GO Enrichment Analysis of Co-expressed Genes with
AT4G38225
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 3 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 4 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 5 | GO:0010027: thylakoid membrane organization | 3.73E-06 |
| 6 | GO:0010207: photosystem II assembly | 7.57E-06 |
| 7 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.90E-05 |
| 8 | GO:0042549: photosystem II stabilization | 2.87E-05 |
| 9 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 5.48E-05 |
| 10 | GO:0032544: plastid translation | 9.00E-05 |
| 11 | GO:0043953: protein transport by the Tat complex | 1.16E-04 |
| 12 | GO:0065002: intracellular protein transmembrane transport | 1.16E-04 |
| 13 | GO:0034337: RNA folding | 1.16E-04 |
| 14 | GO:0071457: cellular response to ozone | 2.69E-04 |
| 15 | GO:0035304: regulation of protein dephosphorylation | 2.69E-04 |
| 16 | GO:0016560: protein import into peroxisome matrix, docking | 2.69E-04 |
| 17 | GO:0080005: photosystem stoichiometry adjustment | 2.69E-04 |
| 18 | GO:0018026: peptidyl-lysine monomethylation | 2.69E-04 |
| 19 | GO:0009662: etioplast organization | 2.69E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.69E-04 |
| 21 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 4.45E-04 |
| 22 | GO:0090391: granum assembly | 4.45E-04 |
| 23 | GO:0051604: protein maturation | 4.45E-04 |
| 24 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.38E-04 |
| 25 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 6.38E-04 |
| 26 | GO:0071484: cellular response to light intensity | 6.38E-04 |
| 27 | GO:0009152: purine ribonucleotide biosynthetic process | 6.38E-04 |
| 28 | GO:0046653: tetrahydrofolate metabolic process | 6.38E-04 |
| 29 | GO:0045727: positive regulation of translation | 8.47E-04 |
| 30 | GO:0071486: cellular response to high light intensity | 8.47E-04 |
| 31 | GO:0006109: regulation of carbohydrate metabolic process | 8.47E-04 |
| 32 | GO:0071493: cellular response to UV-B | 1.07E-03 |
| 33 | GO:0016554: cytidine to uridine editing | 1.31E-03 |
| 34 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.31E-03 |
| 35 | GO:0000470: maturation of LSU-rRNA | 1.31E-03 |
| 36 | GO:0015995: chlorophyll biosynthetic process | 1.56E-03 |
| 37 | GO:1901259: chloroplast rRNA processing | 1.56E-03 |
| 38 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.56E-03 |
| 39 | GO:0010196: nonphotochemical quenching | 1.84E-03 |
| 40 | GO:1900057: positive regulation of leaf senescence | 1.84E-03 |
| 41 | GO:0006400: tRNA modification | 1.84E-03 |
| 42 | GO:0009772: photosynthetic electron transport in photosystem II | 1.84E-03 |
| 43 | GO:0009735: response to cytokinin | 1.89E-03 |
| 44 | GO:0008610: lipid biosynthetic process | 2.13E-03 |
| 45 | GO:0009642: response to light intensity | 2.13E-03 |
| 46 | GO:0006605: protein targeting | 2.13E-03 |
| 47 | GO:0019430: removal of superoxide radicals | 2.43E-03 |
| 48 | GO:0015996: chlorophyll catabolic process | 2.43E-03 |
| 49 | GO:0006098: pentose-phosphate shunt | 2.74E-03 |
| 50 | GO:0000373: Group II intron splicing | 2.74E-03 |
| 51 | GO:1900865: chloroplast RNA modification | 3.07E-03 |
| 52 | GO:0010205: photoinhibition | 3.07E-03 |
| 53 | GO:0015979: photosynthesis | 3.61E-03 |
| 54 | GO:0009773: photosynthetic electron transport in photosystem I | 3.76E-03 |
| 55 | GO:0006364: rRNA processing | 3.76E-03 |
| 56 | GO:0019684: photosynthesis, light reaction | 3.76E-03 |
| 57 | GO:0009073: aromatic amino acid family biosynthetic process | 3.76E-03 |
| 58 | GO:0043085: positive regulation of catalytic activity | 3.76E-03 |
| 59 | GO:1903507: negative regulation of nucleic acid-templated transcription | 3.76E-03 |
| 60 | GO:0016485: protein processing | 3.76E-03 |
| 61 | GO:0010628: positive regulation of gene expression | 4.50E-03 |
| 62 | GO:0009718: anthocyanin-containing compound biosynthetic process | 4.50E-03 |
| 63 | GO:0006094: gluconeogenesis | 4.50E-03 |
| 64 | GO:0008152: metabolic process | 5.65E-03 |
| 65 | GO:0009695: jasmonic acid biosynthetic process | 6.56E-03 |
| 66 | GO:0031408: oxylipin biosynthetic process | 7.00E-03 |
| 67 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 7.46E-03 |
| 68 | GO:0009686: gibberellin biosynthetic process | 7.92E-03 |
| 69 | GO:0071369: cellular response to ethylene stimulus | 7.92E-03 |
| 70 | GO:0040007: growth | 7.92E-03 |
| 71 | GO:0016117: carotenoid biosynthetic process | 8.88E-03 |
| 72 | GO:0000413: protein peptidyl-prolyl isomerization | 9.38E-03 |
| 73 | GO:0009451: RNA modification | 9.43E-03 |
| 74 | GO:0071472: cellular response to salt stress | 9.89E-03 |
| 75 | GO:0006662: glycerol ether metabolic process | 9.89E-03 |
| 76 | GO:0010268: brassinosteroid homeostasis | 9.89E-03 |
| 77 | GO:0016132: brassinosteroid biosynthetic process | 1.15E-02 |
| 78 | GO:0005975: carbohydrate metabolic process | 1.19E-02 |
| 79 | GO:0016032: viral process | 1.20E-02 |
| 80 | GO:0009567: double fertilization forming a zygote and endosperm | 1.31E-02 |
| 81 | GO:0016125: sterol metabolic process | 1.31E-02 |
| 82 | GO:0071805: potassium ion transmembrane transport | 1.37E-02 |
| 83 | GO:0001666: response to hypoxia | 1.49E-02 |
| 84 | GO:0009817: defense response to fungus, incompatible interaction | 1.80E-02 |
| 85 | GO:0000160: phosphorelay signal transduction system | 1.86E-02 |
| 86 | GO:0048527: lateral root development | 1.99E-02 |
| 87 | GO:0009853: photorespiration | 2.12E-02 |
| 88 | GO:0034599: cellular response to oxidative stress | 2.19E-02 |
| 89 | GO:0032259: methylation | 2.51E-02 |
| 90 | GO:0055114: oxidation-reduction process | 2.56E-02 |
| 91 | GO:0006397: mRNA processing | 2.74E-02 |
| 92 | GO:0006855: drug transmembrane transport | 2.84E-02 |
| 93 | GO:0031347: regulation of defense response | 2.91E-02 |
| 94 | GO:0006813: potassium ion transport | 3.15E-02 |
| 95 | GO:0009736: cytokinin-activated signaling pathway | 3.15E-02 |
| 96 | GO:0043086: negative regulation of catalytic activity | 3.54E-02 |
| 97 | GO:0006096: glycolytic process | 3.54E-02 |
| 98 | GO:0009416: response to light stimulus | 4.63E-02 |
| 99 | GO:0009058: biosynthetic process | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 1.00E-04 |
| 5 | GO:0010242: oxygen evolving activity | 1.16E-04 |
| 6 | GO:0051777: ent-kaurenoate oxidase activity | 1.16E-04 |
| 7 | GO:0004856: xylulokinase activity | 1.16E-04 |
| 8 | GO:0004321: fatty-acyl-CoA synthase activity | 1.16E-04 |
| 9 | GO:0034256: chlorophyll(ide) b reductase activity | 1.16E-04 |
| 10 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.16E-04 |
| 11 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.16E-04 |
| 12 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.16E-04 |
| 13 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.69E-04 |
| 14 | GO:0008266: poly(U) RNA binding | 2.81E-04 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.63E-04 |
| 16 | GO:0005528: FK506 binding | 3.91E-04 |
| 17 | GO:0004751: ribose-5-phosphate isomerase activity | 4.45E-04 |
| 18 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.45E-04 |
| 19 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.45E-04 |
| 20 | GO:0004176: ATP-dependent peptidase activity | 4.74E-04 |
| 21 | GO:0016851: magnesium chelatase activity | 6.38E-04 |
| 22 | GO:0043023: ribosomal large subunit binding | 6.38E-04 |
| 23 | GO:0001872: (1->3)-beta-D-glucan binding | 6.38E-04 |
| 24 | GO:0016279: protein-lysine N-methyltransferase activity | 8.47E-04 |
| 25 | GO:0004045: aminoacyl-tRNA hydrolase activity | 8.47E-04 |
| 26 | GO:0005525: GTP binding | 1.05E-03 |
| 27 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.07E-03 |
| 28 | GO:0004784: superoxide dismutase activity | 1.31E-03 |
| 29 | GO:0042578: phosphoric ester hydrolase activity | 1.31E-03 |
| 30 | GO:0004332: fructose-bisphosphate aldolase activity | 1.31E-03 |
| 31 | GO:0008236: serine-type peptidase activity | 1.64E-03 |
| 32 | GO:0004620: phospholipase activity | 1.84E-03 |
| 33 | GO:0043022: ribosome binding | 2.13E-03 |
| 34 | GO:0008312: 7S RNA binding | 2.13E-03 |
| 35 | GO:0016491: oxidoreductase activity | 2.45E-03 |
| 36 | GO:0016207: 4-coumarate-CoA ligase activity | 2.74E-03 |
| 37 | GO:0008047: enzyme activator activity | 3.41E-03 |
| 38 | GO:0004565: beta-galactosidase activity | 4.50E-03 |
| 39 | GO:0009982: pseudouridine synthase activity | 4.50E-03 |
| 40 | GO:0003714: transcription corepressor activity | 6.12E-03 |
| 41 | GO:0004857: enzyme inhibitor activity | 6.12E-03 |
| 42 | GO:0015079: potassium ion transmembrane transporter activity | 6.56E-03 |
| 43 | GO:0043424: protein histidine kinase binding | 6.56E-03 |
| 44 | GO:0047134: protein-disulfide reductase activity | 8.88E-03 |
| 45 | GO:0010181: FMN binding | 1.04E-02 |
| 46 | GO:0050662: coenzyme binding | 1.04E-02 |
| 47 | GO:0004791: thioredoxin-disulfide reductase activity | 1.04E-02 |
| 48 | GO:0003743: translation initiation factor activity | 1.08E-02 |
| 49 | GO:0000156: phosphorelay response regulator activity | 1.26E-02 |
| 50 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.26E-02 |
| 51 | GO:0008168: methyltransferase activity | 1.38E-02 |
| 52 | GO:0030247: polysaccharide binding | 1.67E-02 |
| 53 | GO:0008233: peptidase activity | 1.75E-02 |
| 54 | GO:0015238: drug transmembrane transporter activity | 1.86E-02 |
| 55 | GO:0003723: RNA binding | 1.96E-02 |
| 56 | GO:0016787: hydrolase activity | 1.99E-02 |
| 57 | GO:0003746: translation elongation factor activity | 2.12E-02 |
| 58 | GO:0004519: endonuclease activity | 2.85E-02 |
| 59 | GO:0005215: transporter activity | 2.86E-02 |
| 60 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 3.79E-02 |
| 61 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 3.79E-02 |
| 62 | GO:0016874: ligase activity | 3.87E-02 |
| 63 | GO:0022857: transmembrane transporter activity | 3.87E-02 |
| 64 | GO:0015035: protein disulfide oxidoreductase activity | 4.13E-02 |
| 65 | GO:0003729: mRNA binding | 4.13E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043233: organelle lumen | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.12E-29 |
| 4 | GO:0009570: chloroplast stroma | 1.64E-12 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.57E-10 |
| 6 | GO:0009534: chloroplast thylakoid | 4.91E-09 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 8.32E-09 |
| 8 | GO:0009579: thylakoid | 1.10E-06 |
| 9 | GO:0031977: thylakoid lumen | 1.58E-05 |
| 10 | GO:0009941: chloroplast envelope | 4.62E-05 |
| 11 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 9.00E-05 |
| 12 | GO:0009515: granal stacked thylakoid | 1.16E-04 |
| 13 | GO:0031361: integral component of thylakoid membrane | 1.16E-04 |
| 14 | GO:0080085: signal recognition particle, chloroplast targeting | 2.69E-04 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 4.32E-04 |
| 16 | GO:0005782: peroxisomal matrix | 4.45E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 4.45E-04 |
| 18 | GO:0033281: TAT protein transport complex | 4.45E-04 |
| 19 | GO:0010287: plastoglobule | 8.44E-04 |
| 20 | GO:0009526: plastid envelope | 8.47E-04 |
| 21 | GO:0019898: extrinsic component of membrane | 8.79E-04 |
| 22 | GO:0055035: plastid thylakoid membrane | 1.07E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 1.33E-03 |
| 24 | GO:0009533: chloroplast stromal thylakoid | 1.84E-03 |
| 25 | GO:0008180: COP9 signalosome | 2.74E-03 |
| 26 | GO:0055028: cortical microtubule | 3.41E-03 |
| 27 | GO:0032040: small-subunit processome | 4.13E-03 |
| 28 | GO:0030095: chloroplast photosystem II | 4.89E-03 |
| 29 | GO:0000312: plastid small ribosomal subunit | 4.89E-03 |
| 30 | GO:0009532: plastid stroma | 7.00E-03 |
| 31 | GO:0005777: peroxisome | 1.23E-02 |
| 32 | GO:0031969: chloroplast membrane | 1.78E-02 |
| 33 | GO:0019005: SCF ubiquitin ligase complex | 1.80E-02 |
| 34 | GO:0005840: ribosome | 2.68E-02 |
| 35 | GO:0043231: intracellular membrane-bounded organelle | 2.89E-02 |
| 36 | GO:0000502: proteasome complex | 3.15E-02 |
| 37 | GO:0005623: cell | 4.83E-02 |