co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:1901698: response to nitrogen compound	0.00E+00
8	GO:0015979: photosynthesis	1.38E-08
9	GO:0015995: chlorophyll biosynthetic process	1.08E-07
10	GO:0042254: ribosome biogenesis	7.23E-07
11	GO:0006412: translation	1.93E-06
12	GO:0009735: response to cytokinin	3.39E-05
13	GO:0010027: thylakoid membrane organization	4.51E-05
14	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.58E-04
15	GO:1901259: chloroplast rRNA processing	1.60E-04
16	GO:0009772: photosynthetic electron transport in photosystem II	2.10E-04
17	GO:0042335: cuticle development	2.23E-04
18	GO:0042759: long-chain fatty acid biosynthetic process	2.75E-04
19	GO:0042371: vitamin K biosynthetic process	2.75E-04
20	GO:0034337: RNA folding	2.75E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	2.75E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.75E-04
23	GO:0032544: plastid translation	3.27E-04
24	GO:0010206: photosystem II repair	3.94E-04
25	GO:0009828: plant-type cell wall loosening	4.23E-04
26	GO:0010541: acropetal auxin transport	6.04E-04
27	GO:0043255: regulation of carbohydrate biosynthetic process	6.04E-04
28	GO:0009773: photosynthetic electron transport in photosystem I	6.30E-04
29	GO:0016024: CDP-diacylglycerol biosynthetic process	7.20E-04
30	GO:0006518: peptide metabolic process	9.79E-04
31	GO:0045493: xylan catabolic process	9.79E-04
32	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	9.79E-04
33	GO:0010160: formation of animal organ boundary	9.79E-04
34	GO:0090391: granum assembly	9.79E-04
35	GO:0015840: urea transport	9.79E-04
36	GO:0071705: nitrogen compound transport	9.79E-04
37	GO:0009825: multidimensional cell growth	1.02E-03
38	GO:0010167: response to nitrate	1.02E-03
39	GO:0051017: actin filament bundle assembly	1.26E-03
40	GO:1901332: negative regulation of lateral root development	1.40E-03
41	GO:0006168: adenine salvage	1.40E-03
42	GO:0006166: purine ribonucleoside salvage	1.40E-03
43	GO:0051513: regulation of monopolar cell growth	1.40E-03
44	GO:0051639: actin filament network formation	1.40E-03
45	GO:0010239: chloroplast mRNA processing	1.40E-03
46	GO:0080170: hydrogen peroxide transmembrane transport	1.40E-03
47	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.40E-03
48	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.40E-03
49	GO:0009650: UV protection	1.40E-03
50	GO:0009647: skotomorphogenesis	1.40E-03
51	GO:0010306: rhamnogalacturonan II biosynthetic process	1.40E-03
52	GO:0009664: plant-type cell wall organization	1.83E-03
53	GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway	1.87E-03
54	GO:0051764: actin crosslink formation	1.87E-03
55	GO:0071249: cellular response to nitrate	1.87E-03
56	GO:0006183: GTP biosynthetic process	1.87E-03
57	GO:0030104: water homeostasis	1.87E-03
58	GO:0009306: protein secretion	1.97E-03
59	GO:0048443: stamen development	1.97E-03
60	GO:0042631: cellular response to water deprivation	2.30E-03
61	GO:0010236: plastoquinone biosynthetic process	2.39E-03
62	GO:0016123: xanthophyll biosynthetic process	2.39E-03
63	GO:0044209: AMP salvage	2.39E-03
64	GO:0010337: regulation of salicylic acid metabolic process	2.95E-03
65	GO:0006751: glutathione catabolic process	2.95E-03
66	GO:0006655: phosphatidylglycerol biosynthetic process	2.95E-03
67	GO:0007035: vacuolar acidification	2.95E-03
68	GO:0060918: auxin transport	2.95E-03
69	GO:0035435: phosphate ion transmembrane transport	2.95E-03
70	GO:0000302: response to reactive oxygen species	3.06E-03
71	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.55E-03
72	GO:0017148: negative regulation of translation	3.55E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	3.55E-03
74	GO:0042372: phylloquinone biosynthetic process	3.55E-03
75	GO:0071555: cell wall organization	4.02E-03
76	GO:1900057: positive regulation of leaf senescence	4.19E-03
77	GO:0010196: nonphotochemical quenching	4.19E-03
78	GO:0009690: cytokinin metabolic process	4.86E-03
79	GO:0006605: protein targeting	4.86E-03
80	GO:0048564: photosystem I assembly	4.86E-03
81	GO:0008610: lipid biosynthetic process	4.86E-03
82	GO:0006353: DNA-templated transcription, termination	4.86E-03
83	GO:0009627: systemic acquired resistance	4.93E-03
84	GO:0006526: arginine biosynthetic process	5.57E-03
85	GO:0016042: lipid catabolic process	5.59E-03
86	GO:0045490: pectin catabolic process	6.29E-03
87	GO:0048589: developmental growth	6.31E-03
88	GO:0009245: lipid A biosynthetic process	6.31E-03
89	GO:0010205: photoinhibition	7.09E-03
90	GO:0034599: cellular response to oxidative stress	7.63E-03
91	GO:0006535: cysteine biosynthetic process from serine	7.90E-03
92	GO:0006032: chitin catabolic process	7.90E-03
93	GO:0006949: syncytium formation	7.90E-03
94	GO:0010215: cellulose microfibril organization	7.90E-03
95	GO:0030001: metal ion transport	8.33E-03
96	GO:1903507: negative regulation of nucleic acid-templated transcription	8.74E-03
97	GO:0018119: peptidyl-cysteine S-nitrosylation	8.74E-03
98	GO:0010015: root morphogenesis	8.74E-03
99	GO:0009640: photomorphogenesis	9.42E-03
100	GO:0008361: regulation of cell size	9.61E-03
101	GO:0015706: nitrate transport	9.61E-03
102	GO:0010152: pollen maturation	9.61E-03
103	GO:0009826: unidimensional cell growth	1.04E-02
104	GO:0006006: glucose metabolic process	1.05E-02
105	GO:0009718: anthocyanin-containing compound biosynthetic process	1.05E-02
106	GO:0009658: chloroplast organization	1.10E-02
107	GO:0010540: basipetal auxin transport	1.14E-02
108	GO:0010143: cutin biosynthetic process	1.14E-02
109	GO:0010207: photosystem II assembly	1.14E-02
110	GO:0019253: reductive pentose-phosphate cycle	1.14E-02
111	GO:0010030: positive regulation of seed germination	1.24E-02
112	GO:0010053: root epidermal cell differentiation	1.24E-02
113	GO:0006636: unsaturated fatty acid biosynthetic process	1.34E-02
114	GO:0006833: water transport	1.34E-02
115	GO:0010025: wax biosynthetic process	1.34E-02
116	GO:0019344: cysteine biosynthetic process	1.44E-02
117	GO:0000027: ribosomal large subunit assembly	1.44E-02
118	GO:0009733: response to auxin	1.58E-02
119	GO:0016998: cell wall macromolecule catabolic process	1.65E-02
120	GO:0015992: proton transport	1.65E-02
121	GO:0048511: rhythmic process	1.65E-02
122	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.76E-02
123	GO:0030245: cellulose catabolic process	1.76E-02
124	GO:0009411: response to UV	1.88E-02
125	GO:0006284: base-excision repair	1.99E-02
126	GO:0006869: lipid transport	2.03E-02
127	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.11E-02
128	GO:0080022: primary root development	2.23E-02
129	GO:0034220: ion transmembrane transport	2.23E-02
130	GO:0000413: protein peptidyl-prolyl isomerization	2.23E-02
131	GO:0048868: pollen tube development	2.35E-02
132	GO:0009958: positive gravitropism	2.35E-02
133	GO:0006520: cellular amino acid metabolic process	2.35E-02
134	GO:0015986: ATP synthesis coupled proton transport	2.47E-02
135	GO:0042752: regulation of circadian rhythm	2.47E-02
136	GO:0042744: hydrogen peroxide catabolic process	2.59E-02
137	GO:0009790: embryo development	2.66E-02
138	GO:0071554: cell wall organization or biogenesis	2.73E-02
139	GO:0006633: fatty acid biosynthetic process	2.86E-02
140	GO:0030163: protein catabolic process	2.99E-02
141	GO:0009567: double fertilization forming a zygote and endosperm	3.13E-02
142	GO:0009639: response to red or far red light	3.13E-02
143	GO:0051607: defense response to virus	3.41E-02
144	GO:0009739: response to gibberellin	3.51E-02
145	GO:0016126: sterol biosynthetic process	3.55E-02
146	GO:0009734: auxin-activated signaling pathway	3.61E-02
147	GO:0010411: xyloglucan metabolic process	3.99E-02
148	GO:0030244: cellulose biosynthetic process	4.29E-02
149	GO:0009817: defense response to fungus, incompatible interaction	4.29E-02
150	GO:0010311: lateral root formation	4.44E-02
151	GO:0010218: response to far red light	4.59E-02
152	GO:0007568: aging	4.75E-02
153	GO:0048527: lateral root development	4.75E-02
154	GO:0009631: cold acclimation	4.75E-02
155	GO:0009416: response to light stimulus	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0019843: rRNA binding	1.91E-12
7	GO:0016851: magnesium chelatase activity	1.16E-07
8	GO:0003735: structural constituent of ribosome	2.01E-07
9	GO:0005528: FK506 binding	3.00E-06
10	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.24E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.12E-05
12	GO:0043023: ribosomal large subunit binding	2.80E-05
13	GO:0004130: cytochrome-c peroxidase activity	1.17E-04
14	GO:0052689: carboxylic ester hydrolase activity	1.63E-04
15	GO:0015200: methylammonium transmembrane transporter activity	2.75E-04
16	GO:0004163: diphosphomevalonate decarboxylase activity	2.75E-04
17	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.75E-04
18	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.75E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.75E-04
20	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.75E-04
21	GO:0045485: omega-6 fatty acid desaturase activity	2.75E-04
22	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.75E-04
23	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-04
24	GO:0003839: gamma-glutamylcyclotransferase activity	6.04E-04
25	GO:0003938: IMP dehydrogenase activity	6.04E-04
26	GO:0016630: protochlorophyllide reductase activity	6.04E-04
27	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.04E-04
28	GO:0008097: 5S rRNA binding	1.40E-03
29	GO:0003999: adenine phosphoribosyltransferase activity	1.40E-03
30	GO:0030570: pectate lyase activity	1.81E-03
31	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.87E-03
32	GO:0046556: alpha-L-arabinofuranosidase activity	1.87E-03
33	GO:0015204: urea transmembrane transporter activity	1.87E-03
34	GO:0004659: prenyltransferase activity	1.87E-03
35	GO:0010011: auxin binding	1.87E-03
36	GO:0052793: pectin acetylesterase activity	1.87E-03
37	GO:0009044: xylan 1,4-beta-xylosidase activity	1.87E-03
38	GO:0008725: DNA-3-methyladenine glycosylase activity	2.39E-03
39	GO:0004040: amidase activity	2.39E-03
40	GO:0016688: L-ascorbate peroxidase activity	2.95E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.95E-03
42	GO:0008519: ammonium transmembrane transporter activity	2.95E-03
43	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.95E-03
44	GO:0031177: phosphopantetheine binding	2.95E-03
45	GO:0051015: actin filament binding	3.48E-03
46	GO:0000035: acyl binding	3.55E-03
47	GO:0004124: cysteine synthase activity	3.55E-03
48	GO:0015631: tubulin binding	3.55E-03
49	GO:0015250: water channel activity	4.42E-03
50	GO:0016829: lyase activity	4.61E-03
51	GO:0004252: serine-type endopeptidase activity	4.76E-03
52	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.86E-03
53	GO:0008236: serine-type peptidase activity	5.47E-03
54	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.76E-03
55	GO:0004568: chitinase activity	7.90E-03
56	GO:0015020: glucuronosyltransferase activity	7.90E-03
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	8.53E-03
58	GO:0046961: proton-transporting ATPase activity, rotational mechanism	8.74E-03
59	GO:0008794: arsenate reductase (glutaredoxin) activity	8.74E-03
60	GO:0008081: phosphoric diester hydrolase activity	1.05E-02
61	GO:0031072: heat shock protein binding	1.05E-02
62	GO:0009982: pseudouridine synthase activity	1.05E-02
63	GO:0015114: phosphate ion transmembrane transporter activity	1.05E-02
64	GO:0004565: beta-galactosidase activity	1.05E-02
65	GO:0010329: auxin efflux transmembrane transporter activity	1.05E-02
66	GO:0051287: NAD binding	1.14E-02
67	GO:0003714: transcription corepressor activity	1.44E-02
68	GO:0004707: MAP kinase activity	1.65E-02
69	GO:0004650: polygalacturonase activity	1.66E-02
70	GO:0016746: transferase activity, transferring acyl groups	1.87E-02
71	GO:0008810: cellulase activity	1.88E-02
72	GO:0003756: protein disulfide isomerase activity	1.99E-02
73	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.35E-02
74	GO:0008080: N-acetyltransferase activity	2.35E-02
75	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.93E-02
76	GO:0016791: phosphatase activity	3.13E-02
77	GO:0016413: O-acetyltransferase activity	3.41E-02
78	GO:0008289: lipid binding	3.56E-02
79	GO:0016168: chlorophyll binding	3.69E-02
80	GO:0008375: acetylglucosaminyltransferase activity	3.84E-02
81	GO:0042802: identical protein binding	3.99E-02
82	GO:0030247: polysaccharide binding	3.99E-02
83	GO:0016887: ATPase activity	4.06E-02
84	GO:0004222: metalloendopeptidase activity	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009930: longitudinal side of cell surface	0.00E+00
3	GO:0009507: chloroplast	1.58E-23
4	GO:0009570: chloroplast stroma	7.64E-22
5	GO:0009941: chloroplast envelope	1.45E-18
6	GO:0009535: chloroplast thylakoid membrane	5.56E-17
7	GO:0009579: thylakoid	8.77E-17
8	GO:0009534: chloroplast thylakoid	9.61E-17
9	GO:0009543: chloroplast thylakoid lumen	5.93E-14
10	GO:0031977: thylakoid lumen	1.58E-11
11	GO:0010007: magnesium chelatase complex	2.38E-08
12	GO:0005840: ribosome	3.79E-08
13	GO:0005618: cell wall	9.94E-06
14	GO:0009505: plant-type cell wall	3.54E-05
15	GO:0030095: chloroplast photosystem II	5.44E-05
16	GO:0009654: photosystem II oxygen evolving complex	1.06E-04
17	GO:0016020: membrane	1.11E-04
18	GO:0042807: central vacuole	2.10E-04
19	GO:0009515: granal stacked thylakoid	2.75E-04
20	GO:0043674: columella	2.75E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.75E-04
22	GO:0019898: extrinsic component of membrane	3.00E-04
23	GO:0030093: chloroplast photosystem I	6.04E-04
24	GO:0005576: extracellular region	7.36E-04
25	GO:0016328: lateral plasma membrane	9.79E-04
26	GO:0009897: external side of plasma membrane	9.79E-04
27	GO:0009509: chromoplast	9.79E-04
28	GO:0032432: actin filament bundle	1.40E-03
29	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.39E-03
30	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.95E-03
31	GO:0009533: chloroplast stromal thylakoid	4.19E-03
32	GO:0009538: photosystem I reaction center	4.86E-03
33	GO:0000326: protein storage vacuole	5.57E-03
34	GO:0008180: COP9 signalosome	6.31E-03
35	GO:0048046: apoplast	7.60E-03
36	GO:0031225: anchored component of membrane	8.25E-03
37	GO:0005884: actin filament	8.74E-03
38	GO:0046658: anchored component of plasma membrane	8.98E-03
39	GO:0000311: plastid large ribosomal subunit	9.61E-03
40	GO:0032040: small-subunit processome	9.61E-03
41	GO:0009508: plastid chromosome	1.05E-02
42	GO:0000312: plastid small ribosomal subunit	1.14E-02
43	GO:0031969: chloroplast membrane	1.44E-02
44	GO:0015935: small ribosomal subunit	1.65E-02
45	GO:0009706: chloroplast inner membrane	1.82E-02
46	GO:0015629: actin cytoskeleton	1.88E-02
47	GO:0005886: plasma membrane	2.31E-02
48	GO:0009522: photosystem I	2.47E-02
49	GO:0009523: photosystem II	2.60E-02
50	GO:0009705: plant-type vacuole membrane	3.14E-02
51	GO:0010319: stromule	3.27E-02
52	GO:0009295: nucleoid	3.27E-02
53	GO:0019005: SCF ubiquitin ligase complex	4.29E-02