Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G35920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010394: homogalacturonan metabolic process0.00E+00
2GO:0015739: sialic acid transport0.00E+00
3GO:0050732: negative regulation of peptidyl-tyrosine phosphorylation0.00E+00
4GO:0006223: uracil salvage0.00E+00
5GO:0080094: response to trehalose-6-phosphate0.00E+00
6GO:0071555: cell wall organization1.62E-05
7GO:0006633: fatty acid biosynthetic process2.06E-05
8GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.89E-05
9GO:0006546: glycine catabolic process5.21E-05
10GO:0007017: microtubule-based process1.10E-04
11GO:0048640: negative regulation of developmental growth2.80E-04
12GO:0045488: pectin metabolic process2.80E-04
13GO:1902458: positive regulation of stomatal opening2.80E-04
14GO:0071588: hydrogen peroxide mediated signaling pathway2.80E-04
15GO:0019510: S-adenosylhomocysteine catabolic process2.80E-04
16GO:0060627: regulation of vesicle-mediated transport2.80E-04
17GO:0006169: adenosine salvage2.80E-04
18GO:0032544: plastid translation3.35E-04
19GO:0015780: nucleotide-sugar transport4.05E-04
20GO:0007267: cell-cell signaling4.74E-04
21GO:0033353: S-adenosylmethionine cycle6.14E-04
22GO:0015786: UDP-glucose transport6.14E-04
23GO:1903426: regulation of reactive oxygen species biosynthetic process6.14E-04
24GO:0030388: fructose 1,6-bisphosphate metabolic process6.14E-04
25GO:2000123: positive regulation of stomatal complex development6.14E-04
26GO:0009773: photosynthetic electron transport in photosystem I6.45E-04
27GO:0045037: protein import into chloroplast stroma7.38E-04
28GO:0030036: actin cytoskeleton organization8.37E-04
29GO:0010020: chloroplast fission9.39E-04
30GO:0006518: peptide metabolic process9.96E-04
31GO:0006696: ergosterol biosynthetic process9.96E-04
32GO:2001295: malonyl-CoA biosynthetic process9.96E-04
33GO:0015783: GDP-fucose transport9.96E-04
34GO:0090506: axillary shoot meristem initiation9.96E-04
35GO:0006000: fructose metabolic process9.96E-04
36GO:0009833: plant-type primary cell wall biogenesis1.16E-03
37GO:0051016: barbed-end actin filament capping1.42E-03
38GO:0031048: chromatin silencing by small RNA1.42E-03
39GO:0043572: plastid fission1.42E-03
40GO:0072334: UDP-galactose transmembrane transport1.42E-03
41GO:0019048: modulation by virus of host morphology or physiology1.42E-03
42GO:0008643: carbohydrate transport1.56E-03
43GO:0016998: cell wall macromolecule catabolic process1.56E-03
44GO:0055114: oxidation-reduction process1.73E-03
45GO:0042538: hyperosmotic salinity response1.89E-03
46GO:2000038: regulation of stomatal complex development1.91E-03
47GO:0051567: histone H3-K9 methylation1.91E-03
48GO:0008295: spermidine biosynthetic process1.91E-03
49GO:0044206: UMP salvage1.91E-03
50GO:0010037: response to carbon dioxide1.91E-03
51GO:0009956: radial pattern formation1.91E-03
52GO:0015976: carbon utilization1.91E-03
53GO:0019464: glycine decarboxylation via glycine cleavage system1.91E-03
54GO:0009765: photosynthesis, light harvesting1.91E-03
55GO:0006183: GTP biosynthetic process1.91E-03
56GO:2000122: negative regulation of stomatal complex development1.91E-03
57GO:0031122: cytoplasmic microtubule organization1.91E-03
58GO:0019722: calcium-mediated signaling2.02E-03
59GO:0016117: carotenoid biosynthetic process2.19E-03
60GO:0042335: cuticle development2.36E-03
61GO:0010087: phloem or xylem histogenesis2.36E-03
62GO:0046785: microtubule polymerization2.43E-03
63GO:0048359: mucilage metabolic process involved in seed coat development2.43E-03
64GO:0016120: carotene biosynthetic process2.43E-03
65GO:0045038: protein import into chloroplast thylakoid membrane2.43E-03
66GO:0043097: pyrimidine nucleoside salvage2.43E-03
67GO:0016123: xanthophyll biosynthetic process2.43E-03
68GO:0044209: AMP salvage2.43E-03
69GO:0010375: stomatal complex patterning2.43E-03
70GO:0019252: starch biosynthetic process2.93E-03
71GO:0010190: cytochrome b6f complex assembly3.00E-03
72GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.00E-03
73GO:0006596: polyamine biosynthetic process3.00E-03
74GO:0006206: pyrimidine nucleobase metabolic process3.00E-03
75GO:0032973: amino acid export3.00E-03
76GO:0016458: gene silencing3.00E-03
77GO:0006014: D-ribose metabolic process3.00E-03
78GO:0048759: xylem vessel member cell differentiation3.00E-03
79GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.00E-03
80GO:0010358: leaf shaping3.00E-03
81GO:0016132: brassinosteroid biosynthetic process3.14E-03
82GO:0005975: carbohydrate metabolic process3.17E-03
83GO:0010090: trichome morphogenesis3.57E-03
84GO:0010067: procambium histogenesis3.62E-03
85GO:0006694: steroid biosynthetic process3.62E-03
86GO:1901259: chloroplast rRNA processing3.62E-03
87GO:0010019: chloroplast-nucleus signaling pathway3.62E-03
88GO:0009955: adaxial/abaxial pattern specification3.62E-03
89GO:0006955: immune response4.26E-03
90GO:0009395: phospholipid catabolic process4.26E-03
91GO:0043090: amino acid import4.26E-03
92GO:0051693: actin filament capping4.26E-03
93GO:0010027: thylakoid membrane organization4.53E-03
94GO:0009819: drought recovery4.95E-03
95GO:2000070: regulation of response to water deprivation4.95E-03
96GO:0006875: cellular metal ion homeostasis4.95E-03
97GO:0045010: actin nucleation4.95E-03
98GO:0007155: cell adhesion4.95E-03
99GO:0006869: lipid transport5.08E-03
100GO:0007186: G-protein coupled receptor signaling pathway5.67E-03
101GO:0017004: cytochrome complex assembly5.67E-03
102GO:0009808: lignin metabolic process5.67E-03
103GO:0006002: fructose 6-phosphate metabolic process5.67E-03
104GO:0015996: chlorophyll catabolic process5.67E-03
105GO:0000160: phosphorelay signal transduction system6.21E-03
106GO:0080144: amino acid homeostasis6.43E-03
107GO:0000902: cell morphogenesis6.43E-03
108GO:0090305: nucleic acid phosphodiester bond hydrolysis6.43E-03
109GO:0042761: very long-chain fatty acid biosynthetic process7.22E-03
110GO:0016051: carbohydrate biosynthetic process7.49E-03
111GO:0009870: defense response signaling pathway, resistance gene-dependent8.04E-03
112GO:0019538: protein metabolic process8.04E-03
113GO:0030422: production of siRNA involved in RNA interference8.04E-03
114GO:0043069: negative regulation of programmed cell death8.04E-03
115GO:0006415: translational termination8.90E-03
116GO:0018119: peptidyl-cysteine S-nitrosylation8.90E-03
117GO:0010015: root morphogenesis8.90E-03
118GO:0019684: photosynthesis, light reaction8.90E-03
119GO:0009089: lysine biosynthetic process via diaminopimelate8.90E-03
120GO:0006810: transport8.96E-03
121GO:0010102: lateral root morphogenesis1.07E-02
122GO:0009725: response to hormone1.07E-02
123GO:0006094: gluconeogenesis1.07E-02
124GO:0005986: sucrose biosynthetic process1.07E-02
125GO:0009826: unidimensional cell growth1.08E-02
126GO:0009658: chloroplast organization1.13E-02
127GO:0009933: meristem structural organization1.17E-02
128GO:0007015: actin filament organization1.17E-02
129GO:0019253: reductive pentose-phosphate cycle1.17E-02
130GO:0010223: secondary shoot formation1.17E-02
131GO:0010207: photosystem II assembly1.17E-02
132GO:0009825: multidimensional cell growth1.26E-02
133GO:0009736: cytokinin-activated signaling pathway1.31E-02
134GO:0006636: unsaturated fatty acid biosynthetic process1.37E-02
135GO:0006833: water transport1.37E-02
136GO:0005992: trehalose biosynthetic process1.47E-02
137GO:0009116: nucleoside metabolic process1.47E-02
138GO:0006096: glycolytic process1.55E-02
139GO:0051302: regulation of cell division1.58E-02
140GO:0061077: chaperone-mediated protein folding1.68E-02
141GO:0006306: DNA methylation1.68E-02
142GO:0006730: one-carbon metabolic process1.80E-02
143GO:0030245: cellulose catabolic process1.80E-02
144GO:0045454: cell redox homeostasis1.87E-02
145GO:0009294: DNA mediated transformation1.91E-02
146GO:0040007: growth1.91E-02
147GO:0001944: vasculature development1.91E-02
148GO:0010089: xylem development2.03E-02
149GO:0055085: transmembrane transport2.07E-02
150GO:0034220: ion transmembrane transport2.27E-02
151GO:0009409: response to cold2.27E-02
152GO:0045489: pectin biosynthetic process2.39E-02
153GO:0010305: leaf vascular tissue pattern formation2.39E-02
154GO:0010182: sugar mediated signaling pathway2.39E-02
155GO:0006342: chromatin silencing2.39E-02
156GO:0009741: response to brassinosteroid2.39E-02
157GO:0010268: brassinosteroid homeostasis2.39E-02
158GO:0007018: microtubule-based movement2.52E-02
159GO:0000302: response to reactive oxygen species2.78E-02
160GO:0016032: viral process2.91E-02
161GO:0032502: developmental process2.91E-02
162GO:0007264: small GTPase mediated signal transduction2.91E-02
163GO:0010583: response to cyclopentenone2.91E-02
164GO:1901657: glycosyl compound metabolic process3.05E-02
165GO:0016125: sterol metabolic process3.19E-02
166GO:0051607: defense response to virus3.47E-02
167GO:0016126: sterol biosynthetic process3.62E-02
168GO:0009816: defense response to bacterium, incompatible interaction3.76E-02
169GO:0009607: response to biotic stimulus3.76E-02
170GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.76E-02
171GO:0015995: chlorophyll biosynthetic process4.06E-02
172GO:0010411: xyloglucan metabolic process4.06E-02
173GO:0009817: defense response to fungus, incompatible interaction4.37E-02
174GO:0030244: cellulose biosynthetic process4.37E-02
175GO:0009832: plant-type cell wall biogenesis4.52E-02
176GO:0009834: plant-type secondary cell wall biogenesis4.68E-02
177GO:0009407: toxin catabolic process4.68E-02
178GO:0009631: cold acclimation4.84E-02
179GO:0007568: aging4.84E-02
180GO:0010119: regulation of stomatal movement4.84E-02
RankGO TermAdjusted P value
1GO:0102344: 3-hydroxy-behenoyl-CoA dehydratase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0015136: sialic acid transmembrane transporter activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0010487: thermospermine synthase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0102345: 3-hydroxy-lignoceroyl-CoA dehydratase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0050614: delta24-sterol reductase activity0.00E+00
14GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
15GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
16GO:0051920: peroxiredoxin activity2.71E-06
17GO:0016209: antioxidant activity6.61E-06
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor5.21E-05
19GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.80E-04
20GO:0016768: spermine synthase activity2.80E-04
21GO:0015088: copper uptake transmembrane transporter activity2.80E-04
22GO:0051996: squalene synthase activity2.80E-04
23GO:0004001: adenosine kinase activity2.80E-04
24GO:0010012: steroid 22-alpha hydroxylase activity2.80E-04
25GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.80E-04
26GO:0004560: alpha-L-fucosidase activity2.80E-04
27GO:0004013: adenosylhomocysteinase activity2.80E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.80E-04
29GO:0042834: peptidoglycan binding2.80E-04
30GO:0008568: microtubule-severing ATPase activity2.80E-04
31GO:0080132: fatty acid alpha-hydroxylase activity2.80E-04
32GO:0003924: GTPase activity3.29E-04
33GO:0016759: cellulose synthase activity4.38E-04
34GO:0005200: structural constituent of cytoskeleton4.74E-04
35GO:0008805: carbon-monoxide oxygenase activity6.14E-04
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.14E-04
37GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.14E-04
38GO:0008967: phosphoglycolate phosphatase activity6.14E-04
39GO:0042389: omega-3 fatty acid desaturase activity6.14E-04
40GO:0003938: IMP dehydrogenase activity6.14E-04
41GO:0004047: aminomethyltransferase activity6.14E-04
42GO:0004766: spermidine synthase activity6.14E-04
43GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.14E-04
44GO:0005525: GTP binding8.09E-04
45GO:0004565: beta-galactosidase activity8.37E-04
46GO:0004148: dihydrolipoyl dehydrogenase activity9.96E-04
47GO:0004075: biotin carboxylase activity9.96E-04
48GO:0030267: glyoxylate reductase (NADP) activity9.96E-04
49GO:0005457: GDP-fucose transmembrane transporter activity9.96E-04
50GO:0016149: translation release factor activity, codon specific1.42E-03
51GO:0005460: UDP-glucose transmembrane transporter activity1.42E-03
52GO:0035197: siRNA binding1.42E-03
53GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.42E-03
54GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.42E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity1.42E-03
56GO:0052793: pectin acetylesterase activity1.91E-03
57GO:0004845: uracil phosphoribosyltransferase activity1.91E-03
58GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed1.91E-03
59GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.91E-03
60GO:1990137: plant seed peroxidase activity1.91E-03
61GO:0008514: organic anion transmembrane transporter activity2.02E-03
62GO:0016773: phosphotransferase activity, alcohol group as acceptor2.43E-03
63GO:0004040: amidase activity2.43E-03
64GO:0003989: acetyl-CoA carboxylase activity2.43E-03
65GO:0005459: UDP-galactose transmembrane transporter activity2.43E-03
66GO:0004130: cytochrome-c peroxidase activity3.00E-03
67GO:0016688: L-ascorbate peroxidase activity3.00E-03
68GO:0042578: phosphoric ester hydrolase activity3.00E-03
69GO:0048038: quinone binding3.14E-03
70GO:0000156: phosphorelay response regulator activity3.57E-03
71GO:0004747: ribokinase activity3.62E-03
72GO:0051753: mannan synthase activity3.62E-03
73GO:0004849: uridine kinase activity3.62E-03
74GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.62E-03
75GO:0052689: carboxylic ester hydrolase activity3.91E-03
76GO:0005338: nucleotide-sugar transmembrane transporter activity4.26E-03
77GO:0019843: rRNA binding4.31E-03
78GO:0008865: fructokinase activity4.95E-03
79GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.67E-03
80GO:0003747: translation release factor activity6.43E-03
81GO:0004222: metalloendopeptidase activity6.51E-03
82GO:0005381: iron ion transmembrane transporter activity7.22E-03
83GO:0004805: trehalose-phosphatase activity8.04E-03
84GO:0004521: endoribonuclease activity9.79E-03
85GO:0008289: lipid binding1.00E-02
86GO:0008081: phosphoric diester hydrolase activity1.07E-02
87GO:0004089: carbonate dehydratase activity1.07E-02
88GO:0031072: heat shock protein binding1.07E-02
89GO:0004601: peroxidase activity1.13E-02
90GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.13E-02
91GO:0016788: hydrolase activity, acting on ester bonds1.16E-02
92GO:0004725: protein tyrosine phosphatase activity1.37E-02
93GO:0005528: FK506 binding1.47E-02
94GO:0004176: ATP-dependent peptidase activity1.68E-02
95GO:0033612: receptor serine/threonine kinase binding1.68E-02
96GO:0022857: transmembrane transporter activity1.76E-02
97GO:0016760: cellulose synthase (UDP-forming) activity1.91E-02
98GO:0030570: pectate lyase activity1.91E-02
99GO:0008810: cellulase activity1.91E-02
100GO:0004871: signal transducer activity1.99E-02
101GO:0005102: receptor binding2.15E-02
102GO:0016491: oxidoreductase activity2.17E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.19E-02
104GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.40E-02
105GO:0019901: protein kinase binding2.65E-02
106GO:0004872: receptor activity2.65E-02
107GO:0005516: calmodulin binding2.66E-02
108GO:0016762: xyloglucan:xyloglucosyl transferase activity2.78E-02
109GO:0004518: nuclease activity2.91E-02
110GO:0051015: actin filament binding3.05E-02
111GO:0016722: oxidoreductase activity, oxidizing metal ions3.33E-02
112GO:0008237: metallopeptidase activity3.33E-02
113GO:0008483: transaminase activity3.33E-02
114GO:0008017: microtubule binding3.37E-02
115GO:0015250: water channel activity3.62E-02
116GO:0030247: polysaccharide binding4.06E-02
117GO:0016798: hydrolase activity, acting on glycosyl bonds4.06E-02
118GO:0102483: scopolin beta-glucosidase activity4.06E-02
119GO:0042802: identical protein binding4.09E-02
120GO:0016757: transferase activity, transferring glycosyl groups4.36E-02
121GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.84E-02
122GO:0030145: manganese ion binding4.84E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.96E-14
2GO:0009941: chloroplast envelope1.68E-12
3GO:0048046: apoplast6.94E-10
4GO:0009570: chloroplast stroma1.94E-09
5GO:0009535: chloroplast thylakoid membrane4.74E-07
6GO:0031225: anchored component of membrane6.87E-07
7GO:0009534: chloroplast thylakoid1.82E-06
8GO:0046658: anchored component of plasma membrane5.51E-06
9GO:0009505: plant-type cell wall6.79E-06
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.33E-05
11GO:0005886: plasma membrane3.91E-05
12GO:0009579: thylakoid8.51E-05
13GO:0000139: Golgi membrane2.24E-04
14GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.80E-04
15GO:0009923: fatty acid elongase complex2.80E-04
16GO:0045298: tubulin complex4.05E-04
17GO:0042170: plastid membrane6.14E-04
18GO:0008290: F-actin capping protein complex6.14E-04
19GO:0005874: microtubule6.90E-04
20GO:0005802: trans-Golgi network7.63E-04
21GO:0009528: plastid inner membrane9.96E-04
22GO:0005768: endosome1.01E-03
23GO:0005960: glycine cleavage complex1.42E-03
24GO:0042651: thylakoid membrane1.42E-03
25GO:0005719: nuclear euchromatin1.42E-03
26GO:0015630: microtubule cytoskeleton1.42E-03
27GO:0005618: cell wall1.44E-03
28GO:0005576: extracellular region1.52E-03
29GO:0009532: plastid stroma1.56E-03
30GO:0009506: plasmodesma1.64E-03
31GO:0016021: integral component of membrane1.89E-03
32GO:0031897: Tic complex1.91E-03
33GO:0009527: plastid outer membrane1.91E-03
34GO:0009536: plastid1.99E-03
35GO:0005794: Golgi apparatus2.13E-03
36GO:0031209: SCAR complex3.00E-03
37GO:0009706: chloroplast inner membrane3.24E-03
38GO:0010287: plastoglobule4.02E-03
39GO:0010319: stromule4.03E-03
40GO:0009533: chloroplast stromal thylakoid4.26E-03
41GO:0009543: chloroplast thylakoid lumen4.31E-03
42GO:0005811: lipid particle5.67E-03
43GO:0005763: mitochondrial small ribosomal subunit6.43E-03
44GO:0015934: large ribosomal subunit6.83E-03
45GO:0015030: Cajal body7.22E-03
46GO:0055028: cortical microtubule8.04E-03
47GO:0016020: membrane8.07E-03
48GO:0005884: actin filament8.90E-03
49GO:0030095: chloroplast photosystem II1.17E-02
50GO:0030176: integral component of endoplasmic reticulum membrane1.26E-02
51GO:0009654: photosystem II oxygen evolving complex1.58E-02
52GO:0005871: kinesin complex2.15E-02
53GO:0019898: extrinsic component of membrane2.65E-02
54GO:0005778: peroxisomal membrane3.33E-02
55GO:0005615: extracellular space3.61E-02
56GO:0030529: intracellular ribonucleoprotein complex3.62E-02
57GO:0009707: chloroplast outer membrane4.37E-02
58GO:0005840: ribosome4.38E-02
59GO:0005773: vacuole4.39E-02
60GO:0022626: cytosolic ribosome4.69E-02
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Gene type



Gene DE type