co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	6.23E-09
6	GO:0015979: photosynthesis	1.30E-08
7	GO:0010196: nonphotochemical quenching	3.36E-08
8	GO:0009735: response to cytokinin	4.20E-06
9	GO:0032544: plastid translation	8.96E-06
10	GO:0090391: granum assembly	1.22E-05
11	GO:0010027: thylakoid membrane organization	4.40E-05
12	GO:0018298: protein-chromophore linkage	7.32E-05
13	GO:0016120: carotene biosynthetic process	7.90E-05
14	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.15E-04
15	GO:0006869: lipid transport	2.34E-04
16	GO:0006810: transport	2.53E-04
17	GO:0071588: hydrogen peroxide mediated signaling pathway	2.72E-04
18	GO:0070509: calcium ion import	2.72E-04
19	GO:0043953: protein transport by the Tat complex	2.72E-04
20	GO:0007263: nitric oxide mediated signal transduction	2.72E-04
21	GO:0043489: RNA stabilization	2.72E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	2.72E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	2.72E-04
24	GO:0065002: intracellular protein transmembrane transport	2.72E-04
25	GO:0043686: co-translational protein modification	2.72E-04
26	GO:0009658: chloroplast organization	4.66E-04
27	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.99E-04
28	GO:0010289: homogalacturonan biosynthetic process	5.99E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.99E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.99E-04
31	GO:0043255: regulation of carbohydrate biosynthetic process	5.99E-04
32	GO:0080005: photosystem stoichiometry adjustment	5.99E-04
33	GO:0010115: regulation of abscisic acid biosynthetic process	5.99E-04
34	GO:0034755: iron ion transmembrane transport	5.99E-04
35	GO:0006094: gluconeogenesis	8.06E-04
36	GO:0006000: fructose metabolic process	9.72E-04
37	GO:0006954: inflammatory response	9.72E-04
38	GO:0006518: peptide metabolic process	9.72E-04
39	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	9.72E-04
40	GO:0006833: water transport	1.12E-03
41	GO:0010025: wax biosynthetic process	1.12E-03
42	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-03
43	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.39E-03
44	GO:0080170: hydrogen peroxide transmembrane transport	1.39E-03
45	GO:2001141: regulation of RNA biosynthetic process	1.39E-03
46	GO:0031408: oxylipin biosynthetic process	1.50E-03
47	GO:0016998: cell wall macromolecule catabolic process	1.50E-03
48	GO:0009765: photosynthesis, light harvesting	1.86E-03
49	GO:0006109: regulation of carbohydrate metabolic process	1.86E-03
50	GO:0045727: positive regulation of translation	1.86E-03
51	GO:0015994: chlorophyll metabolic process	1.86E-03
52	GO:0031122: cytoplasmic microtubule organization	1.86E-03
53	GO:0042335: cuticle development	2.27E-03
54	GO:0034220: ion transmembrane transport	2.27E-03
55	GO:0006461: protein complex assembly	2.37E-03
56	GO:0006564: L-serine biosynthetic process	2.37E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	2.37E-03
58	GO:0031365: N-terminal protein amino acid modification	2.37E-03
59	GO:0006096: glycolytic process	2.44E-03
60	GO:0048827: phyllome development	2.93E-03
61	GO:0042549: photosystem II stabilization	2.93E-03
62	GO:0000470: maturation of LSU-rRNA	2.93E-03
63	GO:0016554: cytidine to uridine editing	2.93E-03
64	GO:0006655: phosphatidylglycerol biosynthetic process	2.93E-03
65	GO:0010190: cytochrome b6f complex assembly	2.93E-03
66	GO:0010337: regulation of salicylic acid metabolic process	2.93E-03
67	GO:0006561: proline biosynthetic process	2.93E-03
68	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.52E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	3.52E-03
70	GO:0009395: phospholipid catabolic process	4.15E-03
71	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.15E-03
72	GO:1900057: positive regulation of leaf senescence	4.15E-03
73	GO:0009645: response to low light intensity stimulus	4.15E-03
74	GO:0006400: tRNA modification	4.15E-03
75	GO:0015693: magnesium ion transport	4.15E-03
76	GO:0008610: lipid biosynthetic process	4.82E-03
77	GO:0009642: response to light intensity	4.82E-03
78	GO:0015995: chlorophyll biosynthetic process	5.13E-03
79	GO:0006002: fructose 6-phosphate metabolic process	5.52E-03
80	GO:0071482: cellular response to light stimulus	5.52E-03
81	GO:0009657: plastid organization	5.52E-03
82	GO:0055085: transmembrane transport	5.63E-03
83	GO:0030244: cellulose biosynthetic process	5.68E-03
84	GO:0006629: lipid metabolic process	5.73E-03
85	GO:0009051: pentose-phosphate shunt, oxidative branch	6.25E-03
86	GO:0006098: pentose-phosphate shunt	6.25E-03
87	GO:0000373: Group II intron splicing	6.25E-03
88	GO:0009631: cold acclimation	6.57E-03
89	GO:0008152: metabolic process	6.64E-03
90	GO:0010205: photoinhibition	7.03E-03
91	GO:0042761: very long-chain fatty acid biosynthetic process	7.03E-03
92	GO:1900865: chloroplast RNA modification	7.03E-03
93	GO:0009637: response to blue light	7.20E-03
94	GO:0034599: cellular response to oxidative stress	7.53E-03
95	GO:0019538: protein metabolic process	7.82E-03
96	GO:0006032: chitin catabolic process	7.82E-03
97	GO:0009688: abscisic acid biosynthetic process	7.82E-03
98	GO:0009073: aromatic amino acid family biosynthetic process	8.66E-03
99	GO:0043085: positive regulation of catalytic activity	8.66E-03
100	GO:0006415: translational termination	8.66E-03
101	GO:0006879: cellular iron ion homeostasis	8.66E-03
102	GO:0006352: DNA-templated transcription, initiation	8.66E-03
103	GO:0009750: response to fructose	8.66E-03
104	GO:0010114: response to red light	9.30E-03
105	GO:0016024: CDP-diacylglycerol biosynthetic process	9.52E-03
106	GO:0009644: response to high light intensity	1.01E-02
107	GO:0009718: anthocyanin-containing compound biosynthetic process	1.04E-02
108	GO:0009767: photosynthetic electron transport chain	1.04E-02
109	GO:0005986: sucrose biosynthetic process	1.04E-02
110	GO:0010628: positive regulation of gene expression	1.04E-02
111	GO:0006006: glucose metabolic process	1.04E-02
112	GO:0010229: inflorescence development	1.04E-02
113	GO:0010540: basipetal auxin transport	1.13E-02
114	GO:0010143: cutin biosynthetic process	1.13E-02
115	GO:0019253: reductive pentose-phosphate cycle	1.13E-02
116	GO:0055114: oxidation-reduction process	1.19E-02
117	GO:0010053: root epidermal cell differentiation	1.23E-02
118	GO:0009825: multidimensional cell growth	1.23E-02
119	GO:0010167: response to nitrate	1.23E-02
120	GO:0005985: sucrose metabolic process	1.23E-02
121	GO:0071732: cellular response to nitric oxide	1.23E-02
122	GO:0009809: lignin biosynthetic process	1.26E-02
123	GO:0006636: unsaturated fatty acid biosynthetic process	1.33E-02
124	GO:0009416: response to light stimulus	1.37E-02
125	GO:0080167: response to karrikin	1.42E-02
126	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.48E-02
127	GO:0007017: microtubule-based process	1.53E-02
128	GO:0009695: jasmonic acid biosynthetic process	1.53E-02
129	GO:0016226: iron-sulfur cluster assembly	1.75E-02
130	GO:0035428: hexose transmembrane transport	1.75E-02
131	GO:0071369: cellular response to ethylene stimulus	1.86E-02
132	GO:0016117: carotenoid biosynthetic process	2.09E-02
133	GO:0009409: response to cold	2.13E-02
134	GO:0042391: regulation of membrane potential	2.21E-02
135	GO:0000413: protein peptidyl-prolyl isomerization	2.21E-02
136	GO:0009408: response to heat	2.32E-02
137	GO:0046323: glucose import	2.33E-02
138	GO:0006662: glycerol ether metabolic process	2.33E-02
139	GO:0010182: sugar mediated signaling pathway	2.33E-02
140	GO:0006397: mRNA processing	2.45E-02
141	GO:0042744: hydrogen peroxide catabolic process	2.56E-02
142	GO:0005975: carbohydrate metabolic process	2.58E-02
143	GO:0048825: cotyledon development	2.58E-02
144	GO:0008654: phospholipid biosynthetic process	2.58E-02
145	GO:0071554: cell wall organization or biogenesis	2.71E-02
146	GO:0000302: response to reactive oxygen species	2.71E-02
147	GO:0071281: cellular response to iron ion	2.97E-02
148	GO:0009567: double fertilization forming a zygote and endosperm	3.10E-02
149	GO:0007623: circadian rhythm	3.10E-02
150	GO:0009911: positive regulation of flower development	3.52E-02
151	GO:0001666: response to hypoxia	3.52E-02
152	GO:0009607: response to biotic stimulus	3.66E-02
153	GO:0042128: nitrate assimilation	3.80E-02
154	GO:0010411: xyloglucan metabolic process	3.95E-02
155	GO:0000160: phosphorelay signal transduction system	4.40E-02
156	GO:0009407: toxin catabolic process	4.55E-02
157	GO:0010218: response to far red light	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0045436: lycopene beta cyclase activity	0.00E+00
4	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
8	GO:0016168: chlorophyll binding	4.91E-05
9	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	4.98E-05
10	GO:0019843: rRNA binding	1.06E-04
11	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.72E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	2.72E-04
13	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.72E-04
14	GO:0009496: plastoquinol--plastocyanin reductase activity	2.72E-04
15	GO:0008568: microtubule-severing ATPase activity	2.72E-04
16	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	2.72E-04
17	GO:0042586: peptide deformylase activity	2.72E-04
18	GO:0004321: fatty-acyl-CoA synthase activity	2.72E-04
19	GO:0004328: formamidase activity	2.72E-04
20	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.99E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	5.99E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.99E-04
23	GO:0008805: carbon-monoxide oxygenase activity	5.99E-04
24	GO:0008967: phosphoglycolate phosphatase activity	5.99E-04
25	GO:0047746: chlorophyllase activity	5.99E-04
26	GO:0008289: lipid binding	6.00E-04
27	GO:0004565: beta-galactosidase activity	8.06E-04
28	GO:0008081: phosphoric diester hydrolase activity	8.06E-04
29	GO:0004022: alcohol dehydrogenase (NAD) activity	8.06E-04
30	GO:0008266: poly(U) RNA binding	9.06E-04
31	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.72E-04
32	GO:0031409: pigment binding	1.12E-03
33	GO:0001872: (1->3)-beta-D-glucan binding	1.39E-03
34	GO:0016851: magnesium chelatase activity	1.39E-03
35	GO:0016149: translation release factor activity, codon specific	1.39E-03
36	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.39E-03
37	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.39E-03
38	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.64E-03
39	GO:0022891: substrate-specific transmembrane transporter activity	1.79E-03
40	GO:0001053: plastid sigma factor activity	1.86E-03
41	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.86E-03
42	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.86E-03
43	GO:0004045: aminoacyl-tRNA hydrolase activity	1.86E-03
44	GO:0016987: sigma factor activity	1.86E-03
45	GO:0043495: protein anchor	1.86E-03
46	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.86E-03
47	GO:0004332: fructose-bisphosphate aldolase activity	2.93E-03
48	GO:0004130: cytochrome-c peroxidase activity	2.93E-03
49	GO:0042578: phosphoric ester hydrolase activity	2.93E-03
50	GO:0016688: L-ascorbate peroxidase activity	2.93E-03
51	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.93E-03
52	GO:0005242: inward rectifier potassium channel activity	3.52E-03
53	GO:0005261: cation channel activity	3.52E-03
54	GO:0016597: amino acid binding	4.12E-03
55	GO:0019899: enzyme binding	4.15E-03
56	GO:0004620: phospholipase activity	4.15E-03
57	GO:0015250: water channel activity	4.36E-03
58	GO:0008312: 7S RNA binding	4.82E-03
59	GO:0052747: sinapyl alcohol dehydrogenase activity	4.82E-03
60	GO:0004033: aldo-keto reductase (NADP) activity	4.82E-03
61	GO:0030247: polysaccharide binding	5.13E-03
62	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.52E-03
63	GO:0003747: translation release factor activity	6.25E-03
64	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.25E-03
65	GO:0016207: 4-coumarate-CoA ligase activity	6.25E-03
66	GO:0005381: iron ion transmembrane transporter activity	7.03E-03
67	GO:0004568: chitinase activity	7.82E-03
68	GO:0008047: enzyme activator activity	7.82E-03
69	GO:0047372: acylglycerol lipase activity	8.66E-03
70	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.52E-03
71	GO:0015095: magnesium ion transmembrane transporter activity	1.04E-02
72	GO:0031072: heat shock protein binding	1.04E-02
73	GO:0005262: calcium channel activity	1.04E-02
74	GO:0016788: hydrolase activity, acting on ester bonds	1.10E-02
75	GO:0030552: cAMP binding	1.23E-02
76	GO:0030553: cGMP binding	1.23E-02
77	GO:0051536: iron-sulfur cluster binding	1.43E-02
78	GO:0004857: enzyme inhibitor activity	1.43E-02
79	GO:0005528: FK506 binding	1.43E-02
80	GO:0005215: transporter activity	1.51E-02
81	GO:0043424: protein histidine kinase binding	1.53E-02
82	GO:0005216: ion channel activity	1.53E-02
83	GO:0004176: ATP-dependent peptidase activity	1.64E-02
84	GO:0016874: ligase activity	1.69E-02
85	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.75E-02
86	GO:0016746: transferase activity, transferring acyl groups	1.85E-02
87	GO:0004871: signal transducer activity	1.89E-02
88	GO:0047134: protein-disulfide reductase activity	2.09E-02
89	GO:0030551: cyclic nucleotide binding	2.21E-02
90	GO:0004791: thioredoxin-disulfide reductase activity	2.45E-02
91	GO:0005355: glucose transmembrane transporter activity	2.45E-02
92	GO:0050662: coenzyme binding	2.45E-02
93	GO:0048038: quinone binding	2.71E-02
94	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.71E-02
95	GO:0000156: phosphorelay response regulator activity	2.97E-02
96	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-02
97	GO:0016759: cellulose synthase activity	3.10E-02
98	GO:0016791: phosphatase activity	3.10E-02
99	GO:0008483: transaminase activity	3.24E-02
100	GO:0005200: structural constituent of cytoskeleton	3.24E-02
101	GO:0016413: O-acetyltransferase activity	3.38E-02
102	GO:0046872: metal ion binding	3.86E-02
103	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.93E-02
104	GO:0042802: identical protein binding	3.93E-02
105	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.95E-02
106	GO:0015238: drug transmembrane transporter activity	4.40E-02
107	GO:0004222: metalloendopeptidase activity	4.55E-02
108	GO:0016787: hydrolase activity	4.55E-02
109	GO:0008168: methyltransferase activity	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009575: chromoplast stroma	0.00E+00
4	GO:0009515: granal stacked thylakoid	0.00E+00
5	GO:0009507: chloroplast	6.24E-39
6	GO:0009535: chloroplast thylakoid membrane	7.26E-23
7	GO:0009570: chloroplast stroma	8.31E-19
8	GO:0009941: chloroplast envelope	1.42E-16
9	GO:0009534: chloroplast thylakoid	4.47E-13
10	GO:0009579: thylakoid	1.16E-09
11	GO:0009543: chloroplast thylakoid lumen	9.76E-06
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.25E-05
13	GO:0046658: anchored component of plasma membrane	5.03E-05
14	GO:0042651: thylakoid membrane	1.04E-04
15	GO:0031969: chloroplast membrane	1.26E-04
16	GO:0031977: thylakoid lumen	1.54E-04
17	GO:0009533: chloroplast stromal thylakoid	2.07E-04
18	GO:0031361: integral component of thylakoid membrane	2.72E-04
19	GO:0009782: photosystem I antenna complex	2.72E-04
20	GO:0009523: photosystem II	2.95E-04
21	GO:0016021: integral component of membrane	5.20E-04
22	GO:0030529: intracellular ribonucleoprotein complex	5.23E-04
23	GO:0080085: signal recognition particle, chloroplast targeting	5.99E-04
24	GO:0010007: magnesium chelatase complex	9.72E-04
25	GO:0033281: TAT protein transport complex	9.72E-04
26	GO:0030076: light-harvesting complex	1.01E-03
27	GO:0015630: microtubule cytoskeleton	1.39E-03
28	GO:0009512: cytochrome b6f complex	2.37E-03
29	GO:0048046: apoplast	2.78E-03
30	GO:0016020: membrane	3.66E-03
31	GO:0010287: plastoglobule	3.83E-03
32	GO:0005886: plasma membrane	5.34E-03
33	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.52E-03
34	GO:0008180: COP9 signalosome	6.25E-03
35	GO:0031225: anchored component of membrane	8.06E-03
36	GO:0030095: chloroplast photosystem II	1.13E-02
37	GO:0000312: plastid small ribosomal subunit	1.13E-02
38	GO:0009654: photosystem II oxygen evolving complex	1.53E-02
39	GO:0015935: small ribosomal subunit	1.64E-02
40	GO:0005770: late endosome	2.33E-02
41	GO:0009522: photosystem I	2.45E-02
42	GO:0019898: extrinsic component of membrane	2.58E-02
43	GO:0010319: stromule	3.24E-02
44	GO:0005887: integral component of plasma membrane	3.40E-02
45	GO:0019005: SCF ubiquitin ligase complex	4.25E-02
46	GO:0015934: large ribosomal subunit	4.71E-02