Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G32570

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018023: peptidyl-lysine trimethylation0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:0000372: Group I intron splicing0.00E+00
4GO:1900000: regulation of anthocyanin catabolic process0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0090706: specification of plant organ position0.00E+00
7GO:0045014: negative regulation of transcription by glucose0.00E+00
8GO:0010207: photosystem II assembly3.46E-07
9GO:0015995: chlorophyll biosynthetic process6.18E-07
10GO:0035304: regulation of protein dephosphorylation1.52E-06
11GO:0006655: phosphatidylglycerol biosynthetic process5.77E-05
12GO:0042549: photosystem II stabilization5.77E-05
13GO:1901259: chloroplast rRNA processing8.05E-05
14GO:0032544: plastid translation1.72E-04
15GO:0019646: aerobic electron transport chain1.77E-04
16GO:0000476: maturation of 4.5S rRNA1.77E-04
17GO:0000967: rRNA 5'-end processing1.77E-04
18GO:0010480: microsporocyte differentiation1.77E-04
19GO:0010028: xanthophyll cycle1.77E-04
20GO:0034337: RNA folding1.77E-04
21GO:0010450: inflorescence meristem growth1.77E-04
22GO:0010206: photosystem II repair2.09E-04
23GO:0010205: photoinhibition2.51E-04
24GO:0019684: photosynthesis, light reaction3.42E-04
25GO:0016024: CDP-diacylglycerol biosynthetic process3.93E-04
26GO:1900871: chloroplast mRNA modification4.01E-04
27GO:0010541: acropetal auxin transport4.01E-04
28GO:0018026: peptidyl-lysine monomethylation4.01E-04
29GO:0080009: mRNA methylation4.01E-04
30GO:0016122: xanthophyll metabolic process4.01E-04
31GO:0034470: ncRNA processing4.01E-04
32GO:0010275: NAD(P)H dehydrogenase complex assembly4.01E-04
33GO:0010160: formation of animal organ boundary6.55E-04
34GO:0090391: granum assembly6.55E-04
35GO:0045493: xylan catabolic process6.55E-04
36GO:0045165: cell fate commitment6.55E-04
37GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement6.55E-04
38GO:0009664: plant-type cell wall organization8.41E-04
39GO:0080170: hydrogen peroxide transmembrane transport9.34E-04
40GO:0043481: anthocyanin accumulation in tissues in response to UV light9.34E-04
41GO:0009052: pentose-phosphate shunt, non-oxidative branch9.34E-04
42GO:0010239: chloroplast mRNA processing9.34E-04
43GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.92E-04
44GO:0048443: stamen development1.07E-03
45GO:0015994: chlorophyll metabolic process1.24E-03
46GO:0030104: water homeostasis1.24E-03
47GO:0080022: primary root development1.25E-03
48GO:0034220: ion transmembrane transport1.25E-03
49GO:0042631: cellular response to water deprivation1.25E-03
50GO:0045038: protein import into chloroplast thylakoid membrane1.57E-03
51GO:1902183: regulation of shoot apical meristem development1.57E-03
52GO:0010438: cellular response to sulfur starvation1.57E-03
53GO:0010158: abaxial cell fate specification1.57E-03
54GO:0009913: epidermal cell differentiation1.94E-03
55GO:0060918: auxin transport1.94E-03
56GO:0009759: indole glucosinolate biosynthetic process1.94E-03
57GO:0006751: glutathione catabolic process1.94E-03
58GO:0000470: maturation of LSU-rRNA1.94E-03
59GO:0009828: plant-type cell wall loosening2.00E-03
60GO:0042372: phylloquinone biosynthetic process2.32E-03
61GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.32E-03
62GO:0010019: chloroplast-nucleus signaling pathway2.32E-03
63GO:0010027: thylakoid membrane organization2.38E-03
64GO:0048437: floral organ development2.74E-03
65GO:0006614: SRP-dependent cotranslational protein targeting to membrane2.74E-03
66GO:0010196: nonphotochemical quenching2.74E-03
67GO:0050829: defense response to Gram-negative bacterium2.74E-03
68GO:1900057: positive regulation of leaf senescence2.74E-03
69GO:0009772: photosynthetic electron transport in photosystem II2.74E-03
70GO:0010411: xyloglucan metabolic process2.80E-03
71GO:0005978: glycogen biosynthetic process3.17E-03
72GO:0006353: DNA-templated transcription, termination3.17E-03
73GO:0009690: cytokinin metabolic process3.17E-03
74GO:0006605: protein targeting3.17E-03
75GO:0048564: photosystem I assembly3.17E-03
76GO:0010093: specification of floral organ identity3.63E-03
77GO:0071482: cellular response to light stimulus3.63E-03
78GO:2000024: regulation of leaf development4.10E-03
79GO:0000373: Group II intron splicing4.10E-03
80GO:0048589: developmental growth4.10E-03
81GO:0009245: lipid A biosynthetic process4.10E-03
82GO:0055062: phosphate ion homeostasis5.11E-03
83GO:0006535: cysteine biosynthetic process from serine5.11E-03
84GO:0009416: response to light stimulus5.37E-03
85GO:0009773: photosynthetic electron transport in photosystem I5.65E-03
86GO:0043085: positive regulation of catalytic activity5.65E-03
87GO:0048229: gametophyte development5.65E-03
88GO:0002213: defense response to insect6.20E-03
89GO:0010152: pollen maturation6.20E-03
90GO:0008361: regulation of cell size6.20E-03
91GO:0010588: cotyledon vascular tissue pattern formation6.78E-03
92GO:0009718: anthocyanin-containing compound biosynthetic process6.78E-03
93GO:0010075: regulation of meristem growth6.78E-03
94GO:0009933: meristem structural organization7.37E-03
95GO:0010540: basipetal auxin transport7.37E-03
96GO:0009934: regulation of meristem structural organization7.37E-03
97GO:0015979: photosynthesis7.68E-03
98GO:0010030: positive regulation of seed germination7.98E-03
99GO:0006636: unsaturated fatty acid biosynthetic process8.61E-03
100GO:0006833: water transport8.61E-03
101GO:0000162: tryptophan biosynthetic process8.61E-03
102GO:0009944: polarity specification of adaxial/abaxial axis9.26E-03
103GO:0019344: cysteine biosynthetic process9.26E-03
104GO:0032259: methylation1.01E-02
105GO:0016998: cell wall macromolecule catabolic process1.06E-02
106GO:0071369: cellular response to ethylene stimulus1.20E-02
107GO:0008152: metabolic process1.21E-02
108GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.35E-02
109GO:0042744: hydrogen peroxide catabolic process1.38E-02
110GO:0042335: cuticle development1.43E-02
111GO:0000413: protein peptidyl-prolyl isomerization1.43E-02
112GO:0010087: phloem or xylem histogenesis1.43E-02
113GO:0048653: anther development1.43E-02
114GO:0010154: fruit development1.50E-02
115GO:0009958: positive gravitropism1.50E-02
116GO:0010305: leaf vascular tissue pattern formation1.50E-02
117GO:0006633: fatty acid biosynthetic process1.52E-02
118GO:0009734: auxin-activated signaling pathway1.64E-02
119GO:0048825: cotyledon development1.66E-02
120GO:0019252: starch biosynthetic process1.66E-02
121GO:0007623: circadian rhythm1.68E-02
122GO:0000302: response to reactive oxygen species1.75E-02
123GO:0030163: protein catabolic process1.91E-02
124GO:1901657: glycosyl compound metabolic process1.91E-02
125GO:0007166: cell surface receptor signaling pathway1.92E-02
126GO:0009735: response to cytokinin1.97E-02
127GO:0009639: response to red or far red light2.00E-02
128GO:0009567: double fertilization forming a zygote and endosperm2.00E-02
129GO:0051607: defense response to virus2.18E-02
130GO:0009409: response to cold2.45E-02
131GO:0009627: systemic acquired resistance2.45E-02
132GO:0009826: unidimensional cell growth2.50E-02
133GO:0009658: chloroplast organization2.60E-02
134GO:0009817: defense response to fungus, incompatible interaction2.74E-02
135GO:0010218: response to far red light2.94E-02
136GO:0055085: transmembrane transport2.97E-02
137GO:0009631: cold acclimation3.04E-02
138GO:0048527: lateral root development3.04E-02
139GO:0016051: carbohydrate biosynthetic process3.24E-02
140GO:0009637: response to blue light3.24E-02
141GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.33E-02
142GO:0034599: cellular response to oxidative stress3.35E-02
143GO:0046777: protein autophosphorylation3.44E-02
144GO:0006631: fatty acid metabolic process3.67E-02
145GO:0009640: photomorphogenesis3.88E-02
146GO:0009926: auxin polar transport3.88E-02
147GO:0042546: cell wall biogenesis4.00E-02
148GO:0006364: rRNA processing4.80E-02
149GO:0006397: mRNA processing4.93E-02
RankGO TermAdjusted P value
1GO:0046422: violaxanthin de-epoxidase activity0.00E+00
2GO:0010242: oxygen evolving activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0005528: FK506 binding7.56E-07
8GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.54E-06
9GO:0016851: magnesium chelatase activity1.30E-05
10GO:0019843: rRNA binding2.70E-05
11GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity1.77E-04
12GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity1.77E-04
13GO:0080062: cytokinin 9-beta-glucosyltransferase activity1.77E-04
14GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.77E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity1.77E-04
16GO:0046906: tetrapyrrole binding1.77E-04
17GO:0030794: (S)-coclaurine-N-methyltransferase activity1.77E-04
18GO:0047807: cytokinin 7-beta-glucosyltransferase activity1.77E-04
19GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity4.01E-04
20GO:0003839: gamma-glutamylcyclotransferase activity4.01E-04
21GO:0004312: fatty acid synthase activity4.01E-04
22GO:0008266: poly(U) RNA binding5.04E-04
23GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.55E-04
24GO:0004751: ribose-5-phosphate isomerase activity6.55E-04
25GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity6.55E-04
26GO:0043023: ribosomal large subunit binding9.34E-04
27GO:0009044: xylan 1,4-beta-xylosidase activity1.24E-03
28GO:0008878: glucose-1-phosphate adenylyltransferase activity1.24E-03
29GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.24E-03
30GO:0046556: alpha-L-arabinofuranosidase activity1.24E-03
31GO:0016279: protein-lysine N-methyltransferase activity1.24E-03
32GO:0010011: auxin binding1.24E-03
33GO:0004045: aminoacyl-tRNA hydrolase activity1.24E-03
34GO:0004130: cytochrome-c peroxidase activity1.94E-03
35GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.94E-03
36GO:0042578: phosphoric ester hydrolase activity1.94E-03
37GO:0031177: phosphopantetheine binding1.94E-03
38GO:0000035: acyl binding2.32E-03
39GO:0004124: cysteine synthase activity2.32E-03
40GO:0015250: water channel activity2.38E-03
41GO:0019899: enzyme binding2.74E-03
42GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process3.17E-03
43GO:0003723: RNA binding3.95E-03
44GO:0071949: FAD binding4.10E-03
45GO:0015020: glucuronosyltransferase activity5.11E-03
46GO:0016787: hydrolase activity5.18E-03
47GO:0047372: acylglycerol lipase activity5.65E-03
48GO:0010329: auxin efflux transmembrane transporter activity6.78E-03
49GO:0031072: heat shock protein binding6.78E-03
50GO:0009982: pseudouridine synthase activity6.78E-03
51GO:0016491: oxidoreductase activity6.99E-03
52GO:0080043: quercetin 3-O-glucosyltransferase activity8.82E-03
53GO:0080044: quercetin 7-O-glucosyltransferase activity8.82E-03
54GO:0003954: NADH dehydrogenase activity9.26E-03
55GO:0043424: protein histidine kinase binding9.92E-03
56GO:0033612: receptor serine/threonine kinase binding1.06E-02
57GO:0005525: GTP binding1.14E-02
58GO:0003756: protein disulfide isomerase activity1.27E-02
59GO:0046910: pectinesterase inhibitor activity1.56E-02
60GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.56E-02
61GO:0010181: FMN binding1.58E-02
62GO:0019901: protein kinase binding1.66E-02
63GO:0016762: xyloglucan:xyloglucosyl transferase activity1.75E-02
64GO:0008194: UDP-glycosyltransferase activity1.88E-02
65GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.13E-02
66GO:0008375: acetylglucosaminyltransferase activity2.45E-02
67GO:0008168: methyltransferase activity2.50E-02
68GO:0102483: scopolin beta-glucosidase activity2.55E-02
69GO:0016798: hydrolase activity, acting on glycosyl bonds2.55E-02
70GO:0004601: peroxidase activity2.60E-02
71GO:0008236: serine-type peptidase activity2.64E-02
72GO:0016788: hydrolase activity, acting on ester bonds2.65E-02
73GO:0005096: GTPase activator activity2.84E-02
74GO:0005515: protein binding3.18E-02
75GO:0003746: translation elongation factor activity3.24E-02
76GO:0003993: acid phosphatase activity3.35E-02
77GO:0008422: beta-glucosidase activity3.45E-02
78GO:0004871: signal transducer activity4.03E-02
79GO:0043621: protein self-association4.11E-02
80GO:0005198: structural molecule activity4.22E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0009507: chloroplast3.27E-29
4GO:0009534: chloroplast thylakoid9.89E-21
5GO:0009570: chloroplast stroma2.83E-18
6GO:0009543: chloroplast thylakoid lumen1.33E-15
7GO:0009535: chloroplast thylakoid membrane2.69E-15
8GO:0031977: thylakoid lumen8.73E-13
9GO:0009941: chloroplast envelope2.13E-12
10GO:0009579: thylakoid6.25E-09
11GO:0010007: magnesium chelatase complex5.61E-06
12GO:0030095: chloroplast photosystem II2.03E-05
13GO:0009533: chloroplast stromal thylakoid1.07E-04
14GO:0043674: columella1.77E-04
15GO:0009515: granal stacked thylakoid1.77E-04
16GO:0010287: plastoglobule2.55E-04
17GO:0031304: intrinsic component of mitochondrial inner membrane4.01E-04
18GO:0030093: chloroplast photosystem I4.01E-04
19GO:0009508: plastid chromosome4.47E-04
20GO:0009509: chromoplast6.55E-04
21GO:0009654: photosystem II oxygen evolving complex7.64E-04
22GO:0009531: secondary cell wall9.34E-04
23GO:0031969: chloroplast membrane1.24E-03
24GO:0019898: extrinsic component of membrane1.55E-03
25GO:0055035: plastid thylakoid membrane1.57E-03
26GO:0009536: plastid1.72E-03
27GO:0009295: nucleoid2.12E-03
28GO:0030529: intracellular ribonucleoprotein complex2.38E-03
29GO:0042807: central vacuole2.74E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting3.63E-03
31GO:0042644: chloroplast nucleoid4.10E-03
32GO:0008180: COP9 signalosome4.10E-03
33GO:0055028: cortical microtubule5.11E-03
34GO:0032040: small-subunit processome6.20E-03
35GO:0016602: CCAAT-binding factor complex6.78E-03
36GO:0000312: plastid small ribosomal subunit7.37E-03
37GO:0009532: plastid stroma1.06E-02
38GO:0048046: apoplast1.45E-02
39GO:0009522: photosystem I1.58E-02
40GO:0005618: cell wall1.70E-02
41GO:0071944: cell periphery1.91E-02
42GO:0009505: plant-type cell wall2.19E-02
43GO:0019005: SCF ubiquitin ligase complex2.74E-02
44GO:0000502: proteasome complex4.80E-02
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Gene type



Gene DE type