Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002764: immune response-regulating signaling pathway0.00E+00
2GO:0000162: tryptophan biosynthetic process1.78E-06
3GO:0006643: membrane lipid metabolic process5.18E-05
4GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.96E-05
5GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.27E-04
6GO:0060151: peroxisome localization1.27E-04
7GO:0000737: DNA catabolic process, endonucleolytic1.27E-04
8GO:0080185: effector dependent induction by symbiont of host immune response1.27E-04
9GO:0051645: Golgi localization1.27E-04
10GO:0016045: detection of bacterium2.17E-04
11GO:0010359: regulation of anion channel activity2.17E-04
12GO:0090436: leaf pavement cell development2.17E-04
13GO:0000706: meiotic DNA double-strand break processing2.17E-04
14GO:0051646: mitochondrion localization2.17E-04
15GO:0048830: adventitious root development4.24E-04
16GO:0010600: regulation of auxin biosynthetic process4.24E-04
17GO:0006904: vesicle docking involved in exocytosis4.31E-04
18GO:0009816: defense response to bacterium, incompatible interaction5.10E-04
19GO:0009957: epidermal cell fate specification5.39E-04
20GO:0034052: positive regulation of plant-type hypersensitive response5.39E-04
21GO:0042138: meiotic DNA double-strand break formation6.60E-04
22GO:0009759: indole glucosinolate biosynthetic process6.60E-04
23GO:0010044: response to aluminum ion9.18E-04
24GO:0046470: phosphatidylcholine metabolic process9.18E-04
25GO:0006887: exocytosis9.22E-04
26GO:0030162: regulation of proteolysis1.06E-03
27GO:0006875: cellular metal ion homeostasis1.06E-03
28GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.19E-03
29GO:0010204: defense response signaling pathway, resistance gene-independent1.20E-03
30GO:2000031: regulation of salicylic acid mediated signaling pathway1.20E-03
31GO:0009626: plant-type hypersensitive response1.65E-03
32GO:0009641: shade avoidance1.67E-03
33GO:0006259: DNA metabolic process1.67E-03
34GO:0006265: DNA topological change1.84E-03
35GO:0009684: indoleacetic acid biosynthetic process1.84E-03
36GO:0009698: phenylpropanoid metabolic process1.84E-03
37GO:0009682: induced systemic resistance1.84E-03
38GO:0052544: defense response by callose deposition in cell wall1.84E-03
39GO:0071365: cellular response to auxin stimulus2.01E-03
40GO:0000266: mitochondrial fission2.01E-03
41GO:0030048: actin filament-based movement2.19E-03
42GO:0006468: protein phosphorylation2.30E-03
43GO:0048467: gynoecium development2.38E-03
44GO:0009969: xyloglucan biosynthetic process2.56E-03
45GO:0080188: RNA-directed DNA methylation2.56E-03
46GO:0009611: response to wounding2.73E-03
47GO:0080147: root hair cell development2.96E-03
48GO:0009863: salicylic acid mediated signaling pathway2.96E-03
49GO:0009695: jasmonic acid biosynthetic process3.16E-03
50GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.56E-03
51GO:0007131: reciprocal meiotic recombination3.59E-03
52GO:2000022: regulation of jasmonic acid mediated signaling pathway3.59E-03
53GO:0035428: hexose transmembrane transport3.59E-03
54GO:0009617: response to bacterium3.79E-03
55GO:0006012: galactose metabolic process3.80E-03
56GO:0006885: regulation of pH4.72E-03
57GO:0046323: glucose import4.72E-03
58GO:0009851: auxin biosynthetic process5.21E-03
59GO:0010090: trichome morphogenesis5.97E-03
60GO:0050832: defense response to fungus6.41E-03
61GO:0042742: defense response to bacterium6.48E-03
62GO:0009788: negative regulation of abscisic acid-activated signaling pathway7.31E-03
63GO:0006886: intracellular protein transport7.50E-03
64GO:0009627: systemic acquired resistance7.59E-03
65GO:0009817: defense response to fungus, incompatible interaction8.46E-03
66GO:0010311: lateral root formation8.76E-03
67GO:0048767: root hair elongation8.76E-03
68GO:0009813: flavonoid biosynthetic process8.76E-03
69GO:0006499: N-terminal protein myristoylation9.06E-03
70GO:0045087: innate immune response9.99E-03
71GO:0006099: tricarboxylic acid cycle1.03E-02
72GO:0006897: endocytosis1.13E-02
73GO:0010114: response to red light1.19E-02
74GO:0000209: protein polyubiquitination1.23E-02
75GO:0031347: regulation of defense response1.37E-02
76GO:0006812: cation transport1.40E-02
77GO:0006813: potassium ion transport1.47E-02
78GO:0009620: response to fungus1.77E-02
79GO:0016569: covalent chromatin modification1.81E-02
80GO:0006508: proteolysis2.68E-02
81GO:0040008: regulation of growth2.70E-02
82GO:0010150: leaf senescence2.79E-02
83GO:0006470: protein dephosphorylation3.07E-02
84GO:0006979: response to oxidative stress3.26E-02
85GO:0007049: cell cycle4.12E-02
86GO:0009723: response to ethylene4.23E-02
87GO:0016192: vesicle-mediated transport4.60E-02
88GO:0046777: protein autophosphorylation4.66E-02
RankGO TermAdjusted P value
1GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity5.18E-05
2GO:1901149: salicylic acid binding5.18E-05
3GO:0005524: ATP binding5.20E-05
4GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.84E-05
5GO:0030742: GTP-dependent protein binding1.27E-04
6GO:0016889: endodeoxyribonuclease activity, producing 3'-phosphomonoesters1.27E-04
7GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.17E-04
8GO:0004383: guanylate cyclase activity2.17E-04
9GO:0004049: anthranilate synthase activity2.17E-04
10GO:0001653: peptide receptor activity3.17E-04
11GO:0004834: tryptophan synthase activity4.24E-04
12GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor4.24E-04
13GO:0019199: transmembrane receptor protein kinase activity4.24E-04
14GO:0017137: Rab GTPase binding5.39E-04
15GO:0045431: flavonol synthase activity5.39E-04
16GO:0005546: phosphatidylinositol-4,5-bisphosphate binding5.39E-04
17GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.87E-04
18GO:0004012: phospholipid-translocating ATPase activity7.87E-04
19GO:0004674: protein serine/threonine kinase activity9.46E-04
20GO:0004034: aldose 1-epimerase activity1.06E-03
21GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.20E-03
22GO:0004630: phospholipase D activity1.20E-03
23GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity1.20E-03
24GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.35E-03
25GO:0005515: protein binding1.35E-03
26GO:0016207: 4-coumarate-CoA ligase activity1.35E-03
27GO:0004713: protein tyrosine kinase activity1.67E-03
28GO:0003774: motor activity2.38E-03
29GO:0004725: protein tyrosine phosphatase activity2.76E-03
30GO:0005451: monovalent cation:proton antiporter activity4.49E-03
31GO:0000287: magnesium ion binding4.82E-03
32GO:0005355: glucose transmembrane transporter activity4.96E-03
33GO:0015299: solute:proton antiporter activity4.96E-03
34GO:0010181: FMN binding4.96E-03
35GO:0005509: calcium ion binding5.85E-03
36GO:0015385: sodium:proton antiporter activity5.97E-03
37GO:0016301: kinase activity1.05E-02
38GO:0008422: beta-glucosidase activity1.06E-02
39GO:0004672: protein kinase activity1.06E-02
40GO:0031625: ubiquitin protein ligase binding1.58E-02
41GO:0016874: ligase activity1.81E-02
42GO:0003779: actin binding1.85E-02
43GO:0016746: transferase activity, transferring acyl groups1.93E-02
44GO:0004386: helicase activity2.01E-02
45GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.26E-02
46GO:0019825: oxygen binding2.28E-02
47GO:0015144: carbohydrate transmembrane transporter activity2.52E-02
48GO:0005351: sugar:proton symporter activity2.75E-02
49GO:0008017: microtubule binding2.88E-02
50GO:0005506: iron ion binding3.18E-02
51GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.31E-02
52GO:0042802: identical protein binding3.31E-02
53GO:0008233: peptidase activity4.39E-02
54GO:0004497: monooxygenase activity4.44E-02
55GO:0061630: ubiquitin protein ligase activity4.60E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.26E-05
2GO:0045252: oxoglutarate dehydrogenase complex5.18E-05
3GO:0005950: anthranilate synthase complex1.27E-04
4GO:0070062: extracellular exosome3.17E-04
5GO:0000145: exocyst3.58E-04
6GO:0000228: nuclear chromosome5.39E-04
7GO:0030131: clathrin adaptor complex1.06E-03
8GO:0016021: integral component of membrane1.13E-03
9GO:0030125: clathrin vesicle coat1.67E-03
10GO:0016459: myosin complex1.67E-03
11GO:0048471: perinuclear region of cytoplasm1.84E-03
12GO:0005905: clathrin-coated pit3.37E-03
13GO:0019005: SCF ubiquitin ligase complex8.46E-03
14GO:0090406: pollen tube1.19E-02
15GO:0016020: membrane1.64E-02
16GO:0005777: peroxisome1.83E-02
17GO:0012505: endomembrane system1.85E-02
18GO:0009524: phragmoplast2.31E-02
19GO:0005874: microtubule4.33E-02
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Gene type



Gene DE type