Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34220

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900000: regulation of anthocyanin catabolic process0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0051513: regulation of monopolar cell growth5.58E-06
8GO:0010450: inflorescence meristem growth1.10E-04
9GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process1.10E-04
10GO:0000476: maturation of 4.5S rRNA1.10E-04
11GO:0000967: rRNA 5'-end processing1.10E-04
12GO:0043266: regulation of potassium ion transport1.10E-04
13GO:0010480: microsporocyte differentiation1.10E-04
14GO:2000021: regulation of ion homeostasis1.10E-04
15GO:0015995: chlorophyll biosynthetic process1.18E-04
16GO:0009734: auxin-activated signaling pathway2.50E-04
17GO:0034470: ncRNA processing2.57E-04
18GO:0010541: acropetal auxin transport2.57E-04
19GO:0031648: protein destabilization2.57E-04
20GO:0009640: photomorphogenesis2.70E-04
21GO:0009733: response to auxin3.79E-04
22GO:0045165: cell fate commitment4.25E-04
23GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement4.25E-04
24GO:0010160: formation of animal organ boundary4.25E-04
25GO:0045493: xylan catabolic process4.25E-04
26GO:2000022: regulation of jasmonic acid mediated signaling pathway4.85E-04
27GO:0048443: stamen development5.72E-04
28GO:0080170: hydrogen peroxide transmembrane transport6.10E-04
29GO:0043481: anthocyanin accumulation in tissues in response to UV light6.10E-04
30GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity6.10E-04
31GO:0009647: skotomorphogenesis6.10E-04
32GO:0010306: rhamnogalacturonan II biosynthetic process6.10E-04
33GO:0034220: ion transmembrane transport6.67E-04
34GO:0030104: water homeostasis8.10E-04
35GO:1902183: regulation of shoot apical meristem development1.02E-03
36GO:0016123: xanthophyll biosynthetic process1.02E-03
37GO:0010158: abaxial cell fate specification1.02E-03
38GO:0040008: regulation of growth1.16E-03
39GO:0006751: glutathione catabolic process1.25E-03
40GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.25E-03
41GO:0007035: vacuolar acidification1.25E-03
42GO:0009228: thiamine biosynthetic process1.25E-03
43GO:0009913: epidermal cell differentiation1.25E-03
44GO:0060918: auxin transport1.25E-03
45GO:0009772: photosynthetic electron transport in photosystem II1.75E-03
46GO:0048437: floral organ development1.75E-03
47GO:1900057: positive regulation of leaf senescence1.75E-03
48GO:0009690: cytokinin metabolic process2.03E-03
49GO:0010093: specification of floral organ identity2.32E-03
50GO:0009657: plastid organization2.32E-03
51GO:0009051: pentose-phosphate shunt, oxidative branch2.62E-03
52GO:0009245: lipid A biosynthetic process2.62E-03
53GO:0051865: protein autoubiquitination2.62E-03
54GO:0010206: photosystem II repair2.62E-03
55GO:2000024: regulation of leaf development2.62E-03
56GO:0048589: developmental growth2.62E-03
57GO:0010205: photoinhibition2.93E-03
58GO:0009664: plant-type cell wall organization3.27E-03
59GO:0015979: photosynthesis3.30E-03
60GO:1903507: negative regulation of nucleic acid-templated transcription3.59E-03
61GO:0018119: peptidyl-cysteine S-nitrosylation3.59E-03
62GO:0048229: gametophyte development3.59E-03
63GO:0008361: regulation of cell size3.93E-03
64GO:0010152: pollen maturation3.93E-03
65GO:0010075: regulation of meristem growth4.30E-03
66GO:0010588: cotyledon vascular tissue pattern formation4.30E-03
67GO:0030048: actin filament-based movement4.30E-03
68GO:0016042: lipid catabolic process4.41E-03
69GO:0010540: basipetal auxin transport4.66E-03
70GO:0009934: regulation of meristem structural organization4.66E-03
71GO:0009933: meristem structural organization4.66E-03
72GO:0010207: photosystem II assembly4.66E-03
73GO:0006833: water transport5.44E-03
74GO:0009833: plant-type primary cell wall biogenesis5.44E-03
75GO:0009944: polarity specification of adaxial/abaxial axis5.84E-03
76GO:0007017: microtubule-based process6.25E-03
77GO:0048511: rhythmic process6.67E-03
78GO:0016114: terpenoid biosynthetic process6.67E-03
79GO:0015992: proton transport6.67E-03
80GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.55E-03
81GO:0010082: regulation of root meristem growth7.55E-03
82GO:0007623: circadian rhythm8.60E-03
83GO:0048653: anther development8.93E-03
84GO:0042631: cellular response to water deprivation8.93E-03
85GO:0042335: cuticle development8.93E-03
86GO:0080022: primary root development8.93E-03
87GO:0010087: phloem or xylem histogenesis8.93E-03
88GO:0009741: response to brassinosteroid9.41E-03
89GO:0010154: fruit development9.41E-03
90GO:0010305: leaf vascular tissue pattern formation9.41E-03
91GO:0009958: positive gravitropism9.41E-03
92GO:0048868: pollen tube development9.41E-03
93GO:0009416: response to light stimulus9.47E-03
94GO:0042752: regulation of circadian rhythm9.91E-03
95GO:0048825: cotyledon development1.04E-02
96GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.09E-02
97GO:0010193: response to ozone1.09E-02
98GO:0000302: response to reactive oxygen species1.09E-02
99GO:0009639: response to red or far red light1.25E-02
100GO:0009828: plant-type cell wall loosening1.25E-02
101GO:0009826: unidimensional cell growth1.28E-02
102GO:0009627: systemic acquired resistance1.53E-02
103GO:0007275: multicellular organism development1.58E-02
104GO:0010411: xyloglucan metabolic process1.59E-02
105GO:0030244: cellulose biosynthetic process1.71E-02
106GO:0000160: phosphorelay signal transduction system1.77E-02
107GO:0010218: response to far red light1.83E-02
108GO:0048527: lateral root development1.89E-02
109GO:0009637: response to blue light2.02E-02
110GO:0016051: carbohydrate biosynthetic process2.02E-02
111GO:0034599: cellular response to oxidative stress2.09E-02
112GO:0030001: metal ion transport2.22E-02
113GO:0071555: cell wall organization2.31E-02
114GO:0010114: response to red light2.42E-02
115GO:0009926: auxin polar transport2.42E-02
116GO:0031347: regulation of defense response2.77E-02
117GO:0042538: hyperosmotic salinity response2.85E-02
118GO:0009736: cytokinin-activated signaling pathway2.99E-02
119GO:0016567: protein ubiquitination3.02E-02
120GO:0010224: response to UV-B3.07E-02
121GO:0006417: regulation of translation3.22E-02
122GO:0009909: regulation of flower development3.22E-02
123GO:0048367: shoot system development3.45E-02
124GO:0048316: seed development3.45E-02
125GO:0009740: gibberellic acid mediated signaling pathway3.69E-02
126GO:0009624: response to nematode3.85E-02
127GO:0006396: RNA processing3.93E-02
128GO:0009735: response to cytokinin3.96E-02
129GO:0009742: brassinosteroid mediated signaling pathway4.01E-02
130GO:0009611: response to wounding4.42E-02
131GO:0009845: seed germination4.77E-02
132GO:0042744: hydrogen peroxide catabolic process4.95E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0047807: cytokinin 7-beta-glucosyltransferase activity1.10E-04
6GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity1.10E-04
7GO:0080062: cytokinin 9-beta-glucosyltransferase activity1.10E-04
8GO:0005515: protein binding2.28E-04
9GO:0003839: gamma-glutamylcyclotransferase activity2.57E-04
10GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity2.57E-04
11GO:0016630: protochlorophyllide reductase activity2.57E-04
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.32E-04
13GO:0005528: FK506 binding3.65E-04
14GO:0017057: 6-phosphogluconolactonase activity6.10E-04
15GO:0010011: auxin binding8.10E-04
16GO:0009044: xylan 1,4-beta-xylosidase activity8.10E-04
17GO:0046556: alpha-L-arabinofuranosidase activity8.10E-04
18GO:0004130: cytochrome-c peroxidase activity1.25E-03
19GO:0015250: water channel activity1.25E-03
20GO:0031177: phosphopantetheine binding1.25E-03
21GO:0000035: acyl binding1.49E-03
22GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process2.03E-03
23GO:0016788: hydrolase activity, acting on ester bonds2.18E-03
24GO:0043621: protein self-association2.82E-03
25GO:0052689: carboxylic ester hydrolase activity3.17E-03
26GO:0015020: glucuronosyltransferase activity3.25E-03
27GO:0004864: protein phosphatase inhibitor activity3.25E-03
28GO:0047372: acylglycerol lipase activity3.59E-03
29GO:0046961: proton-transporting ATPase activity, rotational mechanism3.59E-03
30GO:0031072: heat shock protein binding4.30E-03
31GO:0010329: auxin efflux transmembrane transporter activity4.30E-03
32GO:0003774: motor activity4.66E-03
33GO:0003714: transcription corepressor activity5.84E-03
34GO:0033612: receptor serine/threonine kinase binding6.67E-03
35GO:0016829: lyase activity6.74E-03
36GO:0016760: cellulose synthase (UDP-forming) activity7.55E-03
37GO:0030570: pectate lyase activity7.55E-03
38GO:0003756: protein disulfide isomerase activity8.00E-03
39GO:0003727: single-stranded RNA binding8.00E-03
40GO:0001085: RNA polymerase II transcription factor binding9.41E-03
41GO:0004872: receptor activity1.04E-02
42GO:0000156: phosphorelay response regulator activity1.20E-02
43GO:0016759: cellulose synthase activity1.25E-02
44GO:0005200: structural constituent of cytoskeleton1.30E-02
45GO:0008375: acetylglucosaminyltransferase activity1.53E-02
46GO:0005096: GTPase activator activity1.77E-02
47GO:0030145: manganese ion binding1.89E-02
48GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.89E-02
49GO:0004712: protein serine/threonine/tyrosine kinase activity2.15E-02
50GO:0003924: GTPase activity2.45E-02
51GO:0016491: oxidoreductase activity3.26E-02
52GO:0008289: lipid binding3.40E-02
53GO:0080043: quercetin 3-O-glucosyltransferase activity3.61E-02
54GO:0080044: quercetin 7-O-glucosyltransferase activity3.61E-02
55GO:0004650: polygalacturonase activity3.61E-02
56GO:0051082: unfolded protein binding3.85E-02
57GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.60E-02
58GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.95E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0009534: chloroplast thylakoid1.83E-10
3GO:0009543: chloroplast thylakoid lumen5.36E-06
4GO:0009507: chloroplast8.55E-06
5GO:0009535: chloroplast thylakoid membrane1.34E-05
6GO:0031977: thylakoid lumen1.37E-05
7GO:0043674: columella1.10E-04
8GO:0030095: chloroplast photosystem II2.61E-04
9GO:0009531: secondary cell wall6.10E-04
10GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain1.02E-03
11GO:0009570: chloroplast stroma1.36E-03
12GO:0009533: chloroplast stromal thylakoid1.75E-03
13GO:0042807: central vacuole1.75E-03
14GO:0009941: chloroplast envelope2.02E-03
15GO:0009538: photosystem I reaction center2.03E-03
16GO:0045298: tubulin complex2.62E-03
17GO:0008180: COP9 signalosome2.62E-03
18GO:0016459: myosin complex3.25E-03
19GO:0005886: plasma membrane6.75E-03
20GO:0009705: plant-type vacuole membrane8.60E-03
21GO:0009523: photosystem II1.04E-02
22GO:0009579: thylakoid1.19E-02
23GO:0005667: transcription factor complex1.53E-02
24GO:0031969: chloroplast membrane1.66E-02
25GO:0019005: SCF ubiquitin ligase complex1.71E-02
26GO:0000502: proteasome complex2.99E-02
27GO:0005887: integral component of plasma membrane3.32E-02
28GO:0005774: vacuolar membrane3.64E-02
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Gene type



Gene DE type