GO Enrichment Analysis of Co-expressed Genes with
AT4G32590
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 1.42E-07 |
| 7 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.47E-07 |
| 8 | GO:0006000: fructose metabolic process | 1.70E-06 |
| 9 | GO:0015994: chlorophyll metabolic process | 7.70E-06 |
| 10 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.95E-05 |
| 11 | GO:0019252: starch biosynthetic process | 3.21E-05 |
| 12 | GO:0006002: fructose 6-phosphate metabolic process | 6.27E-05 |
| 13 | GO:0010027: thylakoid membrane organization | 6.37E-05 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.14E-05 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 9.14E-05 |
| 16 | GO:0065002: intracellular protein transmembrane transport | 9.14E-05 |
| 17 | GO:0006106: fumarate metabolic process | 9.14E-05 |
| 18 | GO:0010028: xanthophyll cycle | 9.14E-05 |
| 19 | GO:0034337: RNA folding | 9.14E-05 |
| 20 | GO:0043953: protein transport by the Tat complex | 9.14E-05 |
| 21 | GO:0009773: photosynthetic electron transport in photosystem I | 1.33E-04 |
| 22 | GO:0005983: starch catabolic process | 1.54E-04 |
| 23 | GO:0006094: gluconeogenesis | 1.77E-04 |
| 24 | GO:0005986: sucrose biosynthetic process | 1.77E-04 |
| 25 | GO:0010207: photosystem II assembly | 2.02E-04 |
| 26 | GO:0035304: regulation of protein dephosphorylation | 2.16E-04 |
| 27 | GO:0018026: peptidyl-lysine monomethylation | 2.16E-04 |
| 28 | GO:0016122: xanthophyll metabolic process | 2.16E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.16E-04 |
| 30 | GO:0006518: peptide metabolic process | 3.61E-04 |
| 31 | GO:0016050: vesicle organization | 3.61E-04 |
| 32 | GO:1902448: positive regulation of shade avoidance | 3.61E-04 |
| 33 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 5.20E-04 |
| 34 | GO:0010021: amylopectin biosynthetic process | 6.90E-04 |
| 35 | GO:0010109: regulation of photosynthesis | 6.90E-04 |
| 36 | GO:0009765: photosynthesis, light harvesting | 6.90E-04 |
| 37 | GO:0045727: positive regulation of translation | 6.90E-04 |
| 38 | GO:0032543: mitochondrial translation | 8.73E-04 |
| 39 | GO:0010438: cellular response to sulfur starvation | 8.73E-04 |
| 40 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.07E-03 |
| 41 | GO:0042549: photosystem II stabilization | 1.07E-03 |
| 42 | GO:0016554: cytidine to uridine editing | 1.07E-03 |
| 43 | GO:0009735: response to cytokinin | 1.17E-03 |
| 44 | GO:1901259: chloroplast rRNA processing | 1.27E-03 |
| 45 | GO:0010439: regulation of glucosinolate biosynthetic process | 1.72E-03 |
| 46 | GO:0010492: maintenance of shoot apical meristem identity | 1.72E-03 |
| 47 | GO:0005978: glycogen biosynthetic process | 1.72E-03 |
| 48 | GO:0032544: plastid translation | 1.96E-03 |
| 49 | GO:0071482: cellular response to light stimulus | 1.96E-03 |
| 50 | GO:0048507: meristem development | 2.21E-03 |
| 51 | GO:0010205: photoinhibition | 2.48E-03 |
| 52 | GO:0009638: phototropism | 2.48E-03 |
| 53 | GO:1900865: chloroplast RNA modification | 2.48E-03 |
| 54 | GO:0019684: photosynthesis, light reaction | 3.03E-03 |
| 55 | GO:0009750: response to fructose | 3.03E-03 |
| 56 | GO:0009682: induced systemic resistance | 3.03E-03 |
| 57 | GO:0016024: CDP-diacylglycerol biosynthetic process | 3.32E-03 |
| 58 | GO:0006108: malate metabolic process | 3.63E-03 |
| 59 | GO:0009785: blue light signaling pathway | 3.63E-03 |
| 60 | GO:0019253: reductive pentose-phosphate cycle | 3.93E-03 |
| 61 | GO:0071732: cellular response to nitric oxide | 4.26E-03 |
| 62 | GO:0005985: sucrose metabolic process | 4.26E-03 |
| 63 | GO:0010025: wax biosynthetic process | 4.58E-03 |
| 64 | GO:0008299: isoprenoid biosynthetic process | 5.27E-03 |
| 65 | GO:0006418: tRNA aminoacylation for protein translation | 5.27E-03 |
| 66 | GO:0016114: terpenoid biosynthetic process | 5.62E-03 |
| 67 | GO:0035428: hexose transmembrane transport | 5.98E-03 |
| 68 | GO:0071369: cellular response to ethylene stimulus | 6.35E-03 |
| 69 | GO:0009625: response to insect | 6.35E-03 |
| 70 | GO:0006012: galactose metabolic process | 6.35E-03 |
| 71 | GO:0005975: carbohydrate metabolic process | 7.32E-03 |
| 72 | GO:0042335: cuticle development | 7.51E-03 |
| 73 | GO:0046323: glucose import | 7.91E-03 |
| 74 | GO:0016032: viral process | 9.60E-03 |
| 75 | GO:1901657: glycosyl compound metabolic process | 1.00E-02 |
| 76 | GO:0071281: cellular response to iron ion | 1.00E-02 |
| 77 | GO:0009567: double fertilization forming a zygote and endosperm | 1.05E-02 |
| 78 | GO:0042128: nitrate assimilation | 1.28E-02 |
| 79 | GO:0015995: chlorophyll biosynthetic process | 1.33E-02 |
| 80 | GO:0016311: dephosphorylation | 1.38E-02 |
| 81 | GO:0018298: protein-chromophore linkage | 1.43E-02 |
| 82 | GO:0009817: defense response to fungus, incompatible interaction | 1.43E-02 |
| 83 | GO:0009631: cold acclimation | 1.59E-02 |
| 84 | GO:0006869: lipid transport | 1.69E-02 |
| 85 | GO:0006099: tricarboxylic acid cycle | 1.75E-02 |
| 86 | GO:0006631: fatty acid metabolic process | 1.91E-02 |
| 87 | GO:0006855: drug transmembrane transport | 2.26E-02 |
| 88 | GO:0006364: rRNA processing | 2.51E-02 |
| 89 | GO:0006857: oligopeptide transport | 2.63E-02 |
| 90 | GO:0009742: brassinosteroid mediated signaling pathway | 3.36E-02 |
| 91 | GO:0055085: transmembrane transport | 4.28E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 3 | GO:0010303: limit dextrinase activity | 0.00E+00 |
| 4 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 5 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 6 | GO:0051060: pullulanase activity | 0.00E+00 |
| 7 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 8 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 9 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.47E-07 |
| 10 | GO:0008266: poly(U) RNA binding | 4.38E-06 |
| 11 | GO:0003959: NADPH dehydrogenase activity | 1.28E-05 |
| 12 | GO:0004856: xylulokinase activity | 9.14E-05 |
| 13 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 9.14E-05 |
| 14 | GO:0004333: fumarate hydratase activity | 9.14E-05 |
| 15 | GO:0010242: oxygen evolving activity | 9.14E-05 |
| 16 | GO:0016630: protochlorophyllide reductase activity | 2.16E-04 |
| 17 | GO:0047746: chlorophyllase activity | 2.16E-04 |
| 18 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.16E-04 |
| 19 | GO:0033201: alpha-1,4-glucan synthase activity | 2.16E-04 |
| 20 | GO:0004751: ribose-5-phosphate isomerase activity | 3.61E-04 |
| 21 | GO:0070402: NADPH binding | 3.61E-04 |
| 22 | GO:0004324: ferredoxin-NADP+ reductase activity | 3.61E-04 |
| 23 | GO:0004373: glycogen (starch) synthase activity | 3.61E-04 |
| 24 | GO:0002161: aminoacyl-tRNA editing activity | 3.61E-04 |
| 25 | GO:0019201: nucleotide kinase activity | 5.20E-04 |
| 26 | GO:0016853: isomerase activity | 6.07E-04 |
| 27 | GO:0009011: starch synthase activity | 6.90E-04 |
| 28 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 6.90E-04 |
| 29 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 6.90E-04 |
| 30 | GO:0016279: protein-lysine N-methyltransferase activity | 6.90E-04 |
| 31 | GO:0004045: aminoacyl-tRNA hydrolase activity | 6.90E-04 |
| 32 | GO:0043495: protein anchor | 6.90E-04 |
| 33 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 8.73E-04 |
| 34 | GO:0004556: alpha-amylase activity | 1.07E-03 |
| 35 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.21E-03 |
| 36 | GO:0004017: adenylate kinase activity | 1.27E-03 |
| 37 | GO:0019899: enzyme binding | 1.49E-03 |
| 38 | GO:0004034: aldose 1-epimerase activity | 1.72E-03 |
| 39 | GO:0047372: acylglycerol lipase activity | 3.03E-03 |
| 40 | GO:0019843: rRNA binding | 4.86E-03 |
| 41 | GO:0005528: FK506 binding | 4.92E-03 |
| 42 | GO:0022891: substrate-specific transmembrane transporter activity | 6.35E-03 |
| 43 | GO:0004812: aminoacyl-tRNA ligase activity | 7.11E-03 |
| 44 | GO:0005355: glucose transmembrane transporter activity | 8.32E-03 |
| 45 | GO:0050662: coenzyme binding | 8.32E-03 |
| 46 | GO:0042802: identical protein binding | 8.51E-03 |
| 47 | GO:0016168: chlorophyll binding | 1.23E-02 |
| 48 | GO:0016787: hydrolase activity | 1.23E-02 |
| 49 | GO:0004721: phosphoprotein phosphatase activity | 1.33E-02 |
| 50 | GO:0102483: scopolin beta-glucosidase activity | 1.33E-02 |
| 51 | GO:0004222: metalloendopeptidase activity | 1.54E-02 |
| 52 | GO:0030145: manganese ion binding | 1.59E-02 |
| 53 | GO:0003746: translation elongation factor activity | 1.69E-02 |
| 54 | GO:0008422: beta-glucosidase activity | 1.80E-02 |
| 55 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.80E-02 |
| 56 | GO:0005198: structural molecule activity | 2.20E-02 |
| 57 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.26E-02 |
| 58 | GO:0016491: oxidoreductase activity | 2.39E-02 |
| 59 | GO:0016874: ligase activity | 3.09E-02 |
| 60 | GO:0022857: transmembrane transporter activity | 3.09E-02 |
| 61 | GO:0005524: ATP binding | 3.14E-02 |
| 62 | GO:0016746: transferase activity, transferring acyl groups | 3.29E-02 |
| 63 | GO:0008026: ATP-dependent helicase activity | 3.36E-02 |
| 64 | GO:0015144: carbohydrate transmembrane transporter activity | 4.30E-02 |
| 65 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.52E-02 |
| 66 | GO:0005351: sugar:proton symporter activity | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 9.10E-31 |
| 3 | GO:0009534: chloroplast thylakoid | 1.52E-21 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.47E-16 |
| 5 | GO:0009570: chloroplast stroma | 3.90E-16 |
| 6 | GO:0009941: chloroplast envelope | 1.78E-10 |
| 7 | GO:0010287: plastoglobule | 8.03E-08 |
| 8 | GO:0009579: thylakoid | 3.16E-07 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 5.61E-05 |
| 10 | GO:0045239: tricarboxylic acid cycle enzyme complex | 9.14E-05 |
| 11 | GO:0031361: integral component of thylakoid membrane | 9.14E-05 |
| 12 | GO:0031977: thylakoid lumen | 1.72E-04 |
| 13 | GO:0030095: chloroplast photosystem II | 2.02E-04 |
| 14 | GO:0031969: chloroplast membrane | 3.07E-04 |
| 15 | GO:0009654: photosystem II oxygen evolving complex | 3.15E-04 |
| 16 | GO:0033281: TAT protein transport complex | 3.61E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 6.49E-04 |
| 18 | GO:0009501: amyloplast | 1.72E-03 |
| 19 | GO:0032040: small-subunit processome | 3.32E-03 |
| 20 | GO:0009508: plastid chromosome | 3.63E-03 |
| 21 | GO:0042651: thylakoid membrane | 5.27E-03 |
| 22 | GO:0009523: photosystem II | 8.74E-03 |
| 23 | GO:0010319: stromule | 1.09E-02 |
| 24 | GO:0009295: nucleoid | 1.09E-02 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 1.19E-02 |
| 26 | GO:0016021: integral component of membrane | 2.15E-02 |
| 27 | GO:0048046: apoplast | 2.71E-02 |
| 28 | GO:0009706: chloroplast inner membrane | 3.22E-02 |
| 29 | GO:0009705: plant-type vacuole membrane | 4.75E-02 |