co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0045176: apical protein localization	0.00E+00
5	GO:0006223: uracil salvage	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
9	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
10	GO:0042407: cristae formation	0.00E+00
11	GO:0042493: response to drug	0.00E+00
12	GO:0042371: vitamin K biosynthetic process	0.00E+00
13	GO:0006399: tRNA metabolic process	0.00E+00
14	GO:0032544: plastid translation	2.12E-14
15	GO:0006412: translation	1.34E-13
16	GO:0042254: ribosome biogenesis	4.28E-09
17	GO:0010027: thylakoid membrane organization	2.59E-06
18	GO:0015979: photosynthesis	3.50E-06
19	GO:0009658: chloroplast organization	1.12E-05
20	GO:0006518: peptide metabolic process	1.39E-05
21	GO:0009735: response to cytokinin	4.52E-05
22	GO:0010207: photosystem II assembly	6.23E-05
23	GO:0010236: plastoquinone biosynthetic process	8.85E-05
24	GO:0042372: phylloquinone biosynthetic process	1.76E-04
25	GO:0042335: cuticle development	2.51E-04
26	GO:0060627: regulation of vesicle-mediated transport	2.92E-04
27	GO:0043489: RNA stabilization	2.92E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	2.92E-04
29	GO:0000481: maturation of 5S rRNA	2.92E-04
30	GO:1904964: positive regulation of phytol biosynthetic process	2.92E-04
31	GO:1902458: positive regulation of stomatal opening	2.92E-04
32	GO:0034337: RNA folding	2.92E-04
33	GO:0071588: hydrogen peroxide mediated signaling pathway	2.92E-04
34	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.92E-04
35	GO:0009657: plastid organization	3.57E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.40E-04
37	GO:0006423: cysteinyl-tRNA aminoacylation	6.40E-04
38	GO:0006729: tetrahydrobiopterin biosynthetic process	6.40E-04
39	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.40E-04
40	GO:0045037: protein import into chloroplast stroma	7.84E-04
41	GO:0006006: glucose metabolic process	8.88E-04
42	GO:0030036: actin cytoskeleton organization	8.88E-04
43	GO:0010143: cutin biosynthetic process	9.97E-04
44	GO:0010540: basipetal auxin transport	9.97E-04
45	GO:2001295: malonyl-CoA biosynthetic process	1.04E-03
46	GO:0009790: embryo development	1.06E-03
47	GO:0051639: actin filament network formation	1.48E-03
48	GO:0006241: CTP biosynthetic process	1.48E-03
49	GO:0019048: modulation by virus of host morphology or physiology	1.48E-03
50	GO:0009650: UV protection	1.48E-03
51	GO:0051016: barbed-end actin filament capping	1.48E-03
52	GO:0006424: glutamyl-tRNA aminoacylation	1.48E-03
53	GO:0006165: nucleoside diphosphate phosphorylation	1.48E-03
54	GO:1901332: negative regulation of lateral root development	1.48E-03
55	GO:0006228: UTP biosynthetic process	1.48E-03
56	GO:0031048: chromatin silencing by small RNA	1.48E-03
57	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.48E-03
58	GO:2001141: regulation of RNA biosynthetic process	1.48E-03
59	GO:0009411: response to UV	1.98E-03
60	GO:0051322: anaphase	1.99E-03
61	GO:0006183: GTP biosynthetic process	1.99E-03
62	GO:0051567: histone H3-K9 methylation	1.99E-03
63	GO:0044206: UMP salvage	1.99E-03
64	GO:0009956: radial pattern formation	1.99E-03
65	GO:0006808: regulation of nitrogen utilization	1.99E-03
66	GO:0051764: actin crosslink formation	1.99E-03
67	GO:0009306: protein secretion	2.15E-03
68	GO:0000413: protein peptidyl-prolyl isomerization	2.51E-03
69	GO:0032543: mitochondrial translation	2.54E-03
70	GO:0045038: protein import into chloroplast thylakoid membrane	2.54E-03
71	GO:0043097: pyrimidine nucleoside salvage	2.54E-03
72	GO:0006461: protein complex assembly	2.54E-03
73	GO:0009409: response to cold	2.84E-03
74	GO:0010190: cytochrome b6f complex assembly	3.14E-03
75	GO:0006206: pyrimidine nucleobase metabolic process	3.14E-03
76	GO:0032973: amino acid export	3.14E-03
77	GO:0016458: gene silencing	3.14E-03
78	GO:0048827: phyllome development	3.14E-03
79	GO:0042549: photosystem II stabilization	3.14E-03
80	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.14E-03
81	GO:0009793: embryo development ending in seed dormancy	3.24E-03
82	GO:0032502: developmental process	3.57E-03
83	GO:0009955: adaxial/abaxial pattern specification	3.77E-03
84	GO:0006694: steroid biosynthetic process	3.77E-03
85	GO:1901259: chloroplast rRNA processing	3.77E-03
86	GO:0030488: tRNA methylation	3.77E-03
87	GO:0010189: vitamin E biosynthetic process	3.77E-03
88	GO:0009854: oxidative photosynthetic carbon pathway	3.77E-03
89	GO:0010019: chloroplast-nucleus signaling pathway	3.77E-03
90	GO:0009416: response to light stimulus	4.43E-03
91	GO:0009772: photosynthetic electron transport in photosystem II	4.45E-03
92	GO:0043090: amino acid import	4.45E-03
93	GO:0051693: actin filament capping	4.45E-03
94	GO:0030497: fatty acid elongation	4.45E-03
95	GO:0006400: tRNA modification	4.45E-03
96	GO:0048528: post-embryonic root development	4.45E-03
97	GO:0008610: lipid biosynthetic process	5.17E-03
98	GO:0006605: protein targeting	5.17E-03
99	GO:0042255: ribosome assembly	5.17E-03
100	GO:0032508: DNA duplex unwinding	5.17E-03
101	GO:0006353: DNA-templated transcription, termination	5.17E-03
102	GO:2000070: regulation of response to water deprivation	5.17E-03
103	GO:0045010: actin nucleation	5.17E-03
104	GO:0015995: chlorophyll biosynthetic process	5.68E-03
105	GO:0071482: cellular response to light stimulus	5.92E-03
106	GO:0015996: chlorophyll catabolic process	5.92E-03
107	GO:0007186: G-protein coupled receptor signaling pathway	5.92E-03
108	GO:0006526: arginine biosynthetic process	5.92E-03
109	GO:0009808: lignin metabolic process	5.92E-03
110	GO:0006633: fatty acid biosynthetic process	6.24E-03
111	GO:0018298: protein-chromophore linkage	6.29E-03
112	GO:0009051: pentose-phosphate shunt, oxidative branch	6.71E-03
113	GO:0010206: photosystem II repair	6.71E-03
114	GO:0080144: amino acid homeostasis	6.71E-03
115	GO:0000902: cell morphogenesis	6.71E-03
116	GO:0009631: cold acclimation	7.28E-03
117	GO:0043067: regulation of programmed cell death	7.54E-03
118	GO:0009637: response to blue light	7.98E-03
119	GO:0034599: cellular response to oxidative stress	8.35E-03
120	GO:0030422: production of siRNA involved in RNA interference	8.40E-03
121	GO:0043069: negative regulation of programmed cell death	8.40E-03
122	GO:0006949: syncytium formation	8.40E-03
123	GO:0000038: very long-chain fatty acid metabolic process	9.30E-03
124	GO:0009773: photosynthetic electron transport in photosystem I	9.30E-03
125	GO:0009073: aromatic amino acid family biosynthetic process	9.30E-03
126	GO:0043085: positive regulation of catalytic activity	9.30E-03
127	GO:0006352: DNA-templated transcription, initiation	9.30E-03
128	GO:0006415: translational termination	9.30E-03
129	GO:0016024: CDP-diacylglycerol biosynthetic process	1.02E-02
130	GO:0010114: response to red light	1.03E-02
131	GO:0010102: lateral root morphogenesis	1.12E-02
132	GO:0010229: inflorescence development	1.12E-02
133	GO:0009933: meristem structural organization	1.22E-02
134	GO:0007015: actin filament organization	1.22E-02
135	GO:0019253: reductive pentose-phosphate cycle	1.22E-02
136	GO:0009825: multidimensional cell growth	1.32E-02
137	GO:0010025: wax biosynthetic process	1.43E-02
138	GO:0006833: water transport	1.43E-02
139	GO:0009116: nucleoside metabolic process	1.54E-02
140	GO:0000027: ribosomal large subunit assembly	1.54E-02
141	GO:0051017: actin filament bundle assembly	1.54E-02
142	GO:0006508: proteolysis	1.64E-02
143	GO:0006096: glycolytic process	1.65E-02
144	GO:0006418: tRNA aminoacylation for protein translation	1.65E-02
145	GO:0009768: photosynthesis, light harvesting in photosystem I	1.65E-02
146	GO:0061077: chaperone-mediated protein folding	1.76E-02
147	GO:0006306: DNA methylation	1.76E-02
148	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.00E-02
149	GO:0016117: carotenoid biosynthetic process	2.25E-02
150	GO:0006869: lipid transport	2.28E-02
151	GO:0000226: microtubule cytoskeleton organization	2.37E-02
152	GO:0034220: ion transmembrane transport	2.37E-02
153	GO:0006520: cellular amino acid metabolic process	2.50E-02
154	GO:0006662: glycerol ether metabolic process	2.50E-02
155	GO:0010305: leaf vascular tissue pattern formation	2.50E-02
156	GO:0010197: polar nucleus fusion	2.50E-02
157	GO:0010182: sugar mediated signaling pathway	2.50E-02
158	GO:0006342: chromatin silencing	2.50E-02
159	GO:0007018: microtubule-based movement	2.64E-02
160	GO:0048825: cotyledon development	2.77E-02
161	GO:0000302: response to reactive oxygen species	2.91E-02
162	GO:0002229: defense response to oomycetes	2.91E-02
163	GO:0016132: brassinosteroid biosynthetic process	2.91E-02
164	GO:0008152: metabolic process	2.98E-02
165	GO:0010090: trichome morphogenesis	3.19E-02
166	GO:0040008: regulation of growth	3.28E-02
167	GO:0009828: plant-type cell wall loosening	3.34E-02
168	GO:0071805: potassium ion transmembrane transport	3.48E-02
169	GO:0000910: cytokinesis	3.63E-02
170	GO:0051607: defense response to virus	3.63E-02
171	GO:0009911: positive regulation of flower development	3.78E-02
172	GO:0009816: defense response to bacterium, incompatible interaction	3.93E-02
173	GO:0009734: auxin-activated signaling pathway	4.03E-02
174	GO:0016311: dephosphorylation	4.41E-02
175	GO:0048481: plant ovule development	4.57E-02
176	GO:0009817: defense response to fungus, incompatible interaction	4.57E-02
177	GO:0010311: lateral root formation	4.73E-02
178	GO:0009834: plant-type secondary cell wall biogenesis	4.89E-02
179	GO:0009407: toxin catabolic process	4.89E-02
180	GO:0010218: response to far red light	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
3	GO:0008887: glycerate kinase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
9	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
10	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
11	GO:0050614: delta24-sterol reductase activity	0.00E+00
12	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
13	GO:0019843: rRNA binding	9.23E-22
14	GO:0003735: structural constituent of ribosome	6.45E-15
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.59E-08
16	GO:0005528: FK506 binding	3.63E-06
17	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.39E-05
18	GO:0004560: alpha-L-fucosidase activity	2.92E-04
19	GO:0080132: fatty acid alpha-hydroxylase activity	2.92E-04
20	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.92E-04
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.92E-04
22	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.92E-04
23	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.92E-04
24	GO:0016788: hydrolase activity, acting on ester bonds	5.78E-04
25	GO:0004817: cysteine-tRNA ligase activity	6.40E-04
26	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.40E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.40E-04
28	GO:0008266: poly(U) RNA binding	9.97E-04
29	GO:0017150: tRNA dihydrouridine synthase activity	1.04E-03
30	GO:0050734: hydroxycinnamoyltransferase activity	1.04E-03
31	GO:0002161: aminoacyl-tRNA editing activity	1.04E-03
32	GO:0004148: dihydrolipoyl dehydrogenase activity	1.04E-03
33	GO:0004075: biotin carboxylase activity	1.04E-03
34	GO:0030267: glyoxylate reductase (NADP) activity	1.04E-03
35	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.04E-03
36	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.04E-03
37	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.48E-03
38	GO:0016149: translation release factor activity, codon specific	1.48E-03
39	GO:0035197: siRNA binding	1.48E-03
40	GO:0004550: nucleoside diphosphate kinase activity	1.48E-03
41	GO:0016851: magnesium chelatase activity	1.48E-03
42	GO:0043023: ribosomal large subunit binding	1.48E-03
43	GO:0008097: 5S rRNA binding	1.48E-03
44	GO:0004176: ATP-dependent peptidase activity	1.66E-03
45	GO:0016987: sigma factor activity	1.99E-03
46	GO:0052793: pectin acetylesterase activity	1.99E-03
47	GO:0043495: protein anchor	1.99E-03
48	GO:0004659: prenyltransferase activity	1.99E-03
49	GO:0001053: plastid sigma factor activity	1.99E-03
50	GO:0004845: uracil phosphoribosyltransferase activity	1.99E-03
51	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.99E-03
52	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.99E-03
53	GO:0009922: fatty acid elongase activity	2.54E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.54E-03
55	GO:0004040: amidase activity	2.54E-03
56	GO:0003989: acetyl-CoA carboxylase activity	2.54E-03
57	GO:0004130: cytochrome-c peroxidase activity	3.14E-03
58	GO:0016208: AMP binding	3.14E-03
59	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.14E-03
60	GO:0016688: L-ascorbate peroxidase activity	3.14E-03
61	GO:0008200: ion channel inhibitor activity	3.14E-03
62	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.14E-03
63	GO:0015631: tubulin binding	3.77E-03
64	GO:0004849: uridine kinase activity	3.77E-03
65	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.77E-03
66	GO:0051920: peroxiredoxin activity	3.77E-03
67	GO:0051015: actin filament binding	3.80E-03
68	GO:0008237: metallopeptidase activity	4.30E-03
69	GO:0052689: carboxylic ester hydrolase activity	4.31E-03
70	GO:0019899: enzyme binding	4.45E-03
71	GO:0004620: phospholipase activity	4.45E-03
72	GO:0016168: chlorophyll binding	5.10E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	5.17E-03
74	GO:0016209: antioxidant activity	5.17E-03
75	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.29E-03
76	GO:0003747: translation release factor activity	6.71E-03
77	GO:0004222: metalloendopeptidase activity	6.94E-03
78	GO:0047617: acyl-CoA hydrolase activity	7.54E-03
79	GO:0008047: enzyme activator activity	8.40E-03
80	GO:0050661: NADP binding	9.10E-03
81	GO:0004521: endoribonuclease activity	1.02E-02
82	GO:0000049: tRNA binding	1.02E-02
83	GO:0008081: phosphoric diester hydrolase activity	1.12E-02
84	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.22E-02
85	GO:0051287: NAD binding	1.25E-02
86	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.43E-02
87	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.43E-02
88	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.43E-02
89	GO:0031409: pigment binding	1.43E-02
90	GO:0051536: iron-sulfur cluster binding	1.54E-02
91	GO:0015079: potassium ion transmembrane transporter activity	1.65E-02
92	GO:0004707: MAP kinase activity	1.76E-02
93	GO:0022891: substrate-specific transmembrane transporter activity	2.00E-02
94	GO:0016746: transferase activity, transferring acyl groups	2.05E-02
95	GO:0003727: single-stranded RNA binding	2.12E-02
96	GO:0004871: signal transducer activity	2.15E-02
97	GO:0047134: protein-disulfide reductase activity	2.25E-02
98	GO:0004812: aminoacyl-tRNA ligase activity	2.25E-02
99	GO:0008080: N-acetyltransferase activity	2.50E-02
100	GO:0004791: thioredoxin-disulfide reductase activity	2.64E-02
101	GO:0003729: mRNA binding	2.96E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.19E-02
103	GO:0016791: phosphatase activity	3.34E-02
104	GO:0008017: microtubule binding	3.59E-02
105	GO:0015250: water channel activity	3.78E-02
106	GO:0008289: lipid binding	3.97E-02
107	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.41E-02
108	GO:0008236: serine-type peptidase activity	4.41E-02
109	GO:0015238: drug transmembrane transporter activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009507: chloroplast	3.90E-52
3	GO:0009570: chloroplast stroma	2.49E-42
4	GO:0009941: chloroplast envelope	1.87E-40
5	GO:0009579: thylakoid	4.79E-23
6	GO:0009535: chloroplast thylakoid membrane	9.17E-19
7	GO:0009543: chloroplast thylakoid lumen	7.96E-17
8	GO:0005840: ribosome	1.57E-16
9	GO:0031977: thylakoid lumen	2.27E-16
10	GO:0009534: chloroplast thylakoid	2.30E-09
11	GO:0009536: plastid	1.22E-06
12	GO:0000311: plastid large ribosomal subunit	4.17E-05
13	GO:0046658: anchored component of plasma membrane	6.50E-05
14	GO:0015934: large ribosomal subunit	1.15E-04
15	GO:0009654: photosystem II oxygen evolving complex	1.20E-04
16	GO:0009547: plastid ribosome	2.92E-04
17	GO:0019898: extrinsic component of membrane	3.37E-04
18	GO:0008290: F-actin capping protein complex	6.40E-04
19	GO:0005884: actin filament	6.86E-04
20	GO:0009505: plant-type cell wall	7.52E-04
21	GO:0016020: membrane	8.31E-04
22	GO:0030095: chloroplast photosystem II	9.97E-04
23	GO:0009528: plastid inner membrane	1.04E-03
24	GO:0010007: magnesium chelatase complex	1.04E-03
25	GO:0022626: cytosolic ribosome	1.09E-03
26	GO:0032432: actin filament bundle	1.48E-03
27	GO:0005719: nuclear euchromatin	1.48E-03
28	GO:0009527: plastid outer membrane	1.99E-03
29	GO:0072686: mitotic spindle	2.54E-03
30	GO:0009523: photosystem II	3.12E-03
31	GO:0031209: SCAR complex	3.14E-03
32	GO:0010319: stromule	4.30E-03
33	GO:0009533: chloroplast stromal thylakoid	4.45E-03
34	GO:0030529: intracellular ribonucleoprotein complex	4.82E-03
35	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.71E-03
36	GO:0000922: spindle pole	6.71E-03
37	GO:0005763: mitochondrial small ribosomal subunit	6.71E-03
38	GO:0015030: Cajal body	7.54E-03
39	GO:0055028: cortical microtubule	8.40E-03
40	GO:0031225: anchored component of membrane	9.63E-03
41	GO:0032040: small-subunit processome	1.02E-02
42	GO:0009508: plastid chromosome	1.12E-02
43	GO:0009574: preprophase band	1.12E-02
44	GO:0000312: plastid small ribosomal subunit	1.22E-02
45	GO:0030076: light-harvesting complex	1.32E-02
46	GO:0031969: chloroplast membrane	1.61E-02
47	GO:0042651: thylakoid membrane	1.65E-02
48	GO:0015935: small ribosomal subunit	1.76E-02
49	GO:0009532: plastid stroma	1.76E-02
50	GO:0009706: chloroplast inner membrane	1.99E-02
51	GO:0005871: kinesin complex	2.25E-02
52	GO:0010287: plastoglobule	2.36E-02
53	GO:0005770: late endosome	2.50E-02
54	GO:0009522: photosystem I	2.64E-02
55	GO:0009295: nucleoid	3.48E-02
56	GO:0005778: peroxisomal membrane	3.48E-02
57	GO:0009707: chloroplast outer membrane	4.57E-02