co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042425: choline biosynthetic process	0.00E+00
2	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
3	GO:0033231: carbohydrate export	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0010205: photoinhibition	2.45E-07
8	GO:0015979: photosynthesis	2.29E-06
9	GO:0035304: regulation of protein dephosphorylation	3.35E-06
10	GO:0090391: granum assembly	1.21E-05
11	GO:0080170: hydrogen peroxide transmembrane transport	2.72E-05
12	GO:0009773: photosynthetic electron transport in photosystem I	2.77E-05
13	GO:0010207: photosystem II assembly	5.23E-05
14	GO:0042549: photosystem II stabilization	1.13E-04
15	GO:0006655: phosphatidylglycerol biosynthetic process	1.13E-04
16	GO:0034220: ion transmembrane transport	2.15E-04
17	GO:0009642: response to light intensity	2.58E-04
18	GO:0010480: microsporocyte differentiation	2.70E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	2.70E-04
20	GO:0065002: intracellular protein transmembrane transport	2.70E-04
21	GO:0006106: fumarate metabolic process	2.70E-04
22	GO:1902458: positive regulation of stomatal opening	2.70E-04
23	GO:0010028: xanthophyll cycle	2.70E-04
24	GO:0034337: RNA folding	2.70E-04
25	GO:0000305: response to oxygen radical	2.70E-04
26	GO:1902334: fructose export from vacuole to cytoplasm	2.70E-04
27	GO:0015755: fructose transport	2.70E-04
28	GO:0019646: aerobic electron transport chain	2.70E-04
29	GO:0000476: maturation of 4.5S rRNA	2.70E-04
30	GO:0000967: rRNA 5'-end processing	2.70E-04
31	GO:0043953: protein transport by the Tat complex	2.70E-04
32	GO:0046467: membrane lipid biosynthetic process	2.70E-04
33	GO:1904966: positive regulation of vitamin E biosynthetic process	2.70E-04
34	GO:0010027: thylakoid membrane organization	5.15E-04
35	GO:0080009: mRNA methylation	5.94E-04
36	GO:0016122: xanthophyll metabolic process	5.94E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.94E-04
38	GO:0010289: homogalacturonan biosynthetic process	5.94E-04
39	GO:0034470: ncRNA processing	5.94E-04
40	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.94E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.94E-04
42	GO:0080005: photosystem stoichiometry adjustment	5.94E-04
43	GO:1900871: chloroplast mRNA modification	5.94E-04
44	GO:0018026: peptidyl-lysine monomethylation	5.94E-04
45	GO:0019684: photosynthesis, light reaction	6.14E-04
46	GO:0016024: CDP-diacylglycerol biosynthetic process	7.02E-04
47	GO:0016050: vesicle organization	9.62E-04
48	GO:1902448: positive regulation of shade avoidance	9.62E-04
49	GO:0006518: peptide metabolic process	9.62E-04
50	GO:0034599: cellular response to oxidative stress	1.02E-03
51	GO:0006833: water transport	1.11E-03
52	GO:0006636: unsaturated fatty acid biosynthetic process	1.11E-03
53	GO:0051639: actin filament network formation	1.38E-03
54	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.38E-03
55	GO:0055114: oxidation-reduction process	1.39E-03
56	GO:0055085: transmembrane transport	1.51E-03
57	GO:0071369: cellular response to ethylene stimulus	1.76E-03
58	GO:0010021: amylopectin biosynthetic process	1.84E-03
59	GO:0010109: regulation of photosynthesis	1.84E-03
60	GO:0051764: actin crosslink formation	1.84E-03
61	GO:0009765: photosynthesis, light harvesting	1.84E-03
62	GO:0006109: regulation of carbohydrate metabolic process	1.84E-03
63	GO:0045727: positive regulation of translation	1.84E-03
64	GO:0015994: chlorophyll metabolic process	1.84E-03
65	GO:0030104: water homeostasis	1.84E-03
66	GO:0006749: glutathione metabolic process	1.84E-03
67	GO:0009306: protein secretion	1.92E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	2.35E-03
69	GO:0006656: phosphatidylcholine biosynthetic process	2.35E-03
70	GO:0019252: starch biosynthetic process	2.79E-03
71	GO:0005975: carbohydrate metabolic process	2.83E-03
72	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.90E-03
73	GO:0016554: cytidine to uridine editing	2.90E-03
74	GO:0009735: response to cytokinin	3.09E-03
75	GO:0042372: phylloquinone biosynthetic process	3.49E-03
76	GO:1901259: chloroplast rRNA processing	3.49E-03
77	GO:0009942: longitudinal axis specification	3.49E-03
78	GO:0015693: magnesium ion transport	4.12E-03
79	GO:0048528: post-embryonic root development	4.12E-03
80	GO:0048437: floral organ development	4.12E-03
81	GO:0010196: nonphotochemical quenching	4.12E-03
82	GO:1900057: positive regulation of leaf senescence	4.12E-03
83	GO:0010444: guard mother cell differentiation	4.12E-03
84	GO:2000070: regulation of response to water deprivation	4.77E-03
85	GO:0005978: glycogen biosynthetic process	4.77E-03
86	GO:0030091: protein repair	4.77E-03
87	GO:0015995: chlorophyll biosynthetic process	5.06E-03
88	GO:0032544: plastid translation	5.47E-03
89	GO:0007389: pattern specification process	5.47E-03
90	GO:0071482: cellular response to light stimulus	5.47E-03
91	GO:0007623: circadian rhythm	6.08E-03
92	GO:0000373: Group II intron splicing	6.20E-03
93	GO:0010206: photosystem II repair	6.20E-03
94	GO:0009631: cold acclimation	6.49E-03
95	GO:0009638: phototropism	6.96E-03
96	GO:1900865: chloroplast RNA modification	6.96E-03
97	GO:0055062: phosphate ion homeostasis	7.75E-03
98	GO:0006995: cellular response to nitrogen starvation	7.75E-03
99	GO:0006810: transport	8.10E-03
100	GO:0009750: response to fructose	8.58E-03
101	GO:0048229: gametophyte development	8.58E-03
102	GO:0043085: positive regulation of catalytic activity	8.58E-03
103	GO:1903507: negative regulation of nucleic acid-templated transcription	8.58E-03
104	GO:0005983: starch catabolic process	9.44E-03
105	GO:0006108: malate metabolic process	1.03E-02
106	GO:0009718: anthocyanin-containing compound biosynthetic process	1.03E-02
107	GO:0010075: regulation of meristem growth	1.03E-02
108	GO:0006094: gluconeogenesis	1.03E-02
109	GO:0009785: blue light signaling pathway	1.03E-02
110	GO:0010628: positive regulation of gene expression	1.03E-02
111	GO:0009934: regulation of meristem structural organization	1.12E-02
112	GO:0010030: positive regulation of seed germination	1.22E-02
113	GO:0071732: cellular response to nitric oxide	1.22E-02
114	GO:0006364: rRNA processing	1.24E-02
115	GO:0009833: plant-type primary cell wall biogenesis	1.32E-02
116	GO:0010025: wax biosynthetic process	1.32E-02
117	GO:0051017: actin filament bundle assembly	1.42E-02
118	GO:0008299: isoprenoid biosynthetic process	1.52E-02
119	GO:0051260: protein homooligomerization	1.62E-02
120	GO:0035428: hexose transmembrane transport	1.73E-02
121	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.73E-02
122	GO:0045454: cell redox homeostasis	1.75E-02
123	GO:0009686: gibberellin biosynthetic process	1.84E-02
124	GO:0042127: regulation of cell proliferation	1.95E-02
125	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.07E-02
126	GO:0070417: cellular response to cold	2.07E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	2.19E-02
128	GO:0048653: anther development	2.19E-02
129	GO:0042631: cellular response to water deprivation	2.19E-02
130	GO:0042335: cuticle development	2.19E-02
131	GO:0006662: glycerol ether metabolic process	2.31E-02
132	GO:0046323: glucose import	2.31E-02
133	GO:0010268: brassinosteroid homeostasis	2.31E-02
134	GO:0009646: response to absence of light	2.43E-02
135	GO:0042744: hydrogen peroxide catabolic process	2.53E-02
136	GO:0010183: pollen tube guidance	2.55E-02
137	GO:0008152: metabolic process	2.58E-02
138	GO:0016132: brassinosteroid biosynthetic process	2.68E-02
139	GO:0000302: response to reactive oxygen species	2.68E-02
140	GO:0006633: fatty acid biosynthetic process	2.79E-02
141	GO:0010583: response to cyclopentenone	2.81E-02
142	GO:1901657: glycosyl compound metabolic process	2.94E-02
143	GO:0071281: cellular response to iron ion	2.94E-02
144	GO:0009567: double fertilization forming a zygote and endosperm	3.07E-02
145	GO:0016125: sterol metabolic process	3.07E-02
146	GO:0010252: auxin homeostasis	3.07E-02
147	GO:0071805: potassium ion transmembrane transport	3.21E-02
148	GO:0042128: nitrate assimilation	3.77E-02
149	GO:0006979: response to oxidative stress	3.85E-02
150	GO:0018298: protein-chromophore linkage	4.21E-02
151	GO:0030244: cellulose biosynthetic process	4.21E-02
152	GO:0000160: phosphorelay signal transduction system	4.36E-02
153	GO:0007568: aging	4.66E-02
154	GO:0016051: carbohydrate biosynthetic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0015284: fructose uniporter activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0010242: oxygen evolving activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.35E-06
9	GO:0008266: poly(U) RNA binding	5.23E-05
10	GO:0016491: oxidoreductase activity	1.76E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.70E-04
12	GO:0004333: fumarate hydratase activity	2.70E-04
13	GO:0050139: nicotinate-N-glucosyltransferase activity	2.70E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.70E-04
15	GO:0051777: ent-kaurenoate oxidase activity	2.70E-04
16	GO:0004856: xylulokinase activity	2.70E-04
17	GO:0045485: omega-6 fatty acid desaturase activity	2.70E-04
18	GO:0015250: water channel activity	5.15E-04
19	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.94E-04
20	GO:0004362: glutathione-disulfide reductase activity	5.94E-04
21	GO:0016868: intramolecular transferase activity, phosphotransferases	5.94E-04
22	GO:0033201: alpha-1,4-glucan synthase activity	5.94E-04
23	GO:0004312: fatty acid synthase activity	5.94E-04
24	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.94E-04
25	GO:0005353: fructose transmembrane transporter activity	5.94E-04
26	GO:0004565: beta-galactosidase activity	7.96E-04
27	GO:0004751: ribose-5-phosphate isomerase activity	9.62E-04
28	GO:0070402: NADPH binding	9.62E-04
29	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	9.62E-04
30	GO:0004373: glycogen (starch) synthase activity	9.62E-04
31	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.62E-04
32	GO:0005528: FK506 binding	1.23E-03
33	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.38E-03
34	GO:0019201: nucleotide kinase activity	1.38E-03
35	GO:0016851: magnesium chelatase activity	1.38E-03
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.61E-03
37	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.65E-03
38	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.84E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	1.84E-03
40	GO:0004045: aminoacyl-tRNA hydrolase activity	1.84E-03
41	GO:0009011: starch synthase activity	1.84E-03
42	GO:0043495: protein anchor	1.84E-03
43	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.84E-03
44	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.35E-03
45	GO:0004332: fructose-bisphosphate aldolase activity	2.90E-03
46	GO:0004130: cytochrome-c peroxidase activity	2.90E-03
47	GO:0035673: oligopeptide transmembrane transporter activity	2.90E-03
48	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.90E-03
49	GO:0042578: phosphoric ester hydrolase activity	2.90E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.49E-03
51	GO:0004017: adenylate kinase activity	3.49E-03
52	GO:0019843: rRNA binding	4.04E-03
53	GO:0019899: enzyme binding	4.12E-03
54	GO:0016168: chlorophyll binding	4.55E-03
55	GO:0016787: hydrolase activity	5.97E-03
56	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.20E-03
57	GO:0071949: FAD binding	6.20E-03
58	GO:0030145: manganese ion binding	6.49E-03
59	GO:0009672: auxin:proton symporter activity	6.96E-03
60	GO:0008047: enzyme activator activity	7.75E-03
61	GO:0042802: identical protein binding	8.25E-03
62	GO:0047372: acylglycerol lipase activity	8.58E-03
63	GO:0015198: oligopeptide transporter activity	9.44E-03
64	GO:0015095: magnesium ion transmembrane transporter activity	1.03E-02
65	GO:0031072: heat shock protein binding	1.03E-02
66	GO:0009982: pseudouridine synthase activity	1.03E-02
67	GO:0010329: auxin efflux transmembrane transporter activity	1.03E-02
68	GO:0051119: sugar transmembrane transporter activity	1.22E-02
69	GO:0005515: protein binding	1.37E-02
70	GO:0003954: NADH dehydrogenase activity	1.42E-02
71	GO:0004857: enzyme inhibitor activity	1.42E-02
72	GO:0003714: transcription corepressor activity	1.42E-02
73	GO:0043424: protein histidine kinase binding	1.52E-02
74	GO:0015079: potassium ion transmembrane transporter activity	1.52E-02
75	GO:0004176: ATP-dependent peptidase activity	1.62E-02
76	GO:0033612: receptor serine/threonine kinase binding	1.62E-02
77	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.73E-02
78	GO:0003723: RNA binding	1.81E-02
79	GO:0016760: cellulose synthase (UDP-forming) activity	1.84E-02
80	GO:0022891: substrate-specific transmembrane transporter activity	1.84E-02
81	GO:0003756: protein disulfide isomerase activity	1.95E-02
82	GO:0047134: protein-disulfide reductase activity	2.07E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	2.43E-02
84	GO:0016853: isomerase activity	2.43E-02
85	GO:0005355: glucose transmembrane transporter activity	2.43E-02
86	GO:0010181: FMN binding	2.43E-02
87	GO:0050662: coenzyme binding	2.43E-02
88	GO:0019901: protein kinase binding	2.55E-02
89	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.94E-02
90	GO:0051015: actin filament binding	2.94E-02
91	GO:0000156: phosphorelay response regulator activity	2.94E-02
92	GO:0016759: cellulose synthase activity	3.07E-02
93	GO:0102483: scopolin beta-glucosidase activity	3.91E-02
94	GO:0005215: transporter activity	4.39E-02
95	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.51E-02
96	GO:0004222: metalloendopeptidase activity	4.51E-02
97	GO:0004601: peroxidase activity	4.72E-02
98	GO:0016788: hydrolase activity, acting on ester bonds	4.80E-02
99	GO:0003746: translation elongation factor activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	3.01E-49
3	GO:0009534: chloroplast thylakoid	2.18E-29
4	GO:0009535: chloroplast thylakoid membrane	2.05E-25
5	GO:0009570: chloroplast stroma	5.00E-22
6	GO:0009941: chloroplast envelope	1.13E-17
7	GO:0009579: thylakoid	3.75E-13
8	GO:0009543: chloroplast thylakoid lumen	4.88E-11
9	GO:0031977: thylakoid lumen	5.44E-10
10	GO:0010287: plastoglobule	9.98E-10
11	GO:0033281: TAT protein transport complex	2.27E-08
12	GO:0030095: chloroplast photosystem II	1.32E-06
13	GO:0009654: photosystem II oxygen evolving complex	1.02E-04
14	GO:0009533: chloroplast stromal thylakoid	2.04E-04
15	GO:0045239: tricarboxylic acid cycle enzyme complex	2.70E-04
16	GO:0031361: integral component of thylakoid membrane	2.70E-04
17	GO:0043674: columella	2.70E-04
18	GO:0009515: granal stacked thylakoid	2.70E-04
19	GO:0019898: extrinsic component of membrane	2.90E-04
20	GO:0043036: starch grain	5.94E-04
21	GO:0031304: intrinsic component of mitochondrial inner membrane	5.94E-04
22	GO:0030093: chloroplast photosystem I	5.94E-04
23	GO:0009508: plastid chromosome	7.96E-04
24	GO:0010007: magnesium chelatase complex	9.62E-04
25	GO:0032432: actin filament bundle	1.38E-03
26	GO:0055035: plastid thylakoid membrane	2.35E-03
27	GO:0009522: photosystem I	2.60E-03
28	GO:0009523: photosystem II	2.79E-03
29	GO:0031969: chloroplast membrane	3.10E-03
30	GO:0009295: nucleoid	3.83E-03
31	GO:0042807: central vacuole	4.12E-03
32	GO:0030529: intracellular ribonucleoprotein complex	4.30E-03
33	GO:0009501: amyloplast	4.77E-03
34	GO:0009538: photosystem I reaction center	4.77E-03
35	GO:0016021: integral component of membrane	5.18E-03
36	GO:0008180: COP9 signalosome	6.20E-03
37	GO:0055028: cortical microtubule	7.75E-03
38	GO:0005884: actin filament	8.58E-03
39	GO:0005887: integral component of plasma membrane	8.93E-03
40	GO:0032040: small-subunit processome	9.44E-03
41	GO:0016602: CCAAT-binding factor complex	1.03E-02
42	GO:0016020: membrane	1.21E-02
43	GO:0042651: thylakoid membrane	1.52E-02
44	GO:0009532: plastid stroma	1.62E-02
45	GO:0009706: chloroplast inner membrane	1.77E-02
46	GO:0005623: cell	2.28E-02
47	GO:0009705: plant-type vacuole membrane	3.06E-02
48	GO:0005773: vacuole	3.96E-02
49	GO:0019005: SCF ubiquitin ligase complex	4.21E-02