GO Enrichment Analysis of Co-expressed Genes with
AT4G33520
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 8 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 9 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 10 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 13 | GO:0015979: photosynthesis | 6.41E-10 |
| 14 | GO:0032544: plastid translation | 6.72E-10 |
| 15 | GO:0009773: photosynthetic electron transport in photosystem I | 4.88E-07 |
| 16 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.24E-06 |
| 17 | GO:0006412: translation | 3.01E-05 |
| 18 | GO:0010027: thylakoid membrane organization | 4.08E-05 |
| 19 | GO:0009658: chloroplast organization | 6.75E-05 |
| 20 | GO:0018298: protein-chromophore linkage | 6.81E-05 |
| 21 | GO:0031365: N-terminal protein amino acid modification | 7.56E-05 |
| 22 | GO:0009735: response to cytokinin | 1.70E-04 |
| 23 | GO:0006400: tRNA modification | 1.99E-04 |
| 24 | GO:0043686: co-translational protein modification | 2.65E-04 |
| 25 | GO:1902458: positive regulation of stomatal opening | 2.65E-04 |
| 26 | GO:0034337: RNA folding | 2.65E-04 |
| 27 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.65E-04 |
| 28 | GO:0051180: vitamin transport | 2.65E-04 |
| 29 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.65E-04 |
| 30 | GO:0030974: thiamine pyrophosphate transport | 2.65E-04 |
| 31 | GO:0043489: RNA stabilization | 2.65E-04 |
| 32 | GO:0000481: maturation of 5S rRNA | 2.65E-04 |
| 33 | GO:0071482: cellular response to light stimulus | 3.10E-04 |
| 34 | GO:0042254: ribosome biogenesis | 4.49E-04 |
| 35 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.83E-04 |
| 36 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 5.83E-04 |
| 37 | GO:0015893: drug transport | 5.83E-04 |
| 38 | GO:0034755: iron ion transmembrane transport | 5.83E-04 |
| 39 | GO:1900871: chloroplast mRNA modification | 5.83E-04 |
| 40 | GO:0009662: etioplast organization | 5.83E-04 |
| 41 | GO:0009073: aromatic amino acid family biosynthetic process | 5.99E-04 |
| 42 | GO:0043085: positive regulation of catalytic activity | 5.99E-04 |
| 43 | GO:0010207: photosystem II assembly | 8.73E-04 |
| 44 | GO:0030865: cortical cytoskeleton organization | 9.47E-04 |
| 45 | GO:0000913: preprophase band assembly | 9.47E-04 |
| 46 | GO:0010581: regulation of starch biosynthetic process | 9.47E-04 |
| 47 | GO:0006954: inflammatory response | 9.47E-04 |
| 48 | GO:0006518: peptide metabolic process | 9.47E-04 |
| 49 | GO:0071492: cellular response to UV-A | 9.47E-04 |
| 50 | GO:2001141: regulation of RNA biosynthetic process | 1.35E-03 |
| 51 | GO:0010088: phloem development | 1.35E-03 |
| 52 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.35E-03 |
| 53 | GO:0010731: protein glutathionylation | 1.35E-03 |
| 54 | GO:0006424: glutamyl-tRNA aminoacylation | 1.35E-03 |
| 55 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.35E-03 |
| 56 | GO:0031408: oxylipin biosynthetic process | 1.44E-03 |
| 57 | GO:0006808: regulation of nitrogen utilization | 1.81E-03 |
| 58 | GO:0071486: cellular response to high light intensity | 1.81E-03 |
| 59 | GO:0009765: photosynthesis, light harvesting | 1.81E-03 |
| 60 | GO:0045727: positive regulation of translation | 1.81E-03 |
| 61 | GO:0006461: protein complex assembly | 2.31E-03 |
| 62 | GO:0016120: carotene biosynthetic process | 2.31E-03 |
| 63 | GO:0000304: response to singlet oxygen | 2.31E-03 |
| 64 | GO:0032543: mitochondrial translation | 2.31E-03 |
| 65 | GO:0006564: L-serine biosynthetic process | 2.31E-03 |
| 66 | GO:0010236: plastoquinone biosynthetic process | 2.31E-03 |
| 67 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.31E-03 |
| 68 | GO:0006810: transport | 2.48E-03 |
| 69 | GO:0042549: photosystem II stabilization | 2.85E-03 |
| 70 | GO:0000470: maturation of LSU-rRNA | 2.85E-03 |
| 71 | GO:0010190: cytochrome b6f complex assembly | 2.85E-03 |
| 72 | GO:0009854: oxidative photosynthetic carbon pathway | 3.43E-03 |
| 73 | GO:0010019: chloroplast-nucleus signaling pathway | 3.43E-03 |
| 74 | GO:0042372: phylloquinone biosynthetic process | 3.43E-03 |
| 75 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.43E-03 |
| 76 | GO:0030488: tRNA methylation | 3.43E-03 |
| 77 | GO:0010189: vitamin E biosynthetic process | 3.43E-03 |
| 78 | GO:0010196: nonphotochemical quenching | 4.04E-03 |
| 79 | GO:0048564: photosystem I assembly | 4.69E-03 |
| 80 | GO:0032508: DNA duplex unwinding | 4.69E-03 |
| 81 | GO:2000070: regulation of response to water deprivation | 4.69E-03 |
| 82 | GO:0015995: chlorophyll biosynthetic process | 4.93E-03 |
| 83 | GO:0015996: chlorophyll catabolic process | 5.37E-03 |
| 84 | GO:0007186: G-protein coupled receptor signaling pathway | 5.37E-03 |
| 85 | GO:0009657: plastid organization | 5.37E-03 |
| 86 | GO:0019430: removal of superoxide radicals | 5.37E-03 |
| 87 | GO:0009051: pentose-phosphate shunt, oxidative branch | 6.09E-03 |
| 88 | GO:0006098: pentose-phosphate shunt | 6.09E-03 |
| 89 | GO:0010206: photosystem II repair | 6.09E-03 |
| 90 | GO:0008152: metabolic process | 6.25E-03 |
| 91 | GO:0009631: cold acclimation | 6.32E-03 |
| 92 | GO:0010205: photoinhibition | 6.83E-03 |
| 93 | GO:0010380: regulation of chlorophyll biosynthetic process | 6.83E-03 |
| 94 | GO:0009637: response to blue light | 6.93E-03 |
| 95 | GO:0034599: cellular response to oxidative stress | 7.24E-03 |
| 96 | GO:0048829: root cap development | 7.61E-03 |
| 97 | GO:0006839: mitochondrial transport | 7.90E-03 |
| 98 | GO:0006879: cellular iron ion homeostasis | 8.42E-03 |
| 99 | GO:0006352: DNA-templated transcription, initiation | 8.42E-03 |
| 100 | GO:0010114: response to red light | 8.94E-03 |
| 101 | GO:0045037: protein import into chloroplast stroma | 9.26E-03 |
| 102 | GO:0009644: response to high light intensity | 9.68E-03 |
| 103 | GO:0006094: gluconeogenesis | 1.01E-02 |
| 104 | GO:0009636: response to toxic substance | 1.01E-02 |
| 105 | GO:0010628: positive regulation of gene expression | 1.01E-02 |
| 106 | GO:0006006: glucose metabolic process | 1.01E-02 |
| 107 | GO:0055114: oxidation-reduction process | 1.03E-02 |
| 108 | GO:0006855: drug transmembrane transport | 1.04E-02 |
| 109 | GO:0010020: chloroplast fission | 1.10E-02 |
| 110 | GO:0006364: rRNA processing | 1.21E-02 |
| 111 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.29E-02 |
| 112 | GO:0000027: ribosomal large subunit assembly | 1.39E-02 |
| 113 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.49E-02 |
| 114 | GO:0061077: chaperone-mediated protein folding | 1.59E-02 |
| 115 | GO:0003333: amino acid transmembrane transport | 1.59E-02 |
| 116 | GO:0045454: cell redox homeostasis | 1.70E-02 |
| 117 | GO:0055085: transmembrane transport | 1.84E-02 |
| 118 | GO:0010089: xylem development | 1.92E-02 |
| 119 | GO:0009561: megagametogenesis | 1.92E-02 |
| 120 | GO:0016117: carotenoid biosynthetic process | 2.03E-02 |
| 121 | GO:0000226: microtubule cytoskeleton organization | 2.15E-02 |
| 122 | GO:0042335: cuticle development | 2.15E-02 |
| 123 | GO:0010182: sugar mediated signaling pathway | 2.26E-02 |
| 124 | GO:0006662: glycerol ether metabolic process | 2.26E-02 |
| 125 | GO:0042744: hydrogen peroxide catabolic process | 2.46E-02 |
| 126 | GO:0000302: response to reactive oxygen species | 2.63E-02 |
| 127 | GO:0006413: translational initiation | 2.78E-02 |
| 128 | GO:0009451: RNA modification | 3.05E-02 |
| 129 | GO:0071805: potassium ion transmembrane transport | 3.15E-02 |
| 130 | GO:0001666: response to hypoxia | 3.42E-02 |
| 131 | GO:0016311: dephosphorylation | 3.98E-02 |
| 132 | GO:0009817: defense response to fungus, incompatible interaction | 4.13E-02 |
| 133 | GO:0009407: toxin catabolic process | 4.43E-02 |
| 134 | GO:0010218: response to far red light | 4.43E-02 |
| 135 | GO:0006865: amino acid transport | 4.73E-02 |
| 136 | GO:0009853: photorespiration | 4.88E-02 |
| 137 | GO:0045087: innate immune response | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046608: carotenoid isomerase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 4 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 6 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 7 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 8 | GO:0019843: rRNA binding | 4.33E-14 |
| 9 | GO:0005528: FK506 binding | 7.48E-12 |
| 10 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.33E-09 |
| 11 | GO:0016168: chlorophyll binding | 2.09E-06 |
| 12 | GO:0022891: substrate-specific transmembrane transporter activity | 6.20E-06 |
| 13 | GO:0003735: structural constituent of ribosome | 3.50E-05 |
| 14 | GO:0043495: protein anchor | 4.76E-05 |
| 15 | GO:0008266: poly(U) RNA binding | 5.02E-05 |
| 16 | GO:0019899: enzyme binding | 1.99E-04 |
| 17 | GO:0004033: aldo-keto reductase (NADP) activity | 2.52E-04 |
| 18 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.65E-04 |
| 19 | GO:0090422: thiamine pyrophosphate transporter activity | 2.65E-04 |
| 20 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.65E-04 |
| 21 | GO:0042586: peptide deformylase activity | 2.65E-04 |
| 22 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.65E-04 |
| 23 | GO:0005080: protein kinase C binding | 2.65E-04 |
| 24 | GO:0008047: enzyme activator activity | 5.20E-04 |
| 25 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.83E-04 |
| 26 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.83E-04 |
| 27 | GO:0031072: heat shock protein binding | 7.76E-04 |
| 28 | GO:0070402: NADPH binding | 9.47E-04 |
| 29 | GO:0017150: tRNA dihydrouridine synthase activity | 9.47E-04 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 9.47E-04 |
| 31 | GO:0015079: potassium ion transmembrane transporter activity | 1.32E-03 |
| 32 | GO:0043023: ribosomal large subunit binding | 1.35E-03 |
| 33 | GO:0016851: magnesium chelatase activity | 1.35E-03 |
| 34 | GO:0001053: plastid sigma factor activity | 1.81E-03 |
| 35 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.81E-03 |
| 36 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.81E-03 |
| 37 | GO:0016987: sigma factor activity | 1.81E-03 |
| 38 | GO:0010328: auxin influx transmembrane transporter activity | 1.81E-03 |
| 39 | GO:0004791: thioredoxin-disulfide reductase activity | 2.53E-03 |
| 40 | GO:0050662: coenzyme binding | 2.53E-03 |
| 41 | GO:0004332: fructose-bisphosphate aldolase activity | 2.85E-03 |
| 42 | GO:0004130: cytochrome-c peroxidase activity | 2.85E-03 |
| 43 | GO:0016208: AMP binding | 2.85E-03 |
| 44 | GO:0016688: L-ascorbate peroxidase activity | 2.85E-03 |
| 45 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.30E-03 |
| 46 | GO:0008235: metalloexopeptidase activity | 4.04E-03 |
| 47 | GO:0005215: transporter activity | 4.41E-03 |
| 48 | GO:0043022: ribosome binding | 4.69E-03 |
| 49 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 5.37E-03 |
| 50 | GO:0015238: drug transmembrane transporter activity | 5.74E-03 |
| 51 | GO:0016491: oxidoreductase activity | 6.21E-03 |
| 52 | GO:0005381: iron ion transmembrane transporter activity | 6.83E-03 |
| 53 | GO:0003723: RNA binding | 7.35E-03 |
| 54 | GO:0004177: aminopeptidase activity | 8.42E-03 |
| 55 | GO:0015386: potassium:proton antiporter activity | 8.42E-03 |
| 56 | GO:0004364: glutathione transferase activity | 8.58E-03 |
| 57 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.01E-02 |
| 58 | GO:0008146: sulfotransferase activity | 1.20E-02 |
| 59 | GO:0031409: pigment binding | 1.29E-02 |
| 60 | GO:0051536: iron-sulfur cluster binding | 1.39E-02 |
| 61 | GO:0043424: protein histidine kinase binding | 1.49E-02 |
| 62 | GO:0016787: hydrolase activity | 1.60E-02 |
| 63 | GO:0051082: unfolded protein binding | 1.72E-02 |
| 64 | GO:0047134: protein-disulfide reductase activity | 2.03E-02 |
| 65 | GO:0003729: mRNA binding | 2.33E-02 |
| 66 | GO:0015297: antiporter activity | 2.85E-02 |
| 67 | GO:0005509: calcium ion binding | 3.26E-02 |
| 68 | GO:0016597: amino acid binding | 3.28E-02 |
| 69 | GO:0003743: translation initiation factor activity | 3.48E-02 |
| 70 | GO:0042802: identical protein binding | 3.78E-02 |
| 71 | GO:0004721: phosphoprotein phosphatase activity | 3.84E-02 |
| 72 | GO:0008236: serine-type peptidase activity | 3.98E-02 |
| 73 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 3.98E-02 |
| 74 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.98E-02 |
| 75 | GO:0004222: metalloendopeptidase activity | 4.43E-02 |
| 76 | GO:0008168: methyltransferase activity | 4.43E-02 |
| 77 | GO:0016788: hydrolase activity, acting on ester bonds | 4.68E-02 |
| 78 | GO:0003746: translation elongation factor activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.55E-71 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.33E-37 |
| 3 | GO:0009570: chloroplast stroma | 2.47E-31 |
| 4 | GO:0009941: chloroplast envelope | 9.65E-27 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 8.30E-26 |
| 6 | GO:0009579: thylakoid | 3.36E-25 |
| 7 | GO:0031977: thylakoid lumen | 5.47E-15 |
| 8 | GO:0009534: chloroplast thylakoid | 7.34E-11 |
| 9 | GO:0031969: chloroplast membrane | 5.63E-09 |
| 10 | GO:0009523: photosystem II | 5.39E-07 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 3.36E-06 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.17E-05 |
| 13 | GO:0005840: ribosome | 1.43E-05 |
| 14 | GO:0019898: extrinsic component of membrane | 1.68E-05 |
| 15 | GO:0030095: chloroplast photosystem II | 5.02E-05 |
| 16 | GO:0042651: thylakoid membrane | 9.78E-05 |
| 17 | GO:0009547: plastid ribosome | 2.65E-04 |
| 18 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.65E-04 |
| 19 | GO:0030981: cortical microtubule cytoskeleton | 5.83E-04 |
| 20 | GO:0000312: plastid small ribosomal subunit | 8.73E-04 |
| 21 | GO:0009528: plastid inner membrane | 9.47E-04 |
| 22 | GO:0010007: magnesium chelatase complex | 9.47E-04 |
| 23 | GO:0016020: membrane | 1.59E-03 |
| 24 | GO:0009527: plastid outer membrane | 1.81E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 2.93E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 4.04E-03 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 4.19E-03 |
| 28 | GO:0015934: large ribosomal subunit | 6.32E-03 |
| 29 | GO:0000311: plastid large ribosomal subunit | 9.26E-03 |
| 30 | GO:0032040: small-subunit processome | 9.26E-03 |
| 31 | GO:0030076: light-harvesting complex | 1.20E-02 |
| 32 | GO:0043234: protein complex | 1.29E-02 |
| 33 | GO:0022625: cytosolic large ribosomal subunit | 1.44E-02 |
| 34 | GO:0009532: plastid stroma | 1.59E-02 |
| 35 | GO:0009536: plastid | 1.68E-02 |
| 36 | GO:0010287: plastoglobule | 2.05E-02 |
| 37 | GO:0009522: photosystem I | 2.38E-02 |
| 38 | GO:0010319: stromule | 3.15E-02 |
| 39 | GO:0005778: peroxisomal membrane | 3.15E-02 |
| 40 | GO:0046658: anchored component of plasma membrane | 3.94E-02 |
| 41 | GO:0022627: cytosolic small ribosomal subunit | 3.94E-02 |
| 42 | GO:0009707: chloroplast outer membrane | 4.13E-02 |
| 43 | GO:0022626: cytosolic ribosome | 4.26E-02 |