co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
2	GO:0042407: cristae formation	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0006223: uracil salvage	0.00E+00
5	GO:0010430: fatty acid omega-oxidation	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0010394: homogalacturonan metabolic process	0.00E+00
8	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:0006633: fatty acid biosynthetic process	1.67E-06
11	GO:0032544: plastid translation	2.14E-06
12	GO:0006085: acetyl-CoA biosynthetic process	1.84E-05
13	GO:0016117: carotenoid biosynthetic process	5.87E-05
14	GO:0045489: pectin biosynthetic process	7.43E-05
15	GO:0010442: guard cell morphogenesis	1.52E-04
16	GO:0042371: vitamin K biosynthetic process	1.52E-04
17	GO:0045488: pectin metabolic process	1.52E-04
18	GO:0052541: plant-type cell wall cellulose metabolic process	3.47E-04
19	GO:0010086: embryonic root morphogenesis	3.47E-04
20	GO:0006423: cysteinyl-tRNA aminoacylation	3.47E-04
21	GO:0043039: tRNA aminoacylation	3.47E-04
22	GO:0008152: metabolic process	3.66E-04
23	GO:0006631: fatty acid metabolic process	4.33E-04
24	GO:0009116: nucleoside metabolic process	5.64E-04
25	GO:0006696: ergosterol biosynthetic process	5.68E-04
26	GO:0045793: positive regulation of cell size	5.68E-04
27	GO:0006065: UDP-glucuronate biosynthetic process	5.68E-04
28	GO:0006418: tRNA aminoacylation for protein translation	6.20E-04
29	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.13E-04
30	GO:0071329: cellular response to sucrose stimulus	8.13E-04
31	GO:0010088: phloem development	8.13E-04
32	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	8.13E-04
33	GO:0007231: osmosensory signaling pathway	8.13E-04
34	GO:0000271: polysaccharide biosynthetic process	1.02E-03
35	GO:0009765: photosynthesis, light harvesting	1.08E-03
36	GO:0044206: UMP salvage	1.08E-03
37	GO:0033500: carbohydrate homeostasis	1.08E-03
38	GO:0006546: glycine catabolic process	1.08E-03
39	GO:0055114: oxidation-reduction process	1.31E-03
40	GO:0048359: mucilage metabolic process involved in seed coat development	1.36E-03
41	GO:0016120: carotene biosynthetic process	1.36E-03
42	GO:0043097: pyrimidine nucleoside salvage	1.36E-03
43	GO:0016123: xanthophyll biosynthetic process	1.36E-03
44	GO:0006206: pyrimidine nucleobase metabolic process	1.67E-03
45	GO:0048831: regulation of shoot system development	1.67E-03
46	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.67E-03
47	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.67E-03
48	GO:0006555: methionine metabolic process	1.67E-03
49	GO:0046686: response to cadmium ion	1.78E-03
50	GO:1901259: chloroplast rRNA processing	2.01E-03
51	GO:0042372: phylloquinone biosynthetic process	2.01E-03
52	GO:0006694: steroid biosynthetic process	2.01E-03
53	GO:0048509: regulation of meristem development	2.01E-03
54	GO:0009955: adaxial/abaxial pattern specification	2.01E-03
55	GO:0015995: chlorophyll biosynthetic process	2.26E-03
56	GO:0008272: sulfate transport	2.36E-03
57	GO:0045995: regulation of embryonic development	2.36E-03
58	GO:0007155: cell adhesion	2.73E-03
59	GO:0071555: cell wall organization	2.94E-03
60	GO:0009657: plastid organization	3.12E-03
61	GO:0006526: arginine biosynthetic process	3.12E-03
62	GO:0009808: lignin metabolic process	3.12E-03
63	GO:0016051: carbohydrate biosynthetic process	3.15E-03
64	GO:0000902: cell morphogenesis	3.53E-03
65	GO:0015780: nucleotide-sugar transport	3.53E-03
66	GO:0006839: mitochondrial transport	3.59E-03
67	GO:0035999: tetrahydrofolate interconversion	3.96E-03
68	GO:0043067: regulation of programmed cell death	3.96E-03
69	GO:0019538: protein metabolic process	4.40E-03
70	GO:0045036: protein targeting to chloroplast	4.40E-03
71	GO:0009073: aromatic amino acid family biosynthetic process	4.86E-03
72	GO:0006790: sulfur compound metabolic process	5.34E-03
73	GO:0050826: response to freezing	5.83E-03
74	GO:0006096: glycolytic process	6.45E-03
75	GO:0046854: phosphatidylinositol phosphorylation	6.86E-03
76	GO:0010025: wax biosynthetic process	7.40E-03
77	GO:0006071: glycerol metabolic process	7.40E-03
78	GO:0007010: cytoskeleton organization	7.95E-03
79	GO:0006629: lipid metabolic process	8.06E-03
80	GO:0010026: trichome differentiation	8.51E-03
81	GO:0006730: one-carbon metabolic process	9.69E-03
82	GO:0030245: cellulose catabolic process	9.69E-03
83	GO:0009294: DNA mediated transformation	1.03E-02
84	GO:0040007: growth	1.03E-02
85	GO:0042335: cuticle development	1.22E-02
86	GO:0016036: cellular response to phosphate starvation	1.25E-02
87	GO:0009793: embryo development ending in seed dormancy	1.27E-02
88	GO:0006520: cellular amino acid metabolic process	1.29E-02
89	GO:0010197: polar nucleus fusion	1.29E-02
90	GO:0048868: pollen tube development	1.29E-02
91	GO:0045490: pectin catabolic process	1.34E-02
92	GO:0007018: microtubule-based movement	1.36E-02
93	GO:0019252: starch biosynthetic process	1.42E-02
94	GO:0071554: cell wall organization or biogenesis	1.50E-02
95	GO:0016132: brassinosteroid biosynthetic process	1.50E-02
96	GO:0010583: response to cyclopentenone	1.57E-02
97	GO:0032502: developmental process	1.57E-02
98	GO:0007267: cell-cell signaling	1.79E-02
99	GO:0016126: sterol biosynthetic process	1.94E-02
100	GO:0009911: positive regulation of flower development	1.94E-02
101	GO:0010027: thylakoid membrane organization	1.94E-02
102	GO:0010029: regulation of seed germination	2.02E-02
103	GO:0009658: chloroplast organization	2.09E-02
104	GO:0016311: dephosphorylation	2.26E-02
105	GO:0009817: defense response to fungus, incompatible interaction	2.34E-02
106	GO:0048481: plant ovule development	2.34E-02
107	GO:0009813: flavonoid biosynthetic process	2.43E-02
108	GO:0000160: phosphorelay signal transduction system	2.43E-02
109	GO:0009834: plant-type secondary cell wall biogenesis	2.51E-02
110	GO:0007568: aging	2.60E-02
111	GO:0006869: lipid transport	3.39E-02
112	GO:0008643: carbohydrate transport	3.52E-02
113	GO:0009736: cytokinin-activated signaling pathway	4.11E-02
114	GO:0048367: shoot system development	4.73E-02
115	GO:0006412: translation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
4	GO:0019955: cytokine binding	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0046905: phytoene synthase activity	0.00E+00
10	GO:0050613: delta14-sterol reductase activity	0.00E+00
11	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
12	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
13	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
14	GO:0009885: transmembrane histidine kinase cytokinin receptor activity	0.00E+00
15	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
16	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
17	GO:0050614: delta24-sterol reductase activity	0.00E+00
18	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.13E-06
19	GO:0003878: ATP citrate synthase activity	9.86E-06
20	GO:0004831: tyrosine-tRNA ligase activity	1.52E-04
21	GO:0051996: squalene synthase activity	1.52E-04
22	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.52E-04
23	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.52E-04
24	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.52E-04
25	GO:0004560: alpha-L-fucosidase activity	1.52E-04
26	GO:0019843: rRNA binding	1.94E-04
27	GO:0046593: mandelonitrile lyase activity	3.47E-04
28	GO:0009884: cytokinin receptor activity	3.47E-04
29	GO:0004802: transketolase activity	3.47E-04
30	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.47E-04
31	GO:0004047: aminomethyltransferase activity	3.47E-04
32	GO:0004817: cysteine-tRNA ligase activity	3.47E-04
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.47E-04
34	GO:0070330: aromatase activity	5.68E-04
35	GO:0002161: aminoacyl-tRNA editing activity	5.68E-04
36	GO:0004148: dihydrolipoyl dehydrogenase activity	5.68E-04
37	GO:0005504: fatty acid binding	5.68E-04
38	GO:0005034: osmosensor activity	5.68E-04
39	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.68E-04
40	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.68E-04
41	GO:0043424: protein histidine kinase binding	6.20E-04
42	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.43E-04
43	GO:0030570: pectate lyase activity	8.07E-04
44	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.13E-04
45	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.13E-04
46	GO:0004812: aminoacyl-tRNA ligase activity	9.45E-04
47	GO:0045430: chalcone isomerase activity	1.08E-03
48	GO:0004845: uracil phosphoribosyltransferase activity	1.08E-03
49	GO:0016836: hydro-lyase activity	1.08E-03
50	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.08E-03
51	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.08E-03
52	GO:0018685: alkane 1-monooxygenase activity	1.36E-03
53	GO:0016758: transferase activity, transferring hexosyl groups	1.39E-03
54	GO:0016208: AMP binding	1.67E-03
55	GO:0008200: ion channel inhibitor activity	1.67E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.01E-03
57	GO:0016832: aldehyde-lyase activity	2.01E-03
58	GO:0102391: decanoate--CoA ligase activity	2.01E-03
59	GO:0051753: mannan synthase activity	2.01E-03
60	GO:0004849: uridine kinase activity	2.01E-03
61	GO:0051920: peroxiredoxin activity	2.01E-03
62	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.36E-03
63	GO:0019899: enzyme binding	2.36E-03
64	GO:0004467: long-chain fatty acid-CoA ligase activity	2.36E-03
65	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.36E-03
66	GO:0008194: UDP-glycosyltransferase activity	2.48E-03
67	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.73E-03
68	GO:0016209: antioxidant activity	2.73E-03
69	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.88E-03
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.53E-03
71	GO:0004673: protein histidine kinase activity	4.40E-03
72	GO:0051287: NAD binding	4.90E-03
73	GO:0000049: tRNA binding	5.34E-03
74	GO:0004565: beta-galactosidase activity	5.83E-03
75	GO:0000155: phosphorelay sensor kinase activity	5.83E-03
76	GO:0045735: nutrient reservoir activity	6.45E-03
77	GO:0080043: quercetin 3-O-glucosyltransferase activity	7.09E-03
78	GO:0080044: quercetin 7-O-glucosyltransferase activity	7.09E-03
79	GO:0016757: transferase activity, transferring glycosyl groups	8.28E-03
80	GO:0019706: protein-cysteine S-palmitoyltransferase activity	9.10E-03
81	GO:0008810: cellulase activity	1.03E-02
82	GO:0016829: lyase activity	1.05E-02
83	GO:0008514: organic anion transmembrane transporter activity	1.09E-02
84	GO:0008017: microtubule binding	1.41E-02
85	GO:0019901: protein kinase binding	1.42E-02
86	GO:0016491: oxidoreductase activity	1.70E-02
87	GO:0008483: transaminase activity	1.79E-02
88	GO:0016413: O-acetyltransferase activity	1.86E-02
89	GO:0003729: mRNA binding	2.04E-02
90	GO:0004721: phosphoprotein phosphatase activity	2.18E-02
91	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.34E-02
92	GO:0050660: flavin adenine dinucleotide binding	2.41E-02
93	GO:0005507: copper ion binding	2.60E-02
94	GO:0030145: manganese ion binding	2.60E-02
95	GO:0003746: translation elongation factor activity	2.78E-02
96	GO:0052689: carboxylic ester hydrolase activity	2.86E-02
97	GO:0003993: acid phosphatase activity	2.86E-02
98	GO:0003735: structural constituent of ribosome	3.12E-02
99	GO:0042803: protein homodimerization activity	3.24E-02
100	GO:0043621: protein self-association	3.52E-02
101	GO:0005198: structural molecule activity	3.61E-02
102	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.71E-02
103	GO:0009055: electron carrier activity	4.09E-02
104	GO:0003777: microtubule motor activity	4.42E-02
105	GO:0004650: polygalacturonase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	1.06E-20
3	GO:0009941: chloroplast envelope	1.37E-16
4	GO:0009507: chloroplast	2.59E-16
5	GO:0046658: anchored component of plasma membrane	2.82E-07
6	GO:0009346: citrate lyase complex	9.86E-06
7	GO:0009534: chloroplast thylakoid	4.12E-05
8	GO:0031225: anchored component of membrane	8.44E-05
9	GO:0009579: thylakoid	2.52E-04
10	GO:0031969: chloroplast membrane	8.97E-04
11	GO:0048046: apoplast	9.92E-04
12	GO:0009539: photosystem II reaction center	3.12E-03
13	GO:0005840: ribosome	3.19E-03
14	GO:0045298: tubulin complex	3.53E-03
15	GO:0005763: mitochondrial small ribosomal subunit	3.53E-03
16	GO:0009536: plastid	4.20E-03
17	GO:0000139: Golgi membrane	4.99E-03
18	GO:0000312: plastid small ribosomal subunit	6.33E-03
19	GO:0030659: cytoplasmic vesicle membrane	6.33E-03
20	GO:0030176: integral component of endoplasmic reticulum membrane	6.86E-03
21	GO:0009654: photosystem II oxygen evolving complex	8.51E-03
22	GO:0009532: plastid stroma	9.10E-03
23	GO:0009543: chloroplast thylakoid lumen	9.73E-03
24	GO:0005618: cell wall	1.11E-02
25	GO:0005871: kinesin complex	1.16E-02
26	GO:0009535: chloroplast thylakoid membrane	1.20E-02
27	GO:0009505: plant-type cell wall	1.58E-02
28	GO:0022626: cytosolic ribosome	1.58E-02
29	GO:0005778: peroxisomal membrane	1.79E-02
30	GO:0010319: stromule	1.79E-02
31	GO:0005777: peroxisome	1.99E-02
32	GO:0005576: extracellular region	2.17E-02
33	GO:0009707: chloroplast outer membrane	2.34E-02
34	GO:0005874: microtubule	2.50E-02
35	GO:0015934: large ribosomal subunit	2.60E-02
36	GO:0031977: thylakoid lumen	3.14E-02
37	GO:0016020: membrane	3.35E-02
38	GO:0005743: mitochondrial inner membrane	3.55E-02
39	GO:0005856: cytoskeleton	3.61E-02
40	GO:0005794: Golgi apparatus	3.96E-02
41	GO:0043231: intracellular membrane-bounded organelle	4.20E-02