GO Enrichment Analysis of Co-expressed Genes with
AT4G39460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 5 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0042407: cristae formation | 0.00E+00 |
| 7 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 8 | GO:0006223: uracil salvage | 0.00E+00 |
| 9 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 10 | GO:0099131: ATP hydrolysis coupled ion transmembrane transport | 0.00E+00 |
| 11 | GO:0042493: response to drug | 0.00E+00 |
| 12 | GO:0042371: vitamin K biosynthetic process | 0.00E+00 |
| 13 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 14 | GO:0006412: translation | 9.01E-17 |
| 15 | GO:0042254: ribosome biogenesis | 6.65E-11 |
| 16 | GO:0032544: plastid translation | 9.70E-11 |
| 17 | GO:0006633: fatty acid biosynthetic process | 2.22E-06 |
| 18 | GO:0010207: photosystem II assembly | 1.65E-05 |
| 19 | GO:0032543: mitochondrial translation | 3.35E-05 |
| 20 | GO:0010236: plastoquinone biosynthetic process | 3.35E-05 |
| 21 | GO:0042372: phylloquinone biosynthetic process | 6.99E-05 |
| 22 | GO:0060627: regulation of vesicle-mediated transport | 1.62E-04 |
| 23 | GO:0043489: RNA stabilization | 1.62E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.62E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 1.62E-04 |
| 26 | GO:1902458: positive regulation of stomatal opening | 1.62E-04 |
| 27 | GO:0010027: thylakoid membrane organization | 1.99E-04 |
| 28 | GO:0043085: positive regulation of catalytic activity | 3.02E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.69E-04 |
| 30 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.69E-04 |
| 31 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.69E-04 |
| 32 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.69E-04 |
| 33 | GO:0010581: regulation of starch biosynthetic process | 6.04E-04 |
| 34 | GO:0051211: anisotropic cell growth | 6.04E-04 |
| 35 | GO:2001295: malonyl-CoA biosynthetic process | 6.04E-04 |
| 36 | GO:0009658: chloroplast organization | 7.49E-04 |
| 37 | GO:0006241: CTP biosynthetic process | 8.63E-04 |
| 38 | GO:0006165: nucleoside diphosphate phosphorylation | 8.63E-04 |
| 39 | GO:0006228: UTP biosynthetic process | 8.63E-04 |
| 40 | GO:0009650: UV protection | 8.63E-04 |
| 41 | GO:0006424: glutamyl-tRNA aminoacylation | 8.63E-04 |
| 42 | GO:0055070: copper ion homeostasis | 8.63E-04 |
| 43 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.63E-04 |
| 44 | GO:0009735: response to cytokinin | 8.64E-04 |
| 45 | GO:0009411: response to UV | 8.83E-04 |
| 46 | GO:0042335: cuticle development | 1.11E-03 |
| 47 | GO:0000413: protein peptidyl-prolyl isomerization | 1.11E-03 |
| 48 | GO:0006183: GTP biosynthetic process | 1.14E-03 |
| 49 | GO:0044206: UMP salvage | 1.14E-03 |
| 50 | GO:0006808: regulation of nitrogen utilization | 1.14E-03 |
| 51 | GO:0015979: photosynthesis | 1.26E-03 |
| 52 | GO:0045454: cell redox homeostasis | 1.35E-03 |
| 53 | GO:0048359: mucilage metabolic process involved in seed coat development | 1.45E-03 |
| 54 | GO:0000304: response to singlet oxygen | 1.45E-03 |
| 55 | GO:0043097: pyrimidine nucleoside salvage | 1.45E-03 |
| 56 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.45E-03 |
| 57 | GO:0031365: N-terminal protein amino acid modification | 1.45E-03 |
| 58 | GO:0035434: copper ion transmembrane transport | 1.45E-03 |
| 59 | GO:0032502: developmental process | 1.56E-03 |
| 60 | GO:0009409: response to cold | 1.63E-03 |
| 61 | GO:0006555: methionine metabolic process | 1.78E-03 |
| 62 | GO:0006206: pyrimidine nucleobase metabolic process | 1.78E-03 |
| 63 | GO:0042549: photosystem II stabilization | 1.78E-03 |
| 64 | GO:0009955: adaxial/abaxial pattern specification | 2.14E-03 |
| 65 | GO:1901259: chloroplast rRNA processing | 2.14E-03 |
| 66 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.14E-03 |
| 67 | GO:0017148: negative regulation of translation | 2.14E-03 |
| 68 | GO:0010189: vitamin E biosynthetic process | 2.14E-03 |
| 69 | GO:0009854: oxidative photosynthetic carbon pathway | 2.14E-03 |
| 70 | GO:0009772: photosynthetic electron transport in photosystem II | 2.52E-03 |
| 71 | GO:0030497: fatty acid elongation | 2.52E-03 |
| 72 | GO:0006400: tRNA modification | 2.52E-03 |
| 73 | GO:0009610: response to symbiotic fungus | 2.52E-03 |
| 74 | GO:0048564: photosystem I assembly | 2.91E-03 |
| 75 | GO:0042255: ribosome assembly | 2.91E-03 |
| 76 | GO:0006353: DNA-templated transcription, termination | 2.91E-03 |
| 77 | GO:2000070: regulation of response to water deprivation | 2.91E-03 |
| 78 | GO:0045010: actin nucleation | 2.91E-03 |
| 79 | GO:0009932: cell tip growth | 3.33E-03 |
| 80 | GO:0015996: chlorophyll catabolic process | 3.33E-03 |
| 81 | GO:0007186: G-protein coupled receptor signaling pathway | 3.33E-03 |
| 82 | GO:0009657: plastid organization | 3.33E-03 |
| 83 | GO:0019430: removal of superoxide radicals | 3.33E-03 |
| 84 | GO:0006526: arginine biosynthetic process | 3.33E-03 |
| 85 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.77E-03 |
| 86 | GO:0015780: nucleotide-sugar transport | 3.77E-03 |
| 87 | GO:0030001: metal ion transport | 3.93E-03 |
| 88 | GO:0043067: regulation of programmed cell death | 4.22E-03 |
| 89 | GO:0035999: tetrahydrofolate interconversion | 4.22E-03 |
| 90 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.22E-03 |
| 91 | GO:0043069: negative regulation of programmed cell death | 4.69E-03 |
| 92 | GO:0045036: protein targeting to chloroplast | 4.69E-03 |
| 93 | GO:0006949: syncytium formation | 4.69E-03 |
| 94 | GO:0000038: very long-chain fatty acid metabolic process | 5.19E-03 |
| 95 | GO:0009073: aromatic amino acid family biosynthetic process | 5.19E-03 |
| 96 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.19E-03 |
| 97 | GO:0045037: protein import into chloroplast stroma | 5.69E-03 |
| 98 | GO:0009767: photosynthetic electron transport chain | 6.22E-03 |
| 99 | GO:0006006: glucose metabolic process | 6.22E-03 |
| 100 | GO:0030036: actin cytoskeleton organization | 6.22E-03 |
| 101 | GO:0010020: chloroplast fission | 6.76E-03 |
| 102 | GO:0010025: wax biosynthetic process | 7.90E-03 |
| 103 | GO:0006833: water transport | 7.90E-03 |
| 104 | GO:0009116: nucleoside metabolic process | 8.48E-03 |
| 105 | GO:0000027: ribosomal large subunit assembly | 8.48E-03 |
| 106 | GO:0005992: trehalose biosynthetic process | 8.48E-03 |
| 107 | GO:0055114: oxidation-reduction process | 9.03E-03 |
| 108 | GO:0006418: tRNA aminoacylation for protein translation | 9.09E-03 |
| 109 | GO:0031408: oxylipin biosynthetic process | 9.72E-03 |
| 110 | GO:0006730: one-carbon metabolic process | 1.04E-02 |
| 111 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.10E-02 |
| 112 | GO:0009790: embryo development | 1.25E-02 |
| 113 | GO:0042742: defense response to bacterium | 1.29E-02 |
| 114 | GO:0008033: tRNA processing | 1.31E-02 |
| 115 | GO:0034220: ion transmembrane transport | 1.31E-02 |
| 116 | GO:0006520: cellular amino acid metabolic process | 1.38E-02 |
| 117 | GO:0006662: glycerol ether metabolic process | 1.38E-02 |
| 118 | GO:0010197: polar nucleus fusion | 1.38E-02 |
| 119 | GO:0010182: sugar mediated signaling pathway | 1.38E-02 |
| 120 | GO:0007018: microtubule-based movement | 1.45E-02 |
| 121 | GO:0009793: embryo development ending in seed dormancy | 1.49E-02 |
| 122 | GO:0010090: trichome morphogenesis | 1.75E-02 |
| 123 | GO:0009828: plant-type cell wall loosening | 1.83E-02 |
| 124 | GO:0015995: chlorophyll biosynthetic process | 2.33E-02 |
| 125 | GO:0010411: xyloglucan metabolic process | 2.33E-02 |
| 126 | GO:0016311: dephosphorylation | 2.42E-02 |
| 127 | GO:0009817: defense response to fungus, incompatible interaction | 2.51E-02 |
| 128 | GO:0048481: plant ovule development | 2.51E-02 |
| 129 | GO:0030244: cellulose biosynthetic process | 2.51E-02 |
| 130 | GO:0018298: protein-chromophore linkage | 2.51E-02 |
| 131 | GO:0006457: protein folding | 2.60E-02 |
| 132 | GO:0009631: cold acclimation | 2.78E-02 |
| 133 | GO:0009853: photorespiration | 2.97E-02 |
| 134 | GO:0045087: innate immune response | 2.97E-02 |
| 135 | GO:0034599: cellular response to oxidative stress | 3.06E-02 |
| 136 | GO:0006631: fatty acid metabolic process | 3.35E-02 |
| 137 | GO:0042542: response to hydrogen peroxide | 3.45E-02 |
| 138 | GO:0051707: response to other organism | 3.55E-02 |
| 139 | GO:0042546: cell wall biogenesis | 3.66E-02 |
| 140 | GO:0006869: lipid transport | 3.73E-02 |
| 141 | GO:0008643: carbohydrate transport | 3.76E-02 |
| 142 | GO:0042538: hyperosmotic salinity response | 4.18E-02 |
| 143 | GO:0009664: plant-type cell wall organization | 4.18E-02 |
| 144 | GO:0009585: red, far-red light phototransduction | 4.39E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 2 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 6 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 7 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 8 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 9 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 10 | GO:0019843: rRNA binding | 3.30E-21 |
| 11 | GO:0003735: structural constituent of ribosome | 8.62E-19 |
| 12 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.30E-06 |
| 13 | GO:0043023: ribosomal large subunit binding | 1.11E-05 |
| 14 | GO:0051920: peroxiredoxin activity | 6.99E-05 |
| 15 | GO:0016209: antioxidant activity | 1.20E-04 |
| 16 | GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity | 1.62E-04 |
| 17 | GO:0004560: alpha-L-fucosidase activity | 1.62E-04 |
| 18 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.62E-04 |
| 19 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.62E-04 |
| 20 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.62E-04 |
| 21 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 1.62E-04 |
| 22 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.62E-04 |
| 23 | GO:0008047: enzyme activator activity | 2.60E-04 |
| 24 | GO:0004817: cysteine-tRNA ligase activity | 3.69E-04 |
| 25 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.69E-04 |
| 26 | GO:0008266: poly(U) RNA binding | 4.47E-04 |
| 27 | GO:0003729: mRNA binding | 5.42E-04 |
| 28 | GO:0016531: copper chaperone activity | 6.04E-04 |
| 29 | GO:0019829: cation-transporting ATPase activity | 6.04E-04 |
| 30 | GO:0017150: tRNA dihydrouridine synthase activity | 6.04E-04 |
| 31 | GO:0002161: aminoacyl-tRNA editing activity | 6.04E-04 |
| 32 | GO:0004075: biotin carboxylase activity | 6.04E-04 |
| 33 | GO:0030267: glyoxylate reductase (NADP) activity | 6.04E-04 |
| 34 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.04E-04 |
| 35 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 6.04E-04 |
| 36 | GO:0005528: FK506 binding | 6.16E-04 |
| 37 | GO:0004550: nucleoside diphosphate kinase activity | 8.63E-04 |
| 38 | GO:0008097: 5S rRNA binding | 8.63E-04 |
| 39 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.14E-03 |
| 40 | GO:0016836: hydro-lyase activity | 1.14E-03 |
| 41 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.14E-03 |
| 42 | GO:0043495: protein anchor | 1.14E-03 |
| 43 | GO:0004659: prenyltransferase activity | 1.14E-03 |
| 44 | GO:0004845: uracil phosphoribosyltransferase activity | 1.14E-03 |
| 45 | GO:0004791: thioredoxin-disulfide reductase activity | 1.28E-03 |
| 46 | GO:0009922: fatty acid elongase activity | 1.45E-03 |
| 47 | GO:0003989: acetyl-CoA carboxylase activity | 1.45E-03 |
| 48 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.66E-03 |
| 49 | GO:0016208: AMP binding | 1.78E-03 |
| 50 | GO:0004849: uridine kinase activity | 2.14E-03 |
| 51 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.14E-03 |
| 52 | GO:0008235: metalloexopeptidase activity | 2.52E-03 |
| 53 | GO:0019899: enzyme binding | 2.52E-03 |
| 54 | GO:0005375: copper ion transmembrane transporter activity | 3.33E-03 |
| 55 | GO:0004805: trehalose-phosphatase activity | 4.69E-03 |
| 56 | GO:0004177: aminopeptidase activity | 5.19E-03 |
| 57 | GO:0000049: tRNA binding | 5.69E-03 |
| 58 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 6.22E-03 |
| 59 | GO:0005507: copper ion binding | 7.59E-03 |
| 60 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 7.90E-03 |
| 61 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 7.90E-03 |
| 62 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 7.90E-03 |
| 63 | GO:0022891: substrate-specific transmembrane transporter activity | 1.10E-02 |
| 64 | GO:0005509: calcium ion binding | 1.14E-02 |
| 65 | GO:0008514: organic anion transmembrane transporter activity | 1.17E-02 |
| 66 | GO:0003727: single-stranded RNA binding | 1.17E-02 |
| 67 | GO:0047134: protein-disulfide reductase activity | 1.24E-02 |
| 68 | GO:0004812: aminoacyl-tRNA ligase activity | 1.24E-02 |
| 69 | GO:0008080: N-acetyltransferase activity | 1.38E-02 |
| 70 | GO:0016853: isomerase activity | 1.45E-02 |
| 71 | GO:0050662: coenzyme binding | 1.45E-02 |
| 72 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.60E-02 |
| 73 | GO:0042802: identical protein binding | 1.88E-02 |
| 74 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.91E-02 |
| 75 | GO:0016491: oxidoreductase activity | 1.95E-02 |
| 76 | GO:0003723: RNA binding | 1.95E-02 |
| 77 | GO:0015250: water channel activity | 2.07E-02 |
| 78 | GO:0016168: chlorophyll binding | 2.16E-02 |
| 79 | GO:0004601: peroxidase activity | 2.29E-02 |
| 80 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.33E-02 |
| 81 | GO:0016788: hydrolase activity, acting on ester bonds | 2.34E-02 |
| 82 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.42E-02 |
| 83 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.51E-02 |
| 84 | GO:0003746: translation elongation factor activity | 2.97E-02 |
| 85 | GO:0003993: acid phosphatase activity | 3.06E-02 |
| 86 | GO:0052689: carboxylic ester hydrolase activity | 3.14E-02 |
| 87 | GO:0050661: NADP binding | 3.26E-02 |
| 88 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.26E-02 |
| 89 | GO:0005525: GTP binding | 3.50E-02 |
| 90 | GO:0042803: protein homodimerization activity | 3.56E-02 |
| 91 | GO:0051287: NAD binding | 4.07E-02 |
| 92 | GO:0003924: GTPase activity | 4.18E-02 |
| 93 | GO:0003690: double-stranded DNA binding | 4.50E-02 |
| 94 | GO:0003777: microtubule motor activity | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 2.68E-51 |
| 4 | GO:0009507: chloroplast | 1.36E-44 |
| 5 | GO:0009941: chloroplast envelope | 4.03E-35 |
| 6 | GO:0009579: thylakoid | 8.08E-23 |
| 7 | GO:0005840: ribosome | 1.42E-17 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.24E-12 |
| 9 | GO:0009535: chloroplast thylakoid membrane | 2.30E-12 |
| 10 | GO:0031977: thylakoid lumen | 1.31E-09 |
| 11 | GO:0009534: chloroplast thylakoid | 6.17E-07 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 7.24E-07 |
| 13 | GO:0019898: extrinsic component of membrane | 3.89E-06 |
| 14 | GO:0000311: plastid large ribosomal subunit | 1.07E-05 |
| 15 | GO:0000312: plastid small ribosomal subunit | 1.65E-05 |
| 16 | GO:0009536: plastid | 7.19E-05 |
| 17 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.62E-04 |
| 18 | GO:0009547: plastid ribosome | 1.62E-04 |
| 19 | GO:0010319: stromule | 1.69E-04 |
| 20 | GO:0016020: membrane | 2.60E-04 |
| 21 | GO:0030095: chloroplast photosystem II | 4.47E-04 |
| 22 | GO:0009528: plastid inner membrane | 6.04E-04 |
| 23 | GO:0042651: thylakoid membrane | 6.78E-04 |
| 24 | GO:0015935: small ribosomal subunit | 7.44E-04 |
| 25 | GO:0031969: chloroplast membrane | 1.03E-03 |
| 26 | GO:0009527: plastid outer membrane | 1.14E-03 |
| 27 | GO:0031209: SCAR complex | 1.78E-03 |
| 28 | GO:0009707: chloroplast outer membrane | 2.74E-03 |
| 29 | GO:0022627: cytosolic small ribosomal subunit | 3.46E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 3.77E-03 |
| 31 | GO:0022626: cytosolic ribosome | 4.15E-03 |
| 32 | GO:0043234: protein complex | 7.90E-03 |
| 33 | GO:0009706: chloroplast inner membrane | 8.52E-03 |
| 34 | GO:0031225: anchored component of membrane | 8.71E-03 |
| 35 | GO:0009532: plastid stroma | 9.72E-03 |
| 36 | GO:0005871: kinesin complex | 1.24E-02 |
| 37 | GO:0009523: photosystem II | 1.52E-02 |
| 38 | GO:0009505: plant-type cell wall | 1.81E-02 |
| 39 | GO:0005778: peroxisomal membrane | 1.91E-02 |
| 40 | GO:0046658: anchored component of plasma membrane | 1.96E-02 |
| 41 | GO:0030529: intracellular ribonucleoprotein complex | 2.07E-02 |
| 42 | GO:0015934: large ribosomal subunit | 2.78E-02 |
| 43 | GO:0022625: cytosolic large ribosomal subunit | 2.99E-02 |
| 44 | GO:0048046: apoplast | 3.20E-02 |