Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G35260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
2GO:0080056: petal vascular tissue pattern formation0.00E+00
3GO:0080053: response to phenylalanine0.00E+00
4GO:0043201: response to leucine0.00E+00
5GO:0080057: sepal vascular tissue pattern formation0.00E+00
6GO:0080052: response to histidine0.00E+00
7GO:0043687: post-translational protein modification0.00E+00
8GO:0000478: endonucleolytic cleavage involved in rRNA processing0.00E+00
9GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
10GO:0051553: flavone biosynthetic process0.00E+00
11GO:0006182: cGMP biosynthetic process0.00E+00
12GO:0042742: defense response to bacterium4.51E-07
13GO:0018279: protein N-linked glycosylation via asparagine1.78E-06
14GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine6.42E-06
15GO:0006952: defense response1.23E-05
16GO:0042351: 'de novo' GDP-L-fucose biosynthetic process2.24E-05
17GO:0010188: response to microbial phytotoxin8.71E-05
18GO:0009620: response to fungus1.49E-04
19GO:0000162: tryptophan biosynthetic process1.54E-04
20GO:0006468: protein phosphorylation2.19E-04
21GO:0006099: tricarboxylic acid cycle2.81E-04
22GO:0010365: positive regulation of ethylene biosynthetic process3.78E-04
23GO:0042350: GDP-L-fucose biosynthetic process3.78E-04
24GO:0034970: histone H3-R2 methylation3.78E-04
25GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.78E-04
26GO:0034972: histone H3-R26 methylation3.78E-04
27GO:1901183: positive regulation of camalexin biosynthetic process3.78E-04
28GO:0002143: tRNA wobble position uridine thiolation3.78E-04
29GO:0042759: long-chain fatty acid biosynthetic process3.78E-04
30GO:0019673: GDP-mannose metabolic process3.78E-04
31GO:0034971: histone H3-R17 methylation3.78E-04
32GO:0010266: response to vitamin B13.78E-04
33GO:0046167: glycerol-3-phosphate biosynthetic process3.78E-04
34GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine3.78E-04
35GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.26E-04
36GO:0010150: leaf senescence5.10E-04
37GO:0010120: camalexin biosynthetic process5.22E-04
38GO:0009617: response to bacterium6.99E-04
39GO:0009751: response to salicylic acid8.00E-04
40GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine8.22E-04
41GO:0006641: triglyceride metabolic process8.22E-04
42GO:0051645: Golgi localization8.22E-04
43GO:1902884: positive regulation of response to oxidative stress8.22E-04
44GO:0006212: uracil catabolic process8.22E-04
45GO:0043066: negative regulation of apoptotic process8.22E-04
46GO:0019483: beta-alanine biosynthetic process8.22E-04
47GO:0042939: tripeptide transport8.22E-04
48GO:0060151: peroxisome localization8.22E-04
49GO:0031349: positive regulation of defense response8.22E-04
50GO:0080183: response to photooxidative stress8.22E-04
51GO:0009682: induced systemic resistance9.90E-04
52GO:0052544: defense response by callose deposition in cell wall9.90E-04
53GO:0009627: systemic acquired resistance1.10E-03
54GO:0015783: GDP-fucose transport1.33E-03
55GO:0006517: protein deglycosylation1.33E-03
56GO:0051211: anisotropic cell growth1.33E-03
57GO:1900055: regulation of leaf senescence1.33E-03
58GO:0019563: glycerol catabolic process1.33E-03
59GO:0009062: fatty acid catabolic process1.33E-03
60GO:0090436: leaf pavement cell development1.33E-03
61GO:0051646: mitochondrion localization1.33E-03
62GO:0006107: oxaloacetate metabolic process1.92E-03
63GO:0002239: response to oomycetes1.92E-03
64GO:0072334: UDP-galactose transmembrane transport1.92E-03
65GO:0009226: nucleotide-sugar biosynthetic process1.92E-03
66GO:0006072: glycerol-3-phosphate metabolic process1.92E-03
67GO:0009399: nitrogen fixation1.92E-03
68GO:0006516: glycoprotein catabolic process1.92E-03
69GO:0006882: cellular zinc ion homeostasis1.92E-03
70GO:0046513: ceramide biosynthetic process1.92E-03
71GO:0006515: misfolded or incompletely synthesized protein catabolic process1.92E-03
72GO:0000187: activation of MAPK activity1.92E-03
73GO:0080147: root hair cell development1.99E-03
74GO:0016998: cell wall macromolecule catabolic process2.42E-03
75GO:0006508: proteolysis2.51E-03
76GO:0048830: adventitious root development2.58E-03
77GO:0006734: NADH metabolic process2.58E-03
78GO:0042938: dipeptide transport2.58E-03
79GO:0006542: glutamine biosynthetic process2.58E-03
80GO:0071456: cellular response to hypoxia2.65E-03
81GO:0010227: floral organ abscission2.89E-03
82GO:0007166: cell surface receptor signaling pathway3.02E-03
83GO:0009306: protein secretion3.14E-03
84GO:0009697: salicylic acid biosynthetic process3.30E-03
85GO:0030041: actin filament polymerization3.30E-03
86GO:0006461: protein complex assembly3.30E-03
87GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.08E-03
88GO:0047484: regulation of response to osmotic stress4.08E-03
89GO:0042176: regulation of protein catabolic process4.08E-03
90GO:0002238: response to molecule of fungal origin4.08E-03
91GO:0006014: D-ribose metabolic process4.08E-03
92GO:0009759: indole glucosinolate biosynthetic process4.08E-03
93GO:0006561: proline biosynthetic process4.08E-03
94GO:0009826: unidimensional cell growth4.53E-03
95GO:0009851: auxin biosynthetic process4.57E-03
96GO:2000037: regulation of stomatal complex patterning4.92E-03
97GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response4.92E-03
98GO:0042372: phylloquinone biosynthetic process4.92E-03
99GO:0000911: cytokinesis by cell plate formation4.92E-03
100GO:0009612: response to mechanical stimulus4.92E-03
101GO:0030163: protein catabolic process5.58E-03
102GO:1900056: negative regulation of leaf senescence5.81E-03
103GO:0000338: protein deneddylation5.81E-03
104GO:0010044: response to aluminum ion5.81E-03
105GO:0050832: defense response to fungus5.84E-03
106GO:0010252: auxin homeostasis5.94E-03
107GO:0006904: vesicle docking involved in exocytosis6.31E-03
108GO:0007165: signal transduction6.35E-03
109GO:0009787: regulation of abscisic acid-activated signaling pathway6.75E-03
110GO:0006102: isocitrate metabolic process6.75E-03
111GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.01E-03
112GO:0006972: hyperosmotic response7.75E-03
113GO:0043562: cellular response to nitrogen levels7.75E-03
114GO:0009808: lignin metabolic process7.75E-03
115GO:0015780: nucleotide-sugar transport8.79E-03
116GO:0007338: single fertilization8.79E-03
117GO:0009821: alkaloid biosynthetic process8.79E-03
118GO:0009817: defense response to fungus, incompatible interaction9.27E-03
119GO:0009813: flavonoid biosynthetic process9.74E-03
120GO:0008202: steroid metabolic process9.89E-03
121GO:0071577: zinc II ion transmembrane transport9.89E-03
122GO:0006032: chitin catabolic process1.10E-02
123GO:0009688: abscisic acid biosynthetic process1.10E-02
124GO:0043069: negative regulation of programmed cell death1.10E-02
125GO:0009641: shade avoidance1.10E-02
126GO:0045087: innate immune response1.18E-02
127GO:0009684: indoleacetic acid biosynthetic process1.22E-02
128GO:0019684: photosynthesis, light reaction1.22E-02
129GO:0030148: sphingolipid biosynthetic process1.22E-02
130GO:0000266: mitochondrial fission1.34E-02
131GO:0012501: programmed cell death1.34E-02
132GO:0071365: cellular response to auxin stimulus1.34E-02
133GO:0006887: exocytosis1.40E-02
134GO:0009718: anthocyanin-containing compound biosynthetic process1.47E-02
135GO:0030048: actin filament-based movement1.47E-02
136GO:0010588: cotyledon vascular tissue pattern formation1.47E-02
137GO:0006626: protein targeting to mitochondrion1.47E-02
138GO:0006108: malate metabolic process1.47E-02
139GO:0006807: nitrogen compound metabolic process1.47E-02
140GO:2000028: regulation of photoperiodism, flowering1.47E-02
141GO:0010229: inflorescence development1.47E-02
142GO:0051707: response to other organism1.52E-02
143GO:0048467: gynoecium development1.60E-02
144GO:0002237: response to molecule of bacterial origin1.60E-02
145GO:0009636: response to toxic substance1.71E-02
146GO:0009969: xyloglucan biosynthetic process1.74E-02
147GO:0007030: Golgi organization1.74E-02
148GO:0070588: calcium ion transmembrane transport1.74E-02
149GO:0009846: pollen germination1.91E-02
150GO:0042538: hyperosmotic salinity response1.91E-02
151GO:0055114: oxidation-reduction process1.92E-02
152GO:0006487: protein N-linked glycosylation2.02E-02
153GO:0009863: salicylic acid mediated signaling pathway2.02E-02
154GO:2000377: regulation of reactive oxygen species metabolic process2.02E-02
155GO:0005992: trehalose biosynthetic process2.02E-02
156GO:0006874: cellular calcium ion homeostasis2.17E-02
157GO:0043622: cortical microtubule organization2.17E-02
158GO:0009814: defense response, incompatible interaction2.48E-02
159GO:0009735: response to cytokinin2.48E-02
160GO:0030433: ubiquitin-dependent ERAD pathway2.48E-02
161GO:0031348: negative regulation of defense response2.48E-02
162GO:0006012: galactose metabolic process2.64E-02
163GO:0010584: pollen exine formation2.80E-02
164GO:0016192: vesicle-mediated transport2.80E-02
165GO:0046777: protein autophosphorylation2.86E-02
166GO:0044550: secondary metabolite biosynthetic process2.92E-02
167GO:0010118: stomatal movement3.13E-02
168GO:0000413: protein peptidyl-prolyl isomerization3.13E-02
169GO:0006885: regulation of pH3.30E-02
170GO:0071472: cellular response to salt stress3.30E-02
171GO:0010305: leaf vascular tissue pattern formation3.30E-02
172GO:0042752: regulation of circadian rhythm3.48E-02
173GO:0009646: response to absence of light3.48E-02
174GO:0048544: recognition of pollen3.48E-02
175GO:0061025: membrane fusion3.48E-02
176GO:0010183: pollen tube guidance3.66E-02
177GO:0019252: starch biosynthetic process3.66E-02
178GO:0002229: defense response to oomycetes3.83E-02
179GO:0010193: response to ozone3.83E-02
180GO:0006635: fatty acid beta-oxidation3.83E-02
181GO:0009630: gravitropism4.02E-02
182GO:0010583: response to cyclopentenone4.02E-02
183GO:0016032: viral process4.02E-02
184GO:0032259: methylation4.04E-02
185GO:0010090: trichome morphogenesis4.21E-02
186GO:0009567: double fertilization forming a zygote and endosperm4.40E-02
187GO:0006633: fatty acid biosynthetic process4.59E-02
188GO:0009753: response to jasmonic acid4.64E-02
189GO:0040008: regulation of growth4.80E-02
190GO:0016126: sterol biosynthetic process4.98E-02
191GO:0009615: response to virus4.98E-02
RankGO TermAdjusted P value
1GO:0033759: flavone synthase activity0.00E+00
2GO:0061604: molybdopterin-synthase sulfurtransferase activity0.00E+00
3GO:0003837: beta-ureidopropionase activity0.00E+00
4GO:0004164: diphthine synthase activity0.00E+00
5GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
6GO:0070577: lysine-acetylated histone binding0.00E+00
7GO:0000247: C-8 sterol isomerase activity0.00E+00
8GO:0047750: cholestenol delta-isomerase activity0.00E+00
9GO:0004370: glycerol kinase activity0.00E+00
10GO:0061605: molybdopterin-synthase adenylyltransferase activity0.00E+00
11GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity0.00E+00
12GO:0016504: peptidase activator activity0.00E+00
13GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity8.96E-09
14GO:0004576: oligosaccharyl transferase activity7.91E-07
15GO:0004674: protein serine/threonine kinase activity1.33E-06
16GO:0004383: guanylate cyclase activity2.24E-05
17GO:0016301: kinase activity8.24E-05
18GO:0010279: indole-3-acetic acid amido synthetase activity8.71E-05
19GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.24E-04
20GO:0004656: procollagen-proline 4-dioxygenase activity2.63E-04
21GO:0005524: ATP binding2.71E-04
22GO:0050577: GDP-L-fucose synthase activity3.78E-04
23GO:0008809: carnitine racemase activity3.78E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity3.78E-04
25GO:0033984: indole-3-glycerol-phosphate lyase activity3.78E-04
26GO:0008446: GDP-mannose 4,6-dehydratase activity3.78E-04
27GO:0008909: isochorismate synthase activity3.78E-04
28GO:0019707: protein-cysteine S-acyltransferase activity3.78E-04
29GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity3.78E-04
30GO:0045140: inositol phosphoceramide synthase activity8.22E-04
31GO:0032934: sterol binding8.22E-04
32GO:0019200: carbohydrate kinase activity8.22E-04
33GO:0042937: tripeptide transporter activity8.22E-04
34GO:0030742: GTP-dependent protein binding8.22E-04
35GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity8.22E-04
36GO:0050736: O-malonyltransferase activity8.22E-04
37GO:0035241: protein-arginine omega-N monomethyltransferase activity8.22E-04
38GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity8.22E-04
39GO:0004566: beta-glucuronidase activity8.22E-04
40GO:0050291: sphingosine N-acyltransferase activity8.22E-04
41GO:0005506: iron ion binding1.07E-03
42GO:0008469: histone-arginine N-methyltransferase activity1.33E-03
43GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.33E-03
44GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.33E-03
45GO:0016805: dipeptidase activity1.33E-03
46GO:0005457: GDP-fucose transmembrane transporter activity1.33E-03
47GO:0004190: aspartic-type endopeptidase activity1.61E-03
48GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.81E-03
49GO:0001653: peptide receptor activity1.92E-03
50GO:0004792: thiosulfate sulfurtransferase activity1.92E-03
51GO:0004449: isocitrate dehydrogenase (NAD+) activity1.92E-03
52GO:0004165: dodecenoyl-CoA delta-isomerase activity1.92E-03
53GO:0031418: L-ascorbic acid binding1.99E-03
54GO:0004834: tryptophan synthase activity2.58E-03
55GO:0042936: dipeptide transporter activity2.58E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.58E-03
57GO:0070628: proteasome binding2.58E-03
58GO:0004031: aldehyde oxidase activity2.58E-03
59GO:0050302: indole-3-acetaldehyde oxidase activity2.58E-03
60GO:0045431: flavonol synthase activity3.30E-03
61GO:0015301: anion:anion antiporter activity3.30E-03
62GO:0005459: UDP-galactose transmembrane transporter activity3.30E-03
63GO:0008641: small protein activating enzyme activity3.30E-03
64GO:0005452: inorganic anion exchanger activity3.30E-03
65GO:0017137: Rab GTPase binding3.30E-03
66GO:0004040: amidase activity3.30E-03
67GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.30E-03
68GO:0004356: glutamate-ammonia ligase activity3.30E-03
69GO:0009055: electron carrier activity3.62E-03
70GO:0016615: malate dehydrogenase activity4.08E-03
71GO:0004866: endopeptidase inhibitor activity4.08E-03
72GO:0016853: isomerase activity4.26E-03
73GO:0008168: methyltransferase activity4.53E-03
74GO:0102391: decanoate--CoA ligase activity4.92E-03
75GO:0004012: phospholipid-translocating ATPase activity4.92E-03
76GO:0004747: ribokinase activity4.92E-03
77GO:0030060: L-malate dehydrogenase activity4.92E-03
78GO:0008235: metalloexopeptidase activity5.81E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity5.81E-03
80GO:0050660: flavin adenine dinucleotide binding5.99E-03
81GO:0004034: aldose 1-epimerase activity6.75E-03
82GO:0052747: sinapyl alcohol dehydrogenase activity6.75E-03
83GO:0008865: fructokinase activity6.75E-03
84GO:0004708: MAP kinase kinase activity6.75E-03
85GO:0008142: oxysterol binding7.75E-03
86GO:0030247: polysaccharide binding8.36E-03
87GO:0008757: S-adenosylmethionine-dependent methyltransferase activity8.80E-03
88GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen9.84E-03
89GO:0004743: pyruvate kinase activity9.89E-03
90GO:0045309: protein phosphorylated amino acid binding9.89E-03
91GO:0030955: potassium ion binding9.89E-03
92GO:0016844: strictosidine synthase activity9.89E-03
93GO:0030145: manganese ion binding1.07E-02
94GO:0030234: enzyme regulator activity1.10E-02
95GO:0004568: chitinase activity1.10E-02
96GO:0004713: protein tyrosine kinase activity1.10E-02
97GO:0019904: protein domain specific binding1.22E-02
98GO:0004177: aminopeptidase activity1.22E-02
99GO:0045551: cinnamyl-alcohol dehydrogenase activity1.34E-02
100GO:0005388: calcium-transporting ATPase activity1.47E-02
101GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.47E-02
102GO:0003774: motor activity1.60E-02
103GO:0019825: oxygen binding1.61E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.65E-02
105GO:0004970: ionotropic glutamate receptor activity1.74E-02
106GO:0005217: intracellular ligand-gated ion channel activity1.74E-02
107GO:0005385: zinc ion transmembrane transporter activity2.02E-02
108GO:0003954: NADH dehydrogenase activity2.02E-02
109GO:0043531: ADP binding2.25E-02
110GO:0019706: protein-cysteine S-palmitoyltransferase activity2.32E-02
111GO:0045735: nutrient reservoir activity2.43E-02
112GO:0003779: actin binding2.84E-02
113GO:0015035: protein disulfide oxidoreductase activity3.01E-02
114GO:0016746: transferase activity, transferring acyl groups3.01E-02
115GO:0005451: monovalent cation:proton antiporter activity3.13E-02
116GO:0030276: clathrin binding3.30E-02
117GO:0008536: Ran GTPase binding3.30E-02
118GO:0001085: RNA polymerase II transcription factor binding3.30E-02
119GO:0046873: metal ion transmembrane transporter activity3.30E-02
120GO:0015299: solute:proton antiporter activity3.48E-02
121GO:0050662: coenzyme binding3.48E-02
122GO:0010181: FMN binding3.48E-02
123GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.76E-02
124GO:0015385: sodium:proton antiporter activity4.21E-02
125GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.59E-02
126GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.69E-02
RankGO TermAdjusted P value
1GO:0045252: oxoglutarate dehydrogenase complex0.00E+00
2GO:0005886: plasma membrane2.18E-10
3GO:0005783: endoplasmic reticulum6.10E-09
4GO:0008250: oligosaccharyltransferase complex8.96E-09
5GO:0016021: integral component of membrane4.43E-08
6GO:0005829: cytosol1.84E-05
7GO:0005794: Golgi apparatus4.48E-05
8GO:0005789: endoplasmic reticulum membrane1.00E-04
9GO:0005774: vacuolar membrane1.86E-04
10GO:0030173: integral component of Golgi membrane2.63E-04
11GO:0005911: cell-cell junction3.78E-04
12GO:0000138: Golgi trans cisterna3.78E-04
13GO:0031304: intrinsic component of mitochondrial inner membrane8.22E-04
14GO:0005765: lysosomal membrane9.90E-04
15GO:0016020: membrane1.65E-03
16GO:0070062: extracellular exosome1.92E-03
17GO:0030660: Golgi-associated vesicle membrane2.58E-03
18GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.58E-03
19GO:0009506: plasmodesma3.74E-03
20GO:0010005: cortical microtubule, transverse to long axis4.92E-03
21GO:0000145: exocyst5.23E-03
22GO:0009505: plant-type cell wall5.59E-03
23GO:0030131: clathrin adaptor complex6.75E-03
24GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane6.75E-03
25GO:0005576: extracellular region7.38E-03
26GO:0008180: COP9 signalosome8.79E-03
27GO:0031901: early endosome membrane8.79E-03
28GO:0005876: spindle microtubule9.89E-03
29GO:0000325: plant-type vacuole1.07E-02
30GO:0055028: cortical microtubule1.10E-02
31GO:0030125: clathrin vesicle coat1.10E-02
32GO:0016459: myosin complex1.10E-02
33GO:0008541: proteasome regulatory particle, lid subcomplex1.22E-02
34GO:0031902: late endosome membrane1.40E-02
35GO:0009574: preprophase band1.47E-02
36GO:0030176: integral component of endoplasmic reticulum membrane1.74E-02
37GO:0000139: Golgi membrane1.83E-02
38GO:0005769: early endosome1.88E-02
39GO:0005802: trans-Golgi network1.97E-02
40GO:0005839: proteasome core complex2.32E-02
41GO:0005905: clathrin-coated pit2.32E-02
42GO:0005737: cytoplasm2.40E-02
43GO:0005773: vacuole2.43E-02
44GO:0019898: extrinsic component of membrane3.66E-02
45GO:0009504: cell plate3.66E-02
46GO:0009543: chloroplast thylakoid lumen3.66E-02
47GO:0009524: phragmoplast3.86E-02
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Gene type



Gene DE type