Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:0046467: membrane lipid biosynthetic process9.64E-06
3GO:0010450: inflorescence meristem growth9.64E-06
4GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.37E-05
5GO:0045165: cell fate commitment4.69E-05
6GO:0016120: carotene biosynthetic process1.30E-04
7GO:1902183: regulation of shoot apical meristem development1.30E-04
8GO:0010158: abaxial cell fate specification1.30E-04
9GO:0010019: chloroplast-nucleus signaling pathway1.98E-04
10GO:0010444: guard mother cell differentiation2.34E-04
11GO:0010078: maintenance of root meristem identity2.72E-04
12GO:0043562: cellular response to nitrogen levels3.11E-04
13GO:0010093: specification of floral organ identity3.11E-04
14GO:2000024: regulation of leaf development3.51E-04
15GO:0043085: positive regulation of catalytic activity4.78E-04
16GO:0009684: indoleacetic acid biosynthetic process4.78E-04
17GO:0010588: cotyledon vascular tissue pattern formation5.68E-04
18GO:0010102: lateral root morphogenesis5.68E-04
19GO:0009933: meristem structural organization6.14E-04
20GO:0048467: gynoecium development6.14E-04
21GO:0010030: positive regulation of seed germination6.61E-04
22GO:0009944: polarity specification of adaxial/abaxial axis7.58E-04
23GO:0019915: lipid storage8.59E-04
24GO:0045892: negative regulation of transcription, DNA-templated9.49E-04
25GO:0042127: regulation of cell proliferation1.01E-03
26GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.07E-03
27GO:0016117: carotenoid biosynthetic process1.07E-03
28GO:0080022: primary root development1.12E-03
29GO:0010087: phloem or xylem histogenesis1.12E-03
30GO:0042631: cellular response to water deprivation1.12E-03
31GO:0010154: fruit development1.18E-03
32GO:0009958: positive gravitropism1.18E-03
33GO:0009741: response to brassinosteroid1.18E-03
34GO:0048825: cotyledon development1.29E-03
35GO:0009851: auxin biosynthetic process1.29E-03
36GO:0009908: flower development1.80E-03
37GO:0009627: systemic acquired resistance1.85E-03
38GO:0015995: chlorophyll biosynthetic process1.92E-03
39GO:0016311: dephosphorylation1.98E-03
40GO:0048527: lateral root development2.26E-03
41GO:0034599: cellular response to oxidative stress2.48E-03
42GO:0009640: photomorphogenesis2.85E-03
43GO:0009585: red, far-red light phototransduction3.49E-03
44GO:0006857: oligopeptide transport3.65E-03
45GO:0009909: regulation of flower development3.74E-03
46GO:0048316: seed development3.99E-03
47GO:0048367: shoot system development3.99E-03
48GO:0009740: gibberellic acid mediated signaling pathway4.26E-03
49GO:0051726: regulation of cell cycle4.61E-03
50GO:0009742: brassinosteroid mediated signaling pathway4.61E-03
51GO:0040008: regulation of growth6.25E-03
52GO:0009826: unidimensional cell growth8.51E-03
53GO:0009658: chloroplast organization8.74E-03
54GO:0007049: cell cycle9.44E-03
55GO:0009723: response to ethylene9.69E-03
56GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.04E-02
57GO:0016042: lipid catabolic process1.31E-02
58GO:0006629: lipid metabolic process1.34E-02
59GO:0009734: auxin-activated signaling pathway1.71E-02
60GO:0051301: cell division2.14E-02
61GO:0042742: defense response to bacterium3.33E-02
62GO:0009733: response to auxin3.61E-02
63GO:0015031: protein transport3.95E-02
64GO:0006810: transport4.38E-02
RankGO TermAdjusted P value
1GO:0045436: lycopene beta cyclase activity0.00E+00
2GO:0046906: tetrapyrrole binding9.64E-06
3GO:0080097: L-tryptophan:pyruvate aminotransferase activity2.58E-05
4GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity2.58E-05
5GO:0016846: carbon-sulfur lyase activity1.30E-04
6GO:0035673: oligopeptide transmembrane transporter activity1.63E-04
7GO:0019899: enzyme binding2.34E-04
8GO:0015198: oligopeptide transporter activity5.23E-04
9GO:0004693: cyclin-dependent protein serine/threonine kinase activity2.19E-03
10GO:0003993: acid phosphatase activity2.48E-03
11GO:0016298: lipase activity3.57E-03
12GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.27E-03
13GO:0005515: protein binding5.57E-03
14GO:0016788: hydrolase activity, acting on ester bonds8.86E-03
15GO:0052689: carboxylic ester hydrolase activity1.09E-02
16GO:0004722: protein serine/threonine phosphatase activity1.23E-02
17GO:0003700: transcription factor activity, sequence-specific DNA binding2.01E-02
18GO:0005215: transporter activity3.58E-02
19GO:0016491: oxidoreductase activity4.05E-02
20GO:0046983: protein dimerization activity4.09E-02
21GO:0046872: metal ion binding4.16E-02
RankGO TermAdjusted P value
1GO:0010287: plastoglobule4.98E-03
2GO:0031969: chloroplast membrane1.02E-02
3GO:0005887: integral component of plasma membrane1.66E-02
4GO:0009941: chloroplast envelope1.87E-02
5GO:0009534: chloroplast thylakoid2.30E-02
6GO:0016021: integral component of membrane3.74E-02
7GO:0005789: endoplasmic reticulum membrane4.50E-02
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Gene type



Gene DE type