Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G01240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
2GO:0006223: uracil salvage0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0016553: base conversion or substitution editing0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0006642: triglyceride mobilization0.00E+00
7GO:0005996: monosaccharide metabolic process0.00E+00
8GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0042493: response to drug0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0070125: mitochondrial translational elongation0.00E+00
13GO:0002184: cytoplasmic translational termination0.00E+00
14GO:0032544: plastid translation1.72E-16
15GO:0006412: translation3.10E-13
16GO:0015979: photosynthesis5.29E-09
17GO:0009658: chloroplast organization1.36E-08
18GO:0042254: ribosome biogenesis1.49E-08
19GO:0006546: glycine catabolic process6.29E-07
20GO:0015976: carbon utilization6.29E-07
21GO:0009735: response to cytokinin2.21E-06
22GO:0009409: response to cold3.80E-05
23GO:0006633: fatty acid biosynthetic process4.80E-05
24GO:2000122: negative regulation of stomatal complex development7.53E-05
25GO:0010037: response to carbon dioxide7.53E-05
26GO:0010027: thylakoid membrane organization8.60E-05
27GO:0010207: photosystem II assembly9.14E-05
28GO:0010190: cytochrome b6f complex assembly1.70E-04
29GO:0042549: photosystem II stabilization1.70E-04
30GO:0042742: defense response to bacterium2.38E-04
31GO:0010196: nonphotochemical quenching2.99E-04
32GO:0043489: RNA stabilization3.47E-04
33GO:1904966: positive regulation of vitamin E biosynthetic process3.47E-04
34GO:0010442: guard cell morphogenesis3.47E-04
35GO:0000481: maturation of 5S rRNA3.47E-04
36GO:0042547: cell wall modification involved in multidimensional cell growth3.47E-04
37GO:1904964: positive regulation of phytol biosynthetic process3.47E-04
38GO:0046166: glyceraldehyde-3-phosphate biosynthetic process3.47E-04
39GO:0042371: vitamin K biosynthetic process3.47E-04
40GO:1902458: positive regulation of stomatal opening3.47E-04
41GO:0034337: RNA folding3.47E-04
42GO:0071588: hydrogen peroxide mediated signaling pathway3.47E-04
43GO:0042335: cuticle development3.53E-04
44GO:0000413: protein peptidyl-prolyl isomerization3.53E-04
45GO:0045454: cell redox homeostasis4.15E-04
46GO:0055114: oxidation-reduction process4.26E-04
47GO:0009657: plastid organization4.61E-04
48GO:0006096: glycolytic process6.67E-04
49GO:0052541: plant-type cell wall cellulose metabolic process7.56E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process7.56E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process7.56E-04
52GO:0009073: aromatic amino acid family biosynthetic process8.76E-04
53GO:0043085: positive regulation of catalytic activity8.76E-04
54GO:0009773: photosynthetic electron transport in photosystem I8.76E-04
55GO:0018119: peptidyl-cysteine S-nitrosylation8.76E-04
56GO:0006006: glucose metabolic process1.13E-03
57GO:0006094: gluconeogenesis1.13E-03
58GO:0009767: photosynthetic electron transport chain1.13E-03
59GO:0019563: glycerol catabolic process1.22E-03
60GO:0010581: regulation of starch biosynthetic process1.22E-03
61GO:0006696: ergosterol biosynthetic process1.22E-03
62GO:2001295: malonyl-CoA biosynthetic process1.22E-03
63GO:0032504: multicellular organism reproduction1.22E-03
64GO:0010143: cutin biosynthetic process1.27E-03
65GO:0010020: chloroplast fission1.27E-03
66GO:0019253: reductive pentose-phosphate cycle1.27E-03
67GO:0010025: wax biosynthetic process1.59E-03
68GO:0006833: water transport1.59E-03
69GO:0009650: UV protection1.76E-03
70GO:0006241: CTP biosynthetic process1.76E-03
71GO:0006424: glutamyl-tRNA aminoacylation1.76E-03
72GO:1901332: negative regulation of lateral root development1.76E-03
73GO:0006165: nucleoside diphosphate phosphorylation1.76E-03
74GO:0006228: UTP biosynthetic process1.76E-03
75GO:0010088: phloem development1.76E-03
76GO:0055070: copper ion homeostasis1.76E-03
77GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.76E-03
78GO:2001141: regulation of RNA biosynthetic process1.76E-03
79GO:0019344: cysteine biosynthetic process1.76E-03
80GO:0061077: chaperone-mediated protein folding2.13E-03
81GO:0006183: GTP biosynthetic process2.37E-03
82GO:0045727: positive regulation of translation2.37E-03
83GO:0044206: UMP salvage2.37E-03
84GO:0006808: regulation of nitrogen utilization2.37E-03
85GO:0019464: glycine decarboxylation via glycine cleavage system2.37E-03
86GO:0009411: response to UV2.54E-03
87GO:0000304: response to singlet oxygen3.03E-03
88GO:0032543: mitochondrial translation3.03E-03
89GO:0006564: L-serine biosynthetic process3.03E-03
90GO:0045038: protein import into chloroplast thylakoid membrane3.03E-03
91GO:0043097: pyrimidine nucleoside salvage3.03E-03
92GO:0031365: N-terminal protein amino acid modification3.03E-03
93GO:0035434: copper ion transmembrane transport3.03E-03
94GO:0006461: protein complex assembly3.03E-03
95GO:0009107: lipoate biosynthetic process3.03E-03
96GO:0034220: ion transmembrane transport3.24E-03
97GO:0006457: protein folding3.30E-03
98GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.74E-03
99GO:0006206: pyrimidine nucleobase metabolic process3.74E-03
100GO:0000470: maturation of LSU-rRNA3.74E-03
101GO:0006555: methionine metabolic process3.74E-03
102GO:0042372: phylloquinone biosynthetic process4.50E-03
103GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.50E-03
104GO:1901259: chloroplast rRNA processing4.50E-03
105GO:0009854: oxidative photosynthetic carbon pathway4.50E-03
106GO:0010019: chloroplast-nucleus signaling pathway4.50E-03
107GO:0010555: response to mannitol4.50E-03
108GO:0009955: adaxial/abaxial pattern specification4.50E-03
109GO:0030497: fatty acid elongation5.32E-03
110GO:0006400: tRNA modification5.32E-03
111GO:0009610: response to symbiotic fungus5.32E-03
112GO:0030091: protein repair6.17E-03
113GO:0008610: lipid biosynthetic process6.17E-03
114GO:0009642: response to light intensity6.17E-03
115GO:0032508: DNA duplex unwinding6.17E-03
116GO:2000070: regulation of response to water deprivation6.17E-03
117GO:0007155: cell adhesion6.17E-03
118GO:0019430: removal of superoxide radicals7.08E-03
119GO:0007186: G-protein coupled receptor signaling pathway7.08E-03
120GO:0009932: cell tip growth7.08E-03
121GO:0071482: cellular response to light stimulus7.08E-03
122GO:0015996: chlorophyll catabolic process7.08E-03
123GO:0010411: xyloglucan metabolic process7.35E-03
124GO:0015995: chlorophyll biosynthetic process7.35E-03
125GO:0009051: pentose-phosphate shunt, oxidative branch8.04E-03
126GO:0010206: photosystem II repair8.04E-03
127GO:0006098: pentose-phosphate shunt8.04E-03
128GO:0009817: defense response to fungus, incompatible interaction8.14E-03
129GO:0018298: protein-chromophore linkage8.14E-03
130GO:0035999: tetrahydrofolate interconversion9.03E-03
131GO:0042761: very long-chain fatty acid biosynthetic process9.03E-03
132GO:0010380: regulation of chlorophyll biosynthetic process9.03E-03
133GO:0010119: regulation of stomatal movement9.43E-03
134GO:0009631: cold acclimation9.43E-03
135GO:0009870: defense response signaling pathway, resistance gene-dependent1.01E-02
136GO:0006535: cysteine biosynthetic process from serine1.01E-02
137GO:0043069: negative regulation of programmed cell death1.01E-02
138GO:0009637: response to blue light1.03E-02
139GO:0034599: cellular response to oxidative stress1.08E-02
140GO:0019684: photosynthesis, light reaction1.12E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
142GO:0006352: DNA-templated transcription, initiation1.12E-02
143GO:0000272: polysaccharide catabolic process1.12E-02
144GO:0006415: translational termination1.12E-02
145GO:0000038: very long-chain fatty acid metabolic process1.12E-02
146GO:0030001: metal ion transport1.18E-02
147GO:0016024: CDP-diacylglycerol biosynthetic process1.23E-02
148GO:0045037: protein import into chloroplast stroma1.23E-02
149GO:0006790: sulfur compound metabolic process1.23E-02
150GO:0010114: response to red light1.34E-02
151GO:0042546: cell wall biogenesis1.39E-02
152GO:0009793: embryo development ending in seed dormancy1.57E-02
153GO:0046854: phosphatidylinositol phosphorylation1.59E-02
154GO:0006810: transport1.67E-02
155GO:0006071: glycerol metabolic process1.71E-02
156GO:0000027: ribosomal large subunit assembly1.85E-02
157GO:0009116: nucleoside metabolic process1.85E-02
158GO:0010026: trichome differentiation1.98E-02
159GO:0009768: photosynthesis, light harvesting in photosystem I1.98E-02
160GO:0031408: oxylipin biosynthetic process2.12E-02
161GO:0009814: defense response, incompatible interaction2.26E-02
162GO:0006730: one-carbon metabolic process2.26E-02
163GO:0009416: response to light stimulus2.34E-02
164GO:0016117: carotenoid biosynthetic process2.70E-02
165GO:0042631: cellular response to water deprivation2.85E-02
166GO:0080022: primary root development2.85E-02
167GO:0006662: glycerol ether metabolic process3.01E-02
168GO:0010182: sugar mediated signaling pathway3.01E-02
169GO:0048868: pollen tube development3.01E-02
170GO:0006869: lipid transport3.14E-02
171GO:0007018: microtubule-based movement3.17E-02
172GO:0071554: cell wall organization or biogenesis3.50E-02
173GO:0000302: response to reactive oxygen species3.50E-02
174GO:0016132: brassinosteroid biosynthetic process3.50E-02
175GO:0042744: hydrogen peroxide catabolic process3.66E-02
176GO:0010583: response to cyclopentenone3.67E-02
177GO:0032502: developmental process3.67E-02
178GO:0009790: embryo development3.76E-02
179GO:1901657: glycosyl compound metabolic process3.84E-02
180GO:0006413: translational initiation4.14E-02
181GO:0071805: potassium ion transmembrane transport4.19E-02
182GO:0045490: pectin catabolic process4.43E-02
183GO:0009451: RNA modification4.53E-02
184GO:0016126: sterol biosynthetic process4.55E-02
185GO:0001666: response to hypoxia4.55E-02
186GO:0009627: systemic acquired resistance4.91E-02
187GO:0042128: nitrate assimilation4.91E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
3GO:0008887: glycerate kinase activity0.00E+00
4GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
10GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
11GO:0019843: rRNA binding3.72E-24
12GO:0003735: structural constituent of ribosome7.59E-16
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.70E-09
14GO:0051920: peroxiredoxin activity4.72E-06
15GO:0016209: antioxidant activity1.14E-05
16GO:0004089: carbonate dehydratase activity7.58E-05
17GO:0009922: fatty acid elongase activity1.18E-04
18GO:0005528: FK506 binding1.50E-04
19GO:0004807: triose-phosphate isomerase activity3.47E-04
20GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.47E-04
21GO:0009496: plastoquinol--plastocyanin reductase activity3.47E-04
22GO:0080132: fatty acid alpha-hydroxylase activity3.47E-04
23GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.47E-04
24GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.47E-04
25GO:0051996: squalene synthase activity3.47E-04
26GO:0000248: C-5 sterol desaturase activity3.47E-04
27GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.56E-04
28GO:0004802: transketolase activity7.56E-04
29GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.56E-04
30GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.56E-04
31GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.56E-04
32GO:0050017: L-3-cyanoalanine synthase activity7.56E-04
33GO:0010297: heteropolysaccharide binding7.56E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.56E-04
35GO:0004047: aminomethyltransferase activity7.56E-04
36GO:0008047: enzyme activator activity7.61E-04
37GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.22E-03
38GO:0016531: copper chaperone activity1.22E-03
39GO:0019829: cation-transporting ATPase activity1.22E-03
40GO:0017150: tRNA dihydrouridine synthase activity1.22E-03
41GO:0050734: hydroxycinnamoyltransferase activity1.22E-03
42GO:0016992: lipoate synthase activity1.22E-03
43GO:0004148: dihydrolipoyl dehydrogenase activity1.22E-03
44GO:0004075: biotin carboxylase activity1.22E-03
45GO:0030267: glyoxylate reductase (NADP) activity1.22E-03
46GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.22E-03
47GO:0008266: poly(U) RNA binding1.27E-03
48GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.59E-03
49GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.59E-03
50GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.59E-03
51GO:0004375: glycine dehydrogenase (decarboxylating) activity1.76E-03
52GO:0016149: translation release factor activity, codon specific1.76E-03
53GO:0004550: nucleoside diphosphate kinase activity1.76E-03
54GO:0043023: ribosomal large subunit binding1.76E-03
55GO:0008097: 5S rRNA binding1.76E-03
56GO:0015079: potassium ion transmembrane transporter activity1.94E-03
57GO:0051537: 2 iron, 2 sulfur cluster binding2.35E-03
58GO:0016987: sigma factor activity2.37E-03
59GO:0043495: protein anchor2.37E-03
60GO:0001053: plastid sigma factor activity2.37E-03
61GO:0004845: uracil phosphoribosyltransferase activity2.37E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity2.37E-03
63GO:0016836: hydro-lyase activity2.37E-03
64GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.37E-03
65GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.37E-03
66GO:0030570: pectate lyase activity2.54E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor3.03E-03
68GO:0003989: acetyl-CoA carboxylase activity3.03E-03
69GO:0016208: AMP binding3.74E-03
70GO:0004130: cytochrome-c peroxidase activity3.74E-03
71GO:0016688: L-ascorbate peroxidase activity3.74E-03
72GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.74E-03
73GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.74E-03
74GO:0004332: fructose-bisphosphate aldolase activity3.74E-03
75GO:0050662: coenzyme binding3.75E-03
76GO:0004791: thioredoxin-disulfide reductase activity3.75E-03
77GO:0016762: xyloglucan:xyloglucosyl transferase activity4.31E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.50E-03
79GO:0004849: uridine kinase activity4.50E-03
80GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.50E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.50E-03
82GO:0004124: cysteine synthase activity4.50E-03
83GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.91E-03
84GO:0019899: enzyme binding5.32E-03
85GO:0004620: phospholipase activity5.32E-03
86GO:0008235: metalloexopeptidase activity5.32E-03
87GO:0003729: mRNA binding6.12E-03
88GO:0052747: sinapyl alcohol dehydrogenase activity6.17E-03
89GO:0004033: aldo-keto reductase (NADP) activity6.17E-03
90GO:0015250: water channel activity6.23E-03
91GO:0016168: chlorophyll binding6.59E-03
92GO:0005375: copper ion transmembrane transporter activity7.08E-03
93GO:0016798: hydrolase activity, acting on glycosyl bonds7.35E-03
94GO:0008889: glycerophosphodiester phosphodiesterase activity8.04E-03
95GO:0003747: translation release factor activity8.04E-03
96GO:0016740: transferase activity9.85E-03
97GO:0015386: potassium:proton antiporter activity1.12E-02
98GO:0004177: aminopeptidase activity1.12E-02
99GO:0047372: acylglycerol lipase activity1.12E-02
100GO:0050661: NADP binding1.18E-02
101GO:0045551: cinnamyl-alcohol dehydrogenase activity1.23E-02
102GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.34E-02
103GO:0031072: heat shock protein binding1.34E-02
104GO:0016491: oxidoreductase activity1.36E-02
105GO:0051287: NAD binding1.62E-02
106GO:0004601: peroxidase activity1.70E-02
107GO:0031409: pigment binding1.71E-02
108GO:0005509: calcium ion binding2.05E-02
109GO:0019706: protein-cysteine S-palmitoyltransferase activity2.12E-02
110GO:0003723: RNA binding2.13E-02
111GO:0046872: metal ion binding2.24E-02
112GO:0022891: substrate-specific transmembrane transporter activity2.40E-02
113GO:0052689: carboxylic ester hydrolase activity2.54E-02
114GO:0003727: single-stranded RNA binding2.55E-02
115GO:0016746: transferase activity, transferring acyl groups2.65E-02
116GO:0047134: protein-disulfide reductase activity2.70E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.52E-02
118GO:0016791: phosphatase activity4.01E-02
119GO:0008483: transaminase activity4.19E-02
120GO:0016722: oxidoreductase activity, oxidizing metal ions4.19E-02
121GO:0016597: amino acid binding4.36E-02
122GO:0016413: O-acetyltransferase activity4.36E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast2.76E-67
4GO:0009570: chloroplast stroma1.54E-57
5GO:0009941: chloroplast envelope8.95E-51
6GO:0009535: chloroplast thylakoid membrane3.01E-30
7GO:0009579: thylakoid4.81E-30
8GO:0009543: chloroplast thylakoid lumen8.20E-21
9GO:0031977: thylakoid lumen3.64E-19
10GO:0005840: ribosome6.66E-19
11GO:0009534: chloroplast thylakoid7.97E-18
12GO:0009654: photosystem II oxygen evolving complex3.46E-09
13GO:0016020: membrane5.65E-08
14GO:0048046: apoplast6.06E-08
15GO:0019898: extrinsic component of membrane1.54E-06
16GO:0030095: chloroplast photosystem II2.97E-06
17GO:0010319: stromule3.68E-06
18GO:0046658: anchored component of plasma membrane1.53E-05
19GO:0031969: chloroplast membrane4.69E-05
20GO:0042651: thylakoid membrane1.73E-04
21GO:0009533: chloroplast stromal thylakoid2.99E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.47E-04
23GO:0009547: plastid ribosome3.47E-04
24GO:0009523: photosystem II4.70E-04
25GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.52E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex7.56E-04
27GO:0000311: plastid large ribosomal subunit1.00E-03
28GO:0010287: plastoglobule1.14E-03
29GO:0009528: plastid inner membrane1.22E-03
30GO:0000312: plastid small ribosomal subunit1.27E-03
31GO:0015934: large ribosomal subunit1.37E-03
32GO:0031225: anchored component of membrane1.45E-03
33GO:0005960: glycine cleavage complex1.76E-03
34GO:0022626: cytosolic ribosome1.81E-03
35GO:0009532: plastid stroma2.13E-03
36GO:0009527: plastid outer membrane2.37E-03
37GO:0009512: cytochrome b6f complex3.03E-03
38GO:0009536: plastid4.03E-03
39GO:0009539: photosystem II reaction center7.08E-03
40GO:0005763: mitochondrial small ribosomal subunit8.04E-03
41GO:0009505: plant-type cell wall1.23E-02
42GO:0032040: small-subunit processome1.23E-02
43GO:0030659: cytoplasmic vesicle membrane1.46E-02
44GO:0030076: light-harvesting complex1.59E-02
45GO:0043234: protein complex1.71E-02
46GO:0015935: small ribosomal subunit2.12E-02
47GO:0022625: cytosolic large ribosomal subunit2.38E-02
48GO:0009706: chloroplast inner membrane2.57E-02
49GO:0005871: kinesin complex2.70E-02
50GO:0005777: peroxisome2.87E-02
51GO:0009522: photosystem I3.17E-02
52GO:0005759: mitochondrial matrix4.04E-02
53GO:0005778: peroxisomal membrane4.19E-02
54GO:0030529: intracellular ribonucleoprotein complex4.55E-02
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Gene type



Gene DE type