co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0042371: vitamin K biosynthetic process	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0045176: apical protein localization	0.00E+00
7	GO:0006223: uracil salvage	0.00E+00
8	GO:0016553: base conversion or substitution editing	0.00E+00
9	GO:0006412: translation	2.30E-12
10	GO:0009735: response to cytokinin	4.88E-08
11	GO:0042254: ribosome biogenesis	1.13E-07
12	GO:0032544: plastid translation	4.07E-06
13	GO:0042335: cuticle development	4.32E-06
14	GO:0010037: response to carbon dioxide	2.88E-05
15	GO:0015976: carbon utilization	2.88E-05
16	GO:0006183: GTP biosynthetic process	2.88E-05
17	GO:2000122: negative regulation of stomatal complex development	2.88E-05
18	GO:0015979: photosynthesis	5.59E-05
19	GO:0000413: protein peptidyl-prolyl isomerization	1.14E-04
20	GO:0043489: RNA stabilization	1.98E-04
21	GO:1904966: positive regulation of vitamin E biosynthetic process	1.98E-04
22	GO:0000481: maturation of 5S rRNA	1.98E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	1.98E-04
24	GO:0034337: RNA folding	1.98E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	1.98E-04
26	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.98E-04
27	GO:0060627: regulation of vesicle-mediated transport	1.98E-04
28	GO:0009773: photosynthetic electron transport in photosystem I	3.97E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.43E-04
30	GO:0043255: regulation of carbohydrate biosynthetic process	4.43E-04
31	GO:0006518: peptide metabolic process	7.22E-04
32	GO:2001295: malonyl-CoA biosynthetic process	7.22E-04
33	GO:0009409: response to cold	8.15E-04
34	GO:1901332: negative regulation of lateral root development	1.03E-03
35	GO:0051639: actin filament network formation	1.03E-03
36	GO:0006241: CTP biosynthetic process	1.03E-03
37	GO:0019048: modulation by virus of host morphology or physiology	1.03E-03
38	GO:0051016: barbed-end actin filament capping	1.03E-03
39	GO:0009650: UV protection	1.03E-03
40	GO:0006165: nucleoside diphosphate phosphorylation	1.03E-03
41	GO:0006228: UTP biosynthetic process	1.03E-03
42	GO:0031048: chromatin silencing by small RNA	1.03E-03
43	GO:0009411: response to UV	1.14E-03
44	GO:0044206: UMP salvage	1.37E-03
45	GO:0051764: actin crosslink formation	1.37E-03
46	GO:0045727: positive regulation of translation	1.37E-03
47	GO:0051567: histone H3-K9 methylation	1.37E-03
48	GO:0009416: response to light stimulus	1.63E-03
49	GO:0043097: pyrimidine nucleoside salvage	1.74E-03
50	GO:0010236: plastoquinone biosynthetic process	1.74E-03
51	GO:0032502: developmental process	2.04E-03
52	GO:0010337: regulation of salicylic acid metabolic process	2.14E-03
53	GO:0016458: gene silencing	2.14E-03
54	GO:0006014: D-ribose metabolic process	2.14E-03
55	GO:0048827: phyllome development	2.14E-03
56	GO:0042549: photosystem II stabilization	2.14E-03
57	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.14E-03
58	GO:0009913: epidermal cell differentiation	2.14E-03
59	GO:0006206: pyrimidine nucleobase metabolic process	2.14E-03
60	GO:1901259: chloroplast rRNA processing	2.57E-03
61	GO:0006694: steroid biosynthetic process	2.57E-03
62	GO:0009854: oxidative photosynthetic carbon pathway	2.57E-03
63	GO:0010019: chloroplast-nucleus signaling pathway	2.57E-03
64	GO:0010555: response to mannitol	2.57E-03
65	GO:0009955: adaxial/abaxial pattern specification	2.57E-03
66	GO:0042372: phylloquinone biosynthetic process	2.57E-03
67	GO:0010027: thylakoid membrane organization	2.76E-03
68	GO:0009772: photosynthetic electron transport in photosystem II	3.03E-03
69	GO:0051693: actin filament capping	3.03E-03
70	GO:0006633: fatty acid biosynthetic process	3.05E-03
71	GO:0015995: chlorophyll biosynthetic process	3.24E-03
72	GO:0006353: DNA-templated transcription, termination	3.51E-03
73	GO:0032508: DNA duplex unwinding	3.51E-03
74	GO:0008610: lipid biosynthetic process	3.51E-03
75	GO:0009642: response to light intensity	3.51E-03
76	GO:0030091: protein repair	3.51E-03
77	GO:0042255: ribosome assembly	3.51E-03
78	GO:0018298: protein-chromophore linkage	3.59E-03
79	GO:0009808: lignin metabolic process	4.02E-03
80	GO:0010119: regulation of stomatal movement	4.15E-03
81	GO:0009631: cold acclimation	4.15E-03
82	GO:0000902: cell morphogenesis	4.54E-03
83	GO:0034599: cellular response to oxidative stress	4.74E-03
84	GO:0006779: porphyrin-containing compound biosynthetic process	5.10E-03
85	GO:0042742: defense response to bacterium	5.63E-03
86	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.67E-03
87	GO:0006032: chitin catabolic process	5.67E-03
88	GO:0030422: production of siRNA involved in RNA interference	5.67E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	5.67E-03
90	GO:0043085: positive regulation of catalytic activity	6.27E-03
91	GO:0000038: very long-chain fatty acid metabolic process	6.27E-03
92	GO:0019684: photosynthesis, light reaction	6.27E-03
93	GO:0009089: lysine biosynthetic process via diaminopimelate	6.27E-03
94	GO:0007165: signal transduction	6.60E-03
95	GO:0006855: drug transmembrane transport	6.82E-03
96	GO:0006006: glucose metabolic process	7.52E-03
97	GO:0010229: inflorescence development	7.52E-03
98	GO:0030036: actin cytoskeleton organization	7.52E-03
99	GO:0010102: lateral root morphogenesis	7.52E-03
100	GO:0009809: lignin biosynthetic process	7.88E-03
101	GO:0019253: reductive pentose-phosphate cycle	8.19E-03
102	GO:0007015: actin filament organization	8.19E-03
103	GO:0010540: basipetal auxin transport	8.19E-03
104	GO:0010143: cutin biosynthetic process	8.19E-03
105	GO:0010207: photosystem II assembly	8.19E-03
106	GO:0010053: root epidermal cell differentiation	8.87E-03
107	GO:0009825: multidimensional cell growth	8.87E-03
108	GO:0010167: response to nitrate	8.87E-03
109	GO:0006833: water transport	9.57E-03
110	GO:0045454: cell redox homeostasis	9.88E-03
111	GO:0006457: protein folding	9.99E-03
112	GO:0051017: actin filament bundle assembly	1.03E-02
113	GO:0019344: cysteine biosynthetic process	1.03E-02
114	GO:0009116: nucleoside metabolic process	1.03E-02
115	GO:0000027: ribosomal large subunit assembly	1.03E-02
116	GO:0009768: photosynthesis, light harvesting in photosystem I	1.10E-02
117	GO:0007017: microtubule-based process	1.10E-02
118	GO:0006869: lipid transport	1.11E-02
119	GO:0016998: cell wall macromolecule catabolic process	1.18E-02
120	GO:0061077: chaperone-mediated protein folding	1.18E-02
121	GO:0006306: DNA methylation	1.18E-02
122	GO:0016042: lipid catabolic process	1.24E-02
123	GO:0009306: protein secretion	1.42E-02
124	GO:0019722: calcium-mediated signaling	1.42E-02
125	GO:0008033: tRNA processing	1.59E-02
126	GO:0034220: ion transmembrane transport	1.59E-02
127	GO:0006662: glycerol ether metabolic process	1.67E-02
128	GO:0006342: chromatin silencing	1.67E-02
129	GO:0007018: microtubule-based movement	1.76E-02
130	GO:0048825: cotyledon development	1.85E-02
131	GO:0019252: starch biosynthetic process	1.85E-02
132	GO:0000302: response to reactive oxygen species	1.94E-02
133	GO:0016132: brassinosteroid biosynthetic process	1.94E-02
134	GO:0071554: cell wall organization or biogenesis	1.94E-02
135	GO:0002229: defense response to oomycetes	1.94E-02
136	GO:0071555: cell wall organization	1.96E-02
137	GO:0071281: cellular response to iron ion	2.13E-02
138	GO:0007267: cell-cell signaling	2.33E-02
139	GO:0051607: defense response to virus	2.42E-02
140	GO:0009911: positive regulation of flower development	2.53E-02
141	GO:0009816: defense response to bacterium, incompatible interaction	2.63E-02
142	GO:0009627: systemic acquired resistance	2.73E-02
143	GO:0010411: xyloglucan metabolic process	2.84E-02
144	GO:0009658: chloroplast organization	3.02E-02
145	GO:0030244: cellulose biosynthetic process	3.05E-02
146	GO:0009817: defense response to fungus, incompatible interaction	3.05E-02
147	GO:0010311: lateral root formation	3.16E-02
148	GO:0010218: response to far red light	3.27E-02
149	GO:0009834: plant-type secondary cell wall biogenesis	3.27E-02
150	GO:0009407: toxin catabolic process	3.27E-02
151	GO:0055085: transmembrane transport	3.58E-02
152	GO:0016051: carbohydrate biosynthetic process	3.61E-02
153	GO:0009637: response to blue light	3.61E-02
154	GO:0009853: photorespiration	3.61E-02
155	GO:0045087: innate immune response	3.61E-02
156	GO:0030001: metal ion transport	3.96E-02
157	GO:0055114: oxidation-reduction process	4.05E-02
158	GO:0042542: response to hydrogen peroxide	4.20E-02
159	GO:0010114: response to red light	4.32E-02
160	GO:0042546: cell wall biogenesis	4.45E-02
161	GO:0009636: response to toxic substance	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0008887: glycerate kinase activity	0.00E+00
10	GO:0019843: rRNA binding	4.60E-22
11	GO:0003735: structural constituent of ribosome	5.38E-14
12	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.63E-06
13	GO:0008266: poly(U) RNA binding	2.58E-05
14	GO:0051920: peroxiredoxin activity	9.52E-05
15	GO:0016209: antioxidant activity	1.62E-04
16	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.98E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.98E-04
18	GO:0052689: carboxylic ester hydrolase activity	3.55E-04
19	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.43E-04
20	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.43E-04
21	GO:0003938: IMP dehydrogenase activity	4.43E-04
22	GO:0004089: carbonate dehydratase activity	5.18E-04
23	GO:0004075: biotin carboxylase activity	7.22E-04
24	GO:0030267: glyoxylate reductase (NADP) activity	7.22E-04
25	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.22E-04
26	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	7.22E-04
27	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	7.22E-04
28	GO:0050734: hydroxycinnamoyltransferase activity	7.22E-04
29	GO:0004148: dihydrolipoyl dehydrogenase activity	7.22E-04
30	GO:0035197: siRNA binding	1.03E-03
31	GO:0004550: nucleoside diphosphate kinase activity	1.03E-03
32	GO:0008097: 5S rRNA binding	1.03E-03
33	GO:0016788: hydrolase activity, acting on ester bonds	1.16E-03
34	GO:0043495: protein anchor	1.37E-03
35	GO:0004659: prenyltransferase activity	1.37E-03
36	GO:0004845: uracil phosphoribosyltransferase activity	1.37E-03
37	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.37E-03
38	GO:0052793: pectin acetylesterase activity	1.37E-03
39	GO:0004040: amidase activity	1.74E-03
40	GO:0003989: acetyl-CoA carboxylase activity	1.74E-03
41	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.74E-03
42	GO:0016688: L-ascorbate peroxidase activity	2.14E-03
43	GO:0004130: cytochrome-c peroxidase activity	2.14E-03
44	GO:0051015: actin filament binding	2.18E-03
45	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.57E-03
46	GO:0004747: ribokinase activity	2.57E-03
47	GO:0004849: uridine kinase activity	2.57E-03
48	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.57E-03
49	GO:0016168: chlorophyll binding	2.91E-03
50	GO:0019899: enzyme binding	3.03E-03
51	GO:0008865: fructokinase activity	3.51E-03
52	GO:0052747: sinapyl alcohol dehydrogenase activity	3.51E-03
53	GO:0047617: acyl-CoA hydrolase activity	5.10E-03
54	GO:0004568: chitinase activity	5.67E-03
55	GO:0008047: enzyme activator activity	5.67E-03
56	GO:0051537: 2 iron, 2 sulfur cluster binding	6.33E-03
57	GO:0045551: cinnamyl-alcohol dehydrogenase activity	6.89E-03
58	GO:0004521: endoribonuclease activity	6.89E-03
59	GO:0003777: microtubule motor activity	8.73E-03
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.57E-03
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.57E-03
62	GO:0031409: pigment binding	9.57E-03
63	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.57E-03
64	GO:0005528: FK506 binding	1.03E-02
65	GO:0004871: signal transducer activity	1.05E-02
66	GO:0004707: MAP kinase activity	1.18E-02
67	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-02
68	GO:0003727: single-stranded RNA binding	1.42E-02
69	GO:0047134: protein-disulfide reductase activity	1.50E-02
70	GO:0008080: N-acetyltransferase activity	1.67E-02
71	GO:0050662: coenzyme binding	1.76E-02
72	GO:0004791: thioredoxin-disulfide reductase activity	1.76E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.94E-02
74	GO:0008289: lipid binding	1.96E-02
75	GO:0008017: microtubule binding	2.04E-02
76	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.13E-02
77	GO:0005200: structural constituent of cytoskeleton	2.33E-02
78	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.33E-02
79	GO:0016413: O-acetyltransferase activity	2.42E-02
80	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.48E-02
81	GO:0015250: water channel activity	2.53E-02
82	GO:0030247: polysaccharide binding	2.84E-02
83	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.84E-02
84	GO:0004601: peroxidase activity	3.02E-02
85	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.05E-02
86	GO:0015238: drug transmembrane transporter activity	3.16E-02
87	GO:0004222: metalloendopeptidase activity	3.27E-02
88	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.38E-02
89	GO:0003729: mRNA binding	3.51E-02
90	GO:0050661: NADP binding	3.96E-02
91	GO:0004364: glutathione transferase activity	4.20E-02
92	GO:0005525: GTP binding	4.91E-02
93	GO:0051287: NAD binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	1.18E-36
2	GO:0009507: chloroplast	4.96E-32
3	GO:0009941: chloroplast envelope	4.35E-30
4	GO:0009579: thylakoid	1.03E-18
5	GO:0009535: chloroplast thylakoid membrane	1.15E-14
6	GO:0005840: ribosome	5.62E-14
7	GO:0031977: thylakoid lumen	1.76E-12
8	GO:0009543: chloroplast thylakoid lumen	1.66E-10
9	GO:0009534: chloroplast thylakoid	1.06E-09
10	GO:0048046: apoplast	6.88E-09
11	GO:0016020: membrane	8.74E-06
12	GO:0000311: plastid large ribosomal subunit	1.69E-05
13	GO:0009547: plastid ribosome	1.98E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.98E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-04
16	GO:0010287: plastoglobule	3.25E-04
17	GO:0005618: cell wall	3.39E-04
18	GO:0005884: actin filament	3.97E-04
19	GO:0008290: F-actin capping protein complex	4.43E-04
20	GO:0009654: photosystem II oxygen evolving complex	8.81E-04
21	GO:0042651: thylakoid membrane	8.81E-04
22	GO:0005719: nuclear euchromatin	1.03E-03
23	GO:0032432: actin filament bundle	1.03E-03
24	GO:0019898: extrinsic component of membrane	1.79E-03
25	GO:0009505: plant-type cell wall	2.43E-03
26	GO:0010319: stromule	2.46E-03
27	GO:0030529: intracellular ribonucleoprotein complex	2.76E-03
28	GO:0009533: chloroplast stromal thylakoid	3.03E-03
29	GO:0031225: anchored component of membrane	3.57E-03
30	GO:0045298: tubulin complex	4.54E-03
31	GO:0005763: mitochondrial small ribosomal subunit	4.54E-03
32	GO:0046658: anchored component of plasma membrane	4.90E-03
33	GO:0015030: Cajal body	5.10E-03
34	GO:0022626: cytosolic ribosome	6.32E-03
35	GO:0032040: small-subunit processome	6.89E-03
36	GO:0005874: microtubule	7.52E-03
37	GO:0030095: chloroplast photosystem II	8.19E-03
38	GO:0022625: cytosolic large ribosomal subunit	8.38E-03
39	GO:0030076: light-harvesting complex	8.87E-03
40	GO:0005875: microtubule associated complex	9.57E-03
41	GO:0015935: small ribosomal subunit	1.18E-02
42	GO:0005871: kinesin complex	1.50E-02
43	GO:0005770: late endosome	1.67E-02
44	GO:0009522: photosystem I	1.76E-02
45	GO:0009523: photosystem II	1.85E-02
46	GO:0005886: plasma membrane	2.07E-02
47	GO:0009536: plastid	2.65E-02
48	GO:0015934: large ribosomal subunit	3.38E-02
49	GO:0005819: spindle	3.84E-02