive regulation of phytol biosynthetic process	1.60E-04
17	GO:0080051: cutin transport	1.60E-04
18	GO:0033481: galacturonate biosynthetic process	1.60E-04
19	GO:0043686: co-translational protein modification	1.60E-04
20	GO:0015979: photosynthesis	2.16E-04
21	GO:0016122: xanthophyll metabolic process	3.65E-04
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.65E-04
23	GO:0010289: homogalacturonan biosynthetic process	3.65E-04
24	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.65E-04
25	GO:0009915: phloem sucrose loading	3.65E-04
26	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.65E-04
27	GO:0043255: regulation of carbohydrate biosynthetic process	3.65E-04
28	GO:0015908: fatty acid transport	3.65E-04
29	GO:0015786: UDP-glucose transport	3.65E-04
30	GO:0015783: GDP-fucose transport	5.97E-04
31	GO:0048281: inflorescence morphogenesis	5.97E-04
32	GO:0031022: nuclear migration along microfilament	5.97E-04
33	GO:0006000: fructose metabolic process	5.97E-04
34	GO:0015675: nickel cation transport	5.97E-04
35	GO:0051604: protein maturation	5.97E-04
36	GO:0009658: chloroplast organization	7.28E-04
37	GO:0016998: cell wall macromolecule catabolic process	7.30E-04
38	GO:0006107: oxaloacetate metabolic process	8.53E-04
39	GO:0072334: UDP-galactose transmembrane transport	8.53E-04
40	GO:0042989: sequestering of actin monomers	8.53E-04
41	GO:0010148: transpiration	8.53E-04
42	GO:0010109: regulation of photosynthesis	1.13E-03
43	GO:0009765: photosynthesis, light harvesting	1.13E-03
44	GO:0045727: positive regulation of translation	1.13E-03
45	GO:0031122: cytoplasmic microtubule organization	1.13E-03
46	GO:0006734: NADH metabolic process	1.13E-03
47	GO:0010021: amylopectin biosynthetic process	1.13E-03
48	GO:0010222: stem vascular tissue pattern formation	1.13E-03
49	GO:0019252: starch biosynthetic process	1.35E-03
50	GO:0030041: actin filament polymerization	1.43E-03
51	GO:0009904: chloroplast accumulation movement	1.43E-03
52	GO:0031365: N-terminal protein amino acid modification	1.43E-03
53	GO:0010090: trichome morphogenesis	1.63E-03
54	GO:0016554: cytidine to uridine editing	1.76E-03
55	GO:0010337: regulation of salicylic acid metabolic process	1.76E-03
56	GO:0009903: chloroplast avoidance movement	2.11E-03
57	GO:0010189: vitamin E biosynthetic process	2.11E-03
58	GO:0010019: chloroplast-nucleus signaling pathway	2.11E-03
59	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.48E-03
60	GO:0009395: phospholipid catabolic process	2.48E-03
61	GO:0070370: cellular heat acclimation	2.48E-03
62	GO:0050829: defense response to Gram-negative bacterium	2.48E-03
63	GO:0009645: response to low light intensity stimulus	2.48E-03
64	GO:0010444: guard mother cell differentiation	2.48E-03
65	GO:0051510: regulation of unidimensional cell growth	2.48E-03
66	GO:0010103: stomatal complex morphogenesis	2.48E-03
67	GO:0018298: protein-chromophore linkage	2.69E-03
68	GO:0016559: peroxisome fission	2.88E-03
69	GO:0008610: lipid biosynthetic process	2.88E-03
70	GO:0009819: drought recovery	2.88E-03
71	GO:0030091: protein repair	2.88E-03
72	GO:0070413: trehalose metabolism in response to stress	2.88E-03
73	GO:0006605: protein targeting	2.88E-03
74	GO:0006002: fructose 6-phosphate metabolic process	3.29E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	3.29E-03
76	GO:0001558: regulation of cell growth	3.29E-03
77	GO:0032544: plastid translation	3.29E-03
78	GO:0034765: regulation of ion transmembrane transport	3.72E-03
79	GO:0000373: Group II intron splicing	3.72E-03
80	GO:0009735: response to cytokinin	3.77E-03
81	GO:0071577: zinc II ion transmembrane transport	4.17E-03
82	GO:1900865: chloroplast RNA modification	4.17E-03
83	GO:0009416: response to light stimulus	4.32E-03
84	GO:0019538: protein metabolic process	4.64E-03
85	GO:0006032: chitin catabolic process	4.64E-03
86	GO:0009644: response to high light intensity	4.72E-03
87	GO:0005983: starch catabolic process	5.62E-03
88	GO:0009809: lignin biosynthetic process	5.88E-03
89	GO:0006364: rRNA processing	5.88E-03
90	GO:0009718: anthocyanin-containing compound biosynthetic process	6.14E-03
91	GO:0006094: gluconeogenesis	6.14E-03
92	GO:0005986: sucrose biosynthetic process	6.14E-03
93	GO:0010588: cotyledon vascular tissue pattern formation	6.14E-03
94	GO:0006108: malate metabolic process	6.14E-03
95	GO:0050826: response to freezing	6.14E-03
96	GO:0009266: response to temperature stimulus	6.67E-03
97	GO:0010020: chloroplast fission	6.67E-03
98	GO:0010207: photosystem II assembly	6.67E-03
99	GO:0019253: reductive pentose-phosphate cycle	6.67E-03
100	GO:0006096: glycolytic process	6.95E-03
101	GO:0010053: root epidermal cell differentiation	7.22E-03
102	GO:0009225: nucleotide-sugar metabolic process	7.22E-03
103	GO:0009825: multidimensional cell growth	7.22E-03
104	GO:0010167: response to nitrate	7.22E-03
105	GO:0005985: sucrose metabolic process	7.22E-03
106	GO:0090351: seedling development	7.22E-03
107	GO:0019762: glucosinolate catabolic process	7.79E-03
108	GO:0010025: wax biosynthetic process	7.79E-03
109	GO:0009833: plant-type primary cell wall biogenesis	7.79E-03
110	GO:0005992: trehalose biosynthetic process	8.38E-03
111	GO:0009944: polarity specification of adaxial/abaxial axis	8.38E-03
112	GO:0007010: cytoskeleton organization	8.38E-03
113	GO:0055114: oxidation-reduction process	8.54E-03
114	GO:0051302: regulation of cell division	8.97E-03
115	GO:0019953: sexual reproduction	8.97E-03
116	GO:0006874: cellular calcium ion homeostasis	8.97E-03
117	GO:0007017: microtubule-based process	8.97E-03
118	GO:0009768: photosynthesis, light harvesting in photosystem I	8.97E-03
119	GO:0030245: cellulose catabolic process	1.02E-02
120	GO:0016226: iron-sulfur cluster assembly	1.02E-02
121	GO:0001944: vasculature development	1.09E-02
122	GO:0042744: hydrogen peroxide catabolic process	1.20E-02
123	GO:0009790: embryo development	1.23E-02
124	GO:0042391: regulation of membrane potential	1.29E-02
125	GO:0000413: protein peptidyl-prolyl isomerization	1.29E-02
126	GO:0010182: sugar mediated signaling pathway	1.36E-02
127	GO:0009646: response to absence of light	1.43E-02
128	GO:0007018: microtubule-based movement	1.43E-02
129	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.58E-02
130	GO:0000302: response to reactive oxygen species	1.58E-02
131	GO:0019761: glucosinolate biosynthetic process	1.65E-02
132	GO:0009611: response to wounding	1.89E-02
133	GO:0071805: potassium ion transmembrane transport	1.89E-02
134	GO:0009409: response to cold	1.98E-02
135	GO:0045893: positive regulation of transcription, DNA-templated	2.19E-02
136	GO:0006810: transport	2.23E-02
137	GO:0015995: chlorophyll biosynthetic process	2.30E-02
138	GO:0010411: xyloglucan metabolic process	2.30E-02
139	GO:0005975: carbohydrate metabolic process	2.35E-02
140	GO:0030244: cellulose biosynthetic process	2.47E-02
141	GO:0009832: plant-type cell wall biogenesis	2.56E-02
142	GO:0006811: ion transport	2.65E-02
143	GO:0009651: response to salt stress	2.71E-02
144	GO:0048527: lateral root development	2.74E-02
145	GO:0009631: cold acclimation	2.74E-02
146	GO:0080167: response to karrikin	2.79E-02
147	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.89E-02
148	GO:0016051: carbohydrate biosynthetic process	2.93E-02
149	GO:0006099: tricarboxylic acid cycle	3.02E-02
150	GO:0034599: cellular response to oxidative stress	3.02E-02
151	GO:0006631: fatty acid metabolic process	3.31E-02
152	GO:0042546: cell wall biogenesis	3.61E-02
153	GO:0006869: lipid transport	3.66E-02
154	GO:0009965: leaf morphogenesis	3.81E-02
155	GO:0009737: response to abscisic acid	3.85E-02
156	GO:0016042: lipid catabolic process	3.99E-02
157	GO:0031347: regulation of defense response	4.02E-02
158	GO:0006629: lipid metabolic process	4.11E-02
159	GO:0006812: cation transport	4.12E-02
160	GO:0009664: plant-type cell wall organization	4.12E-02
161	GO:0071555: cell wall organization	4.42E-02
162	GO:0042742: defense response to bacterium	4.42E-02
163	GO:0006979: response to oxidative stress	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0009976: tocopherol cyclase activity	0.00E+00
4	GO:1990534: thermospermine oxidase activity	0.00E+00
5	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.01E-05
6	GO:0009011: starch synthase activity	2.01E-05
7	GO:0050139: nicotinate-N-glucosyltransferase activity	1.60E-04
8	GO:0050308: sugar-phosphatase activity	1.60E-04
9	GO:0008568: microtubule-severing ATPase activity	1.60E-04
10	GO:0042586: peptide deformylase activity	1.60E-04
11	GO:0019203: carbohydrate phosphatase activity	1.60E-04
12	GO:0004163: diphosphomevalonate decarboxylase activity	1.60E-04
13	GO:0008746: NAD(P)+ transhydrogenase activity	1.60E-04
14	GO:0015245: fatty acid transporter activity	1.60E-04
15	GO:0033201: alpha-1,4-glucan synthase activity	3.65E-04
16	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.65E-04
17	GO:0008805: carbon-monoxide oxygenase activity	3.65E-04
18	GO:0008967: phosphoglycolate phosphatase activity	3.65E-04
19	GO:0015099: nickel cation transmembrane transporter activity	3.65E-04
20	GO:0047746: chlorophyllase activity	3.65E-04
21	GO:0005457: GDP-fucose transmembrane transporter activity	5.97E-04
22	GO:0015462: ATPase-coupled protein transmembrane transporter activity	5.97E-04
23	GO:0004373: glycogen (starch) synthase activity	5.97E-04
24	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	8.53E-04
25	GO:0005460: UDP-glucose transmembrane transporter activity	8.53E-04
26	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	8.53E-04
27	GO:0080032: methyl jasmonate esterase activity	1.13E-03
28	GO:1990137: plant seed peroxidase activity	1.13E-03
29	GO:0019199: transmembrane receptor protein kinase activity	1.13E-03
30	GO:0043495: protein anchor	1.13E-03
31	GO:0050378: UDP-glucuronate 4-epimerase activity	1.13E-03
32	GO:0004930: G-protein coupled receptor activity	1.13E-03
33	GO:0042277: peptide binding	1.13E-03
34	GO:0005459: UDP-galactose transmembrane transporter activity	1.43E-03
35	GO:0003785: actin monomer binding	1.43E-03
36	GO:2001070: starch binding	1.76E-03
37	GO:0080030: methyl indole-3-acetate esterase activity	1.76E-03
38	GO:0004130: cytochrome-c peroxidase activity	1.76E-03
39	GO:0016688: L-ascorbate peroxidase activity	1.76E-03
40	GO:0016615: malate dehydrogenase activity	1.76E-03
41	GO:0005242: inward rectifier potassium channel activity	2.11E-03
42	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.11E-03
43	GO:0030060: L-malate dehydrogenase activity	2.11E-03
44	GO:0016168: chlorophyll binding	2.18E-03
45	GO:0019899: enzyme binding	2.48E-03
46	GO:0004620: phospholipase activity	2.48E-03
47	GO:0008236: serine-type peptidase activity	2.56E-03
48	GO:0052747: sinapyl alcohol dehydrogenase activity	2.88E-03
49	GO:0046872: metal ion binding	3.14E-03
50	GO:0042802: identical protein binding	3.20E-03
51	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	3.72E-03
52	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.72E-03
53	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-03
54	GO:0030234: enzyme regulator activity	4.64E-03
55	GO:0004568: chitinase activity	4.64E-03
56	GO:0047372: acylglycerol lipase activity	5.12E-03
57	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.62E-03
58	GO:0004565: beta-galactosidase activity	6.14E-03
59	GO:0008266: poly(U) RNA binding	6.67E-03
60	GO:0008131: primary amine oxidase activity	6.67E-03
61	GO:0005217: intracellular ligand-gated ion channel activity	7.22E-03
62	GO:0004970: ionotropic glutamate receptor activity	7.22E-03
63	GO:0031409: pigment binding	7.79E-03
64	GO:0051536: iron-sulfur cluster binding	8.38E-03
65	GO:0005385: zinc ion transmembrane transporter activity	8.38E-03
66	GO:0003924: GTPase activity	8.87E-03
67	GO:0043424: protein histidine kinase binding	8.97E-03
68	GO:0008324: cation transmembrane transporter activity	8.97E-03
69	GO:0004176: ATP-dependent peptidase activity	9.59E-03
70	GO:0016757: transferase activity, transferring glycosyl groups	9.61E-03
71	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.02E-02
72	GO:0022891: substrate-specific transmembrane transporter activity	1.09E-02
73	GO:0008810: cellulase activity	1.09E-02
74	GO:0005249: voltage-gated potassium channel activity	1.29E-02
75	GO:0030551: cyclic nucleotide binding	1.29E-02
76	GO:0016853: isomerase activity	1.43E-02
77	GO:0050662: coenzyme binding	1.43E-02
78	GO:0008017: microtubule binding	1.52E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.58E-02
80	GO:0004518: nuclease activity	1.65E-02
81	GO:0016759: cellulose synthase activity	1.81E-02
82	GO:0016791: phosphatase activity	1.81E-02
83	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.85E-02
84	GO:0008237: metallopeptidase activity	1.89E-02
85	GO:0005200: structural constituent of cytoskeleton	1.89E-02
86	GO:0016597: amino acid binding	1.97E-02
87	GO:0051213: dioxygenase activity	2.05E-02
88	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.30E-02
89	GO:0030247: polysaccharide binding	2.30E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.60E-02
91	GO:0004222: metalloendopeptidase activity	2.65E-02
92	GO:0008233: peptidase activity	2.74E-02
93	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.93E-02
94	GO:0003993: acid phosphatase activity	3.02E-02
95	GO:0052689: carboxylic ester hydrolase activity	3.08E-02
96	GO:0005525: GTP binding	3.42E-02
97	GO:0042803: protein homodimerization activity	3.50E-02
98	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.91E-02
99	GO:0016298: lipase activity	4.44E-02
100	GO:0003777: microtubule motor activity	4.66E-02
101	GO:0003824: catalytic activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009515: granal stacked thylakoid	0.00E+00
4	GO:0009507: chloroplast	2.83E-19
5	GO:0009535: chloroplast thylakoid membrane	1.98E-12
6	GO:0009534: chloroplast thylakoid	1.92E-10
7	GO:0009570: chloroplast stroma	4.70E-08
8	GO:0009941: chloroplast envelope	2.00E-06
9	GO:0048046: apoplast	3.45E-06
10	GO:0009579: thylakoid	5.95E-06
11	GO:0009782: photosystem I antenna complex	1.60E-04
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.80E-04
13	GO:0010287: plastoglobule	2.01E-04
14	GO:0009897: external side of plasma membrane	5.97E-04
15	GO:0015630: microtubule cytoskeleton	8.53E-04
16	GO:0016021: integral component of membrane	9.95E-04
17	GO:0009526: plastid envelope	1.13E-03
18	GO:0055035: plastid thylakoid membrane	1.43E-03
19	GO:0009533: chloroplast stromal thylakoid	2.48E-03
20	GO:0009501: amyloplast	2.88E-03
21	GO:0005811: lipid particle	3.29E-03
22	GO:0031977: thylakoid lumen	4.03E-03
23	GO:0005618: cell wall	4.43E-03
24	GO:0005578: proteinaceous extracellular matrix	6.14E-03
25	GO:0005938: cell cortex	6.14E-03
26	GO:0030076: light-harvesting complex	7.22E-03
27	GO:0009706: chloroplast inner membrane	8.37E-03
28	GO:0009654: photosystem II oxygen evolving complex	8.97E-03
29	GO:0042651: thylakoid membrane	8.97E-03
30	GO:0009543: chloroplast thylakoid lumen	1.05E-02
31	GO:0015629: actin cytoskeleton	1.09E-02
32	GO:0005871: kinesin complex	1.22E-02
33	GO:0019898: extrinsic component of membrane	1.50E-02
34	GO:0009523: photosystem II	1.50E-02
35	GO:0032580: Golgi cisterna membrane	1.81E-02
36	GO:0010319: stromule	1.89E-02
37	GO:0046658: anchored component of plasma membrane	1.92E-02
38	GO:0005886: plasma membrane	2.36E-02
39	GO:0009707: chloroplast outer membrane	2.47E-02
40	GO:0000151: ubiquitin ligase complex	2.47E-02
41	GO:0005874: microtubule	2.70E-02
42	GO:0005856: cytoskeleton	3.81E-02