Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0016553: base conversion or substitution editing0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
12GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0006429: leucyl-tRNA aminoacylation0.00E+00
15GO:0009773: photosynthetic electron transport in photosystem I1.84E-12
16GO:0015979: photosynthesis1.92E-12
17GO:0006000: fructose metabolic process5.16E-08
18GO:0032544: plastid translation2.74E-07
19GO:1902326: positive regulation of chlorophyll biosynthetic process6.00E-06
20GO:0030388: fructose 1,6-bisphosphate metabolic process6.00E-06
21GO:0010027: thylakoid membrane organization6.04E-06
22GO:0006002: fructose 6-phosphate metabolic process1.85E-05
23GO:0006518: peptide metabolic process2.10E-05
24GO:0009735: response to cytokinin2.24E-05
25GO:0042335: cuticle development2.76E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.63E-05
27GO:0045727: positive regulation of translation8.19E-05
28GO:0015995: chlorophyll biosynthetic process1.33E-04
29GO:0018298: protein-chromophore linkage1.59E-04
30GO:0009658: chloroplast organization2.08E-04
31GO:0042254: ribosome biogenesis2.17E-04
32GO:0009443: pyridoxal 5'-phosphate salvage3.65E-04
33GO:0043489: RNA stabilization3.65E-04
34GO:0000481: maturation of 5S rRNA3.65E-04
35GO:0033481: galacturonate biosynthetic process3.65E-04
36GO:0006106: fumarate metabolic process3.65E-04
37GO:0043609: regulation of carbon utilization3.65E-04
38GO:1902458: positive regulation of stomatal opening3.65E-04
39GO:0034337: RNA folding3.65E-04
40GO:0071588: hydrogen peroxide mediated signaling pathway3.65E-04
41GO:0008610: lipid biosynthetic process4.05E-04
42GO:0009657: plastid organization4.96E-04
43GO:0071482: cellular response to light stimulus4.96E-04
44GO:1900865: chloroplast RNA modification7.02E-04
45GO:0043255: regulation of carbohydrate biosynthetic process7.94E-04
46GO:0045717: negative regulation of fatty acid biosynthetic process7.94E-04
47GO:0034755: iron ion transmembrane transport7.94E-04
48GO:1903426: regulation of reactive oxygen species biosynthetic process7.94E-04
49GO:0010270: photosystem II oxygen evolving complex assembly7.94E-04
50GO:0006006: glucose metabolic process1.22E-03
51GO:0006094: gluconeogenesis1.22E-03
52GO:0005986: sucrose biosynthetic process1.22E-03
53GO:1902448: positive regulation of shade avoidance1.29E-03
54GO:0019253: reductive pentose-phosphate cycle1.37E-03
55GO:0009631: cold acclimation1.50E-03
56GO:0019048: modulation by virus of host morphology or physiology1.85E-03
57GO:1901332: negative regulation of lateral root development1.85E-03
58GO:0031048: chromatin silencing by small RNA1.85E-03
59GO:0043572: plastid fission1.85E-03
60GO:2001141: regulation of RNA biosynthetic process1.85E-03
61GO:0006633: fatty acid biosynthetic process1.97E-03
62GO:0009768: photosynthesis, light harvesting in photosystem I2.09E-03
63GO:0061077: chaperone-mediated protein folding2.30E-03
64GO:0055114: oxidation-reduction process2.39E-03
65GO:0006810: transport2.45E-03
66GO:0015994: chlorophyll metabolic process2.49E-03
67GO:0051567: histone H3-K9 methylation2.49E-03
68GO:0010109: regulation of photosynthesis2.49E-03
69GO:0009765: photosynthesis, light harvesting2.49E-03
70GO:0009306: protein secretion2.98E-03
71GO:0032543: mitochondrial translation3.18E-03
72GO:0006564: L-serine biosynthetic process3.18E-03
73GO:0006656: phosphatidylcholine biosynthetic process3.18E-03
74GO:0045038: protein import into chloroplast thylakoid membrane3.18E-03
75GO:0006461: protein complex assembly3.18E-03
76GO:0006364: rRNA processing3.42E-03
77GO:0006412: translation3.88E-03
78GO:0009913: epidermal cell differentiation3.93E-03
79GO:0010358: leaf shaping3.93E-03
80GO:0016554: cytidine to uridine editing3.93E-03
81GO:0010190: cytochrome b6f complex assembly3.93E-03
82GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.93E-03
83GO:0010337: regulation of salicylic acid metabolic process3.93E-03
84GO:0006828: manganese ion transport3.93E-03
85GO:0032973: amino acid export3.93E-03
86GO:0016458: gene silencing3.93E-03
87GO:0006014: D-ribose metabolic process3.93E-03
88GO:0042549: photosystem II stabilization3.93E-03
89GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.93E-03
90GO:0009854: oxidative photosynthetic carbon pathway4.74E-03
91GO:0010019: chloroplast-nucleus signaling pathway4.74E-03
92GO:0010196: nonphotochemical quenching5.60E-03
93GO:0009645: response to low light intensity stimulus5.60E-03
94GO:0006400: tRNA modification5.60E-03
95GO:0050829: defense response to Gram-negative bacterium5.60E-03
96GO:0043090: amino acid import5.60E-03
97GO:0009409: response to cold5.89E-03
98GO:0030091: protein repair6.51E-03
99GO:0006605: protein targeting6.51E-03
100GO:0042255: ribosome assembly6.51E-03
101GO:0032508: DNA duplex unwinding6.51E-03
102GO:0006353: DNA-templated transcription, termination6.51E-03
103GO:2000070: regulation of response to water deprivation6.51E-03
104GO:0010492: maintenance of shoot apical meristem identity6.51E-03
105GO:0007186: G-protein coupled receptor signaling pathway7.47E-03
106GO:0017004: cytochrome complex assembly7.47E-03
107GO:0015996: chlorophyll catabolic process7.47E-03
108GO:0009416: response to light stimulus7.96E-03
109GO:0010206: photosystem II repair8.47E-03
110GO:0080144: amino acid homeostasis8.47E-03
111GO:0048507: meristem development8.47E-03
112GO:0009051: pentose-phosphate shunt, oxidative branch8.47E-03
113GO:0006869: lipid transport9.30E-03
114GO:0010205: photoinhibition9.53E-03
115GO:0006779: porphyrin-containing compound biosynthetic process9.53E-03
116GO:0006782: protoporphyrinogen IX biosynthetic process1.06E-02
117GO:0006032: chitin catabolic process1.06E-02
118GO:0030422: production of siRNA involved in RNA interference1.06E-02
119GO:0009637: response to blue light1.12E-02
120GO:0009853: photorespiration1.12E-02
121GO:0034599: cellular response to oxidative stress1.17E-02
122GO:0019684: photosynthesis, light reaction1.18E-02
123GO:0006816: calcium ion transport1.18E-02
124GO:0009089: lysine biosynthetic process via diaminopimelate1.18E-02
125GO:0009073: aromatic amino acid family biosynthetic process1.18E-02
126GO:0043085: positive regulation of catalytic activity1.18E-02
127GO:0006879: cellular iron ion homeostasis1.18E-02
128GO:0006352: DNA-templated transcription, initiation1.18E-02
129GO:0000272: polysaccharide catabolic process1.18E-02
130GO:0006415: translational termination1.18E-02
131GO:0009750: response to fructose1.18E-02
132GO:0018119: peptidyl-cysteine S-nitrosylation1.18E-02
133GO:0000038: very long-chain fatty acid metabolic process1.18E-02
134GO:0005983: starch catabolic process1.30E-02
135GO:0045037: protein import into chloroplast stroma1.30E-02
136GO:0010628: positive regulation of gene expression1.42E-02
137GO:0010102: lateral root morphogenesis1.42E-02
138GO:0006108: malate metabolic process1.42E-02
139GO:0009718: anthocyanin-containing compound biosynthetic process1.42E-02
140GO:0010114: response to red light1.44E-02
141GO:0010207: photosystem II assembly1.55E-02
142GO:0010020: chloroplast fission1.55E-02
143GO:0009825: multidimensional cell growth1.68E-02
144GO:0010167: response to nitrate1.68E-02
145GO:0005985: sucrose metabolic process1.68E-02
146GO:0071732: cellular response to nitric oxide1.68E-02
147GO:0090351: seedling development1.68E-02
148GO:0010053: root epidermal cell differentiation1.68E-02
149GO:0009225: nucleotide-sugar metabolic process1.68E-02
150GO:0006855: drug transmembrane transport1.69E-02
151GO:0010025: wax biosynthetic process1.81E-02
152GO:0006636: unsaturated fatty acid biosynthetic process1.81E-02
153GO:0019762: glucosinolate catabolic process1.81E-02
154GO:0000027: ribosomal large subunit assembly1.95E-02
155GO:0009809: lignin biosynthetic process1.95E-02
156GO:0016575: histone deacetylation2.09E-02
157GO:0006418: tRNA aminoacylation for protein translation2.09E-02
158GO:0006306: DNA methylation2.24E-02
159GO:0016998: cell wall macromolecule catabolic process2.24E-02
160GO:0006096: glycolytic process2.31E-02
161GO:0016226: iron-sulfur cluster assembly2.38E-02
162GO:0035428: hexose transmembrane transport2.38E-02
163GO:0006730: one-carbon metabolic process2.38E-02
164GO:0071369: cellular response to ethylene stimulus2.54E-02
165GO:0008033: tRNA processing3.01E-02
166GO:0000413: protein peptidyl-prolyl isomerization3.01E-02
167GO:0042631: cellular response to water deprivation3.01E-02
168GO:0045454: cell redox homeostasis3.08E-02
169GO:0006662: glycerol ether metabolic process3.18E-02
170GO:0010182: sugar mediated signaling pathway3.18E-02
171GO:0046323: glucose import3.18E-02
172GO:0006342: chromatin silencing3.18E-02
173GO:0009741: response to brassinosteroid3.18E-02
174GO:0010268: brassinosteroid homeostasis3.18E-02
175GO:0006508: proteolysis3.28E-02
176GO:0019252: starch biosynthetic process3.52E-02
177GO:0080156: mitochondrial mRNA modification3.69E-02
178GO:0071554: cell wall organization or biogenesis3.69E-02
179GO:0000302: response to reactive oxygen species3.69E-02
180GO:0016132: brassinosteroid biosynthetic process3.69E-02
181GO:0055085: transmembrane transport3.71E-02
182GO:0032259: methylation3.78E-02
183GO:0016032: viral process3.87E-02
184GO:0032502: developmental process3.87E-02
185GO:0042744: hydrogen peroxide catabolic process3.95E-02
186GO:0071281: cellular response to iron ion4.05E-02
187GO:0016125: sterol metabolic process4.23E-02
188GO:0071805: potassium ion transmembrane transport4.42E-02
189GO:0009793: embryo development ending in seed dormancy4.47E-02
190GO:0008152: metabolic process4.50E-02
191GO:0051607: defense response to virus4.61E-02
192GO:0009451: RNA modification4.88E-02
193GO:0009816: defense response to bacterium, incompatible interaction4.99E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
4GO:0008887: glycerate kinase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
9GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
10GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0042903: tubulin deacetylase activity0.00E+00
13GO:0004823: leucine-tRNA ligase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
16GO:0019843: rRNA binding1.92E-11
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.00E-06
18GO:0004033: aldo-keto reductase (NADP) activity1.29E-05
19GO:0004222: metalloendopeptidase activity1.52E-05
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.57E-05
21GO:0043495: protein anchor8.19E-05
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.19E-05
23GO:0016168: chlorophyll binding1.09E-04
24GO:0005528: FK506 binding1.66E-04
25GO:0019899: enzyme binding3.23E-04
26GO:0070006: metalloaminopeptidase activity3.65E-04
27GO:0003867: 4-aminobutyrate transaminase activity3.65E-04
28GO:0045485: omega-6 fatty acid desaturase activity3.65E-04
29GO:0010012: steroid 22-alpha hydroxylase activity3.65E-04
30GO:0004333: fumarate hydratase activity3.65E-04
31GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.65E-04
32GO:0003735: structural constituent of ribosome6.51E-04
33GO:0016630: protochlorophyllide reductase activity7.94E-04
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.94E-04
35GO:0000234: phosphoethanolamine N-methyltransferase activity7.94E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.94E-04
37GO:0008967: phosphoglycolate phosphatase activity7.94E-04
38GO:0047746: chlorophyllase activity7.94E-04
39GO:0010297: heteropolysaccharide binding7.94E-04
40GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.94E-04
41GO:0004617: phosphoglycerate dehydrogenase activity7.94E-04
42GO:0004565: beta-galactosidase activity1.22E-03
43GO:0002161: aminoacyl-tRNA editing activity1.29E-03
44GO:0030267: glyoxylate reductase (NADP) activity1.29E-03
45GO:0070402: NADPH binding1.29E-03
46GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.29E-03
47GO:0008266: poly(U) RNA binding1.37E-03
48GO:0031409: pigment binding1.71E-03
49GO:0048487: beta-tubulin binding1.85E-03
50GO:0016149: translation release factor activity, codon specific1.85E-03
51GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.85E-03
52GO:0035197: siRNA binding1.85E-03
53GO:0015079: potassium ion transmembrane transporter activity2.09E-03
54GO:0016987: sigma factor activity2.49E-03
55GO:0050378: UDP-glucuronate 4-epimerase activity2.49E-03
56GO:0001053: plastid sigma factor activity2.49E-03
57GO:0004345: glucose-6-phosphate dehydrogenase activity2.49E-03
58GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.49E-03
59GO:0022891: substrate-specific transmembrane transporter activity2.74E-03
60GO:0003959: NADPH dehydrogenase activity3.18E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor3.18E-03
62GO:0004040: amidase activity3.18E-03
63GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.28E-03
64GO:0003824: catalytic activity3.74E-03
65GO:0004130: cytochrome-c peroxidase activity3.93E-03
66GO:0016688: L-ascorbate peroxidase activity3.93E-03
67GO:2001070: starch binding3.93E-03
68GO:0050662: coenzyme binding4.05E-03
69GO:0048038: quinone binding4.65E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.74E-03
71GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.74E-03
72GO:0004747: ribokinase activity4.74E-03
73GO:0051920: peroxiredoxin activity4.74E-03
74GO:0004620: phospholipase activity5.60E-03
75GO:0008237: metallopeptidase activity5.99E-03
76GO:0052747: sinapyl alcohol dehydrogenase activity6.51E-03
77GO:0043022: ribosome binding6.51E-03
78GO:0008865: fructokinase activity6.51E-03
79GO:0016209: antioxidant activity6.51E-03
80GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.47E-03
81GO:0003747: translation release factor activity8.47E-03
82GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.47E-03
83GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.79E-03
84GO:0005381: iron ion transmembrane transporter activity9.53E-03
85GO:0005384: manganese ion transmembrane transporter activity9.53E-03
86GO:0030234: enzyme regulator activity1.06E-02
87GO:0004568: chitinase activity1.06E-02
88GO:0008047: enzyme activator activity1.06E-02
89GO:0015386: potassium:proton antiporter activity1.18E-02
90GO:0004177: aminopeptidase activity1.18E-02
91GO:0047372: acylglycerol lipase activity1.18E-02
92GO:0003723: RNA binding1.22E-02
93GO:0050661: NADP binding1.27E-02
94GO:0045551: cinnamyl-alcohol dehydrogenase activity1.30E-02
95GO:0004521: endoribonuclease activity1.30E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.42E-02
97GO:0015095: magnesium ion transmembrane transporter activity1.42E-02
98GO:0031072: heat shock protein binding1.42E-02
99GO:0051287: NAD binding1.75E-02
100GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.81E-02
101GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.81E-02
102GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.81E-02
103GO:0004601: peroxidase activity1.88E-02
104GO:0016788: hydrolase activity, acting on ester bonds1.92E-02
105GO:0051536: iron-sulfur cluster binding1.95E-02
106GO:0004407: histone deacetylase activity1.95E-02
107GO:0003729: mRNA binding1.98E-02
108GO:0004176: ATP-dependent peptidase activity2.24E-02
109GO:0005509: calcium ion binding2.33E-02
110GO:0003727: single-stranded RNA binding2.69E-02
111GO:0052689: carboxylic ester hydrolase activity2.79E-02
112GO:0047134: protein-disulfide reductase activity2.85E-02
113GO:0004812: aminoacyl-tRNA ligase activity2.85E-02
114GO:0004871: signal transducer activity3.26E-02
115GO:0005355: glucose transmembrane transporter activity3.35E-02
116GO:0004791: thioredoxin-disulfide reductase activity3.35E-02
117GO:0004518: nuclease activity3.87E-02
118GO:0016787: hydrolase activity3.89E-02
119GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.05E-02
120GO:0016491: oxidoreductase activity4.20E-02
121GO:0016759: cellulose synthase activity4.23E-02
122GO:0004519: endonuclease activity4.42E-02
123GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.46E-02
124GO:0016597: amino acid binding4.61E-02
125GO:0016413: O-acetyltransferase activity4.61E-02
126GO:0046872: metal ion binding4.98E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009507: chloroplast2.43E-64
3GO:0009535: chloroplast thylakoid membrane3.68E-32
4GO:0009570: chloroplast stroma3.65E-28
5GO:0009941: chloroplast envelope2.05E-26
6GO:0009543: chloroplast thylakoid lumen8.08E-16
7GO:0009579: thylakoid8.51E-13
8GO:0009534: chloroplast thylakoid9.22E-13
9GO:0031977: thylakoid lumen3.06E-12
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.42E-11
11GO:0042651: thylakoid membrane2.37E-07
12GO:0009654: photosystem II oxygen evolving complex2.37E-07
13GO:0019898: extrinsic component of membrane1.88E-06
14GO:0005840: ribosome3.04E-06
15GO:0031969: chloroplast membrane5.81E-05
16GO:0030095: chloroplast photosystem II1.02E-04
17GO:0016021: integral component of membrane1.03E-04
18GO:0048046: apoplast1.83E-04
19GO:0010287: plastoglobule2.28E-04
20GO:0009533: chloroplast stromal thylakoid3.23E-04
21GO:0009782: photosystem I antenna complex3.65E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.65E-04
23GO:0045239: tricarboxylic acid cycle enzyme complex3.65E-04
24GO:0009523: photosystem II5.18E-04
25GO:0010319: stromule7.77E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex7.94E-04
27GO:0009528: plastid inner membrane1.29E-03
28GO:0015934: large ribosomal subunit1.50E-03
29GO:0030076: light-harvesting complex1.53E-03
30GO:0005719: nuclear euchromatin1.85E-03
31GO:0016020: membrane2.31E-03
32GO:0009527: plastid outer membrane2.49E-03
33GO:0009706: chloroplast inner membrane5.36E-03
34GO:0030529: intracellular ribonucleoprotein complex6.72E-03
35GO:0015030: Cajal body9.53E-03
36GO:0000311: plastid large ribosomal subunit1.30E-02
37GO:0032040: small-subunit processome1.30E-02
38GO:0009536: plastid1.37E-02
39GO:0046658: anchored component of plasma membrane1.54E-02
40GO:0009532: plastid stroma2.24E-02
41GO:0009522: photosystem I3.35E-02
42GO:0009505: plant-type cell wall3.88E-02
43GO:0032580: Golgi cisterna membrane4.23E-02
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Gene type



Gene DE type