GO Enrichment Analysis of Co-expressed Genes with
AT4G31780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 2 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 3 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 4 | GO:0033614: chloroplast proton-transporting ATP synthase complex assembly | 0.00E+00 |
| 5 | GO:0019284: L-methionine salvage from S-adenosylmethionine | 0.00E+00 |
| 6 | GO:0019685: photosynthesis, dark reaction | 0.00E+00 |
| 7 | GO:0071482: cellular response to light stimulus | 3.92E-05 |
| 8 | GO:0000023: maltose metabolic process | 6.74E-05 |
| 9 | GO:0010362: negative regulation of anion channel activity by blue light | 6.74E-05 |
| 10 | GO:0080051: cutin transport | 6.74E-05 |
| 11 | GO:0080093: regulation of photorespiration | 6.74E-05 |
| 12 | GO:0031998: regulation of fatty acid beta-oxidation | 6.74E-05 |
| 13 | GO:0009853: photorespiration | 7.43E-05 |
| 14 | GO:0005983: starch catabolic process | 9.94E-05 |
| 15 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.62E-04 |
| 16 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.62E-04 |
| 17 | GO:0015908: fatty acid transport | 1.62E-04 |
| 18 | GO:0009629: response to gravity | 1.62E-04 |
| 19 | GO:0007154: cell communication | 1.62E-04 |
| 20 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.62E-04 |
| 21 | GO:0070828: heterochromatin organization | 2.75E-04 |
| 22 | GO:0009152: purine ribonucleotide biosynthetic process | 3.98E-04 |
| 23 | GO:0046653: tetrahydrofolate metabolic process | 3.98E-04 |
| 24 | GO:2001141: regulation of RNA biosynthetic process | 3.98E-04 |
| 25 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.98E-04 |
| 26 | GO:0019252: starch biosynthetic process | 4.39E-04 |
| 27 | GO:0009902: chloroplast relocation | 5.32E-04 |
| 28 | GO:0010021: amylopectin biosynthetic process | 5.32E-04 |
| 29 | GO:0010222: stem vascular tissue pattern formation | 5.32E-04 |
| 30 | GO:0009735: response to cytokinin | 6.33E-04 |
| 31 | GO:0043097: pyrimidine nucleoside salvage | 6.73E-04 |
| 32 | GO:0006097: glyoxylate cycle | 6.73E-04 |
| 33 | GO:0009416: response to light stimulus | 7.25E-04 |
| 34 | GO:0006206: pyrimidine nucleobase metabolic process | 8.23E-04 |
| 35 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 8.23E-04 |
| 36 | GO:0018298: protein-chromophore linkage | 8.66E-04 |
| 37 | GO:0009658: chloroplast organization | 9.40E-04 |
| 38 | GO:0019509: L-methionine salvage from methylthioadenosine | 9.79E-04 |
| 39 | GO:0042026: protein refolding | 9.79E-04 |
| 40 | GO:1901259: chloroplast rRNA processing | 9.79E-04 |
| 41 | GO:0006458: 'de novo' protein folding | 9.79E-04 |
| 42 | GO:0009854: oxidative photosynthetic carbon pathway | 9.79E-04 |
| 43 | GO:0009645: response to low light intensity stimulus | 1.14E-03 |
| 44 | GO:0048564: photosystem I assembly | 1.32E-03 |
| 45 | GO:0005978: glycogen biosynthetic process | 1.32E-03 |
| 46 | GO:0009704: de-etiolation | 1.32E-03 |
| 47 | GO:0046777: protein autophosphorylation | 1.33E-03 |
| 48 | GO:0009657: plastid organization | 1.50E-03 |
| 49 | GO:0010206: photosystem II repair | 1.69E-03 |
| 50 | GO:0000373: Group II intron splicing | 1.69E-03 |
| 51 | GO:0010205: photoinhibition | 1.89E-03 |
| 52 | GO:0009638: phototropism | 1.89E-03 |
| 53 | GO:0032259: methylation | 1.89E-03 |
| 54 | GO:0005982: starch metabolic process | 1.89E-03 |
| 55 | GO:0045036: protein targeting to chloroplast | 2.10E-03 |
| 56 | GO:0000038: very long-chain fatty acid metabolic process | 2.31E-03 |
| 57 | GO:0006415: translational termination | 2.31E-03 |
| 58 | GO:0006352: DNA-templated transcription, initiation | 2.31E-03 |
| 59 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.31E-03 |
| 60 | GO:0005986: sucrose biosynthetic process | 2.76E-03 |
| 61 | GO:0010588: cotyledon vascular tissue pattern formation | 2.76E-03 |
| 62 | GO:0006108: malate metabolic process | 2.76E-03 |
| 63 | GO:0019253: reductive pentose-phosphate cycle | 2.99E-03 |
| 64 | GO:0009409: response to cold | 3.31E-03 |
| 65 | GO:0009058: biosynthetic process | 3.43E-03 |
| 66 | GO:0010025: wax biosynthetic process | 3.48E-03 |
| 67 | GO:0019762: glucosinolate catabolic process | 3.48E-03 |
| 68 | GO:0016575: histone deacetylation | 3.99E-03 |
| 69 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.99E-03 |
| 70 | GO:0046686: response to cadmium ion | 4.09E-03 |
| 71 | GO:0061077: chaperone-mediated protein folding | 4.26E-03 |
| 72 | GO:0009269: response to desiccation | 4.26E-03 |
| 73 | GO:0007623: circadian rhythm | 4.48E-03 |
| 74 | GO:0070417: cellular response to cold | 5.38E-03 |
| 75 | GO:0042631: cellular response to water deprivation | 5.68E-03 |
| 76 | GO:0042335: cuticle development | 5.68E-03 |
| 77 | GO:0010118: stomatal movement | 5.68E-03 |
| 78 | GO:0006342: chromatin silencing | 5.98E-03 |
| 79 | GO:0009741: response to brassinosteroid | 5.98E-03 |
| 80 | GO:0006814: sodium ion transport | 6.28E-03 |
| 81 | GO:0009646: response to absence of light | 6.28E-03 |
| 82 | GO:0009791: post-embryonic development | 6.60E-03 |
| 83 | GO:0032502: developmental process | 7.24E-03 |
| 84 | GO:0030163: protein catabolic process | 7.57E-03 |
| 85 | GO:0009911: positive regulation of flower development | 8.93E-03 |
| 86 | GO:0009816: defense response to bacterium, incompatible interaction | 9.29E-03 |
| 87 | GO:0015979: photosynthesis | 9.79E-03 |
| 88 | GO:0045454: cell redox homeostasis | 1.03E-02 |
| 89 | GO:0000160: phosphorelay signal transduction system | 1.11E-02 |
| 90 | GO:0006508: proteolysis | 1.14E-02 |
| 91 | GO:0009631: cold acclimation | 1.19E-02 |
| 92 | GO:0009637: response to blue light | 1.27E-02 |
| 93 | GO:0006099: tricarboxylic acid cycle | 1.31E-02 |
| 94 | GO:0009644: response to high light intensity | 1.61E-02 |
| 95 | GO:0009965: leaf morphogenesis | 1.65E-02 |
| 96 | GO:0005975: carbohydrate metabolic process | 1.71E-02 |
| 97 | GO:0009809: lignin biosynthetic process | 1.88E-02 |
| 98 | GO:0006417: regulation of translation | 2.02E-02 |
| 99 | GO:0009626: plant-type hypersensitive response | 2.22E-02 |
| 100 | GO:0009620: response to fungus | 2.26E-02 |
| 101 | GO:0009611: response to wounding | 2.31E-02 |
| 102 | GO:0035556: intracellular signal transduction | 2.38E-02 |
| 103 | GO:0009624: response to nematode | 2.42E-02 |
| 104 | GO:0018105: peptidyl-serine phosphorylation | 2.47E-02 |
| 105 | GO:0006396: RNA processing | 2.47E-02 |
| 106 | GO:0009742: brassinosteroid mediated signaling pathway | 2.52E-02 |
| 107 | GO:0009793: embryo development ending in seed dormancy | 2.90E-02 |
| 108 | GO:0006457: protein folding | 2.92E-02 |
| 109 | GO:0006633: fatty acid biosynthetic process | 3.33E-02 |
| 110 | GO:0010150: leaf senescence | 3.57E-02 |
| 111 | GO:0009451: RNA modification | 3.63E-02 |
| 112 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.68E-02 |
| 113 | GO:0006470: protein dephosphorylation | 3.92E-02 |
| 114 | GO:0009617: response to bacterium | 4.04E-02 |
| 115 | GO:0042742: defense response to bacterium | 4.55E-02 |
| 116 | GO:0009651: response to salt stress | 4.58E-02 |
| 117 | GO:0009826: unidimensional cell growth | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 3 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 4 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 5 | GO:0046570: methylthioribulose 1-phosphate dehydratase activity | 0.00E+00 |
| 6 | GO:0043874: acireductone synthase activity | 0.00E+00 |
| 7 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 8 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 9 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 10 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 11 | GO:0004222: metalloendopeptidase activity | 6.01E-05 |
| 12 | GO:0050308: sugar-phosphatase activity | 6.74E-05 |
| 13 | GO:0070006: metalloaminopeptidase activity | 6.74E-05 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 6.74E-05 |
| 15 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 6.74E-05 |
| 16 | GO:0015245: fatty acid transporter activity | 6.74E-05 |
| 17 | GO:0030941: chloroplast targeting sequence binding | 6.74E-05 |
| 18 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 1.62E-04 |
| 19 | GO:0043169: cation binding | 2.75E-04 |
| 20 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.75E-04 |
| 21 | GO:0004557: alpha-galactosidase activity | 2.75E-04 |
| 22 | GO:0050307: sucrose-phosphate phosphatase activity | 2.75E-04 |
| 23 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 2.75E-04 |
| 24 | GO:0008864: formyltetrahydrofolate deformylase activity | 2.75E-04 |
| 25 | GO:0052692: raffinose alpha-galactosidase activity | 2.75E-04 |
| 26 | GO:0048487: beta-tubulin binding | 3.98E-04 |
| 27 | GO:0016149: translation release factor activity, codon specific | 3.98E-04 |
| 28 | GO:0009882: blue light photoreceptor activity | 3.98E-04 |
| 29 | GO:0008508: bile acid:sodium symporter activity | 3.98E-04 |
| 30 | GO:0008453: alanine-glyoxylate transaminase activity | 5.32E-04 |
| 31 | GO:0016987: sigma factor activity | 5.32E-04 |
| 32 | GO:0009011: starch synthase activity | 5.32E-04 |
| 33 | GO:0001053: plastid sigma factor activity | 5.32E-04 |
| 34 | GO:0051861: glycolipid binding | 5.32E-04 |
| 35 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.32E-04 |
| 36 | GO:0016615: malate dehydrogenase activity | 8.23E-04 |
| 37 | GO:2001070: starch binding | 8.23E-04 |
| 38 | GO:0008168: methyltransferase activity | 8.97E-04 |
| 39 | GO:0030060: L-malate dehydrogenase activity | 9.79E-04 |
| 40 | GO:0004849: uridine kinase activity | 9.79E-04 |
| 41 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 9.79E-04 |
| 42 | GO:0004033: aldo-keto reductase (NADP) activity | 1.32E-03 |
| 43 | GO:0052747: sinapyl alcohol dehydrogenase activity | 1.32E-03 |
| 44 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 1.50E-03 |
| 45 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 1.69E-03 |
| 46 | GO:0003747: translation release factor activity | 1.69E-03 |
| 47 | GO:0030234: enzyme regulator activity | 2.10E-03 |
| 48 | GO:0015386: potassium:proton antiporter activity | 2.31E-03 |
| 49 | GO:0004177: aminopeptidase activity | 2.31E-03 |
| 50 | GO:0044183: protein binding involved in protein folding | 2.31E-03 |
| 51 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 2.53E-03 |
| 52 | GO:0051082: unfolded protein binding | 2.61E-03 |
| 53 | GO:0031072: heat shock protein binding | 2.76E-03 |
| 54 | GO:0000155: phosphorelay sensor kinase activity | 2.76E-03 |
| 55 | GO:0008266: poly(U) RNA binding | 2.99E-03 |
| 56 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 3.48E-03 |
| 57 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 3.48E-03 |
| 58 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 3.48E-03 |
| 59 | GO:0031409: pigment binding | 3.48E-03 |
| 60 | GO:0004407: histone deacetylase activity | 3.73E-03 |
| 61 | GO:0015079: potassium ion transmembrane transporter activity | 3.99E-03 |
| 62 | GO:0004176: ATP-dependent peptidase activity | 4.26E-03 |
| 63 | GO:0003756: protein disulfide isomerase activity | 5.09E-03 |
| 64 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 5.68E-03 |
| 65 | GO:0010181: FMN binding | 6.28E-03 |
| 66 | GO:0000287: magnesium ion binding | 6.78E-03 |
| 67 | GO:0048038: quinone binding | 6.91E-03 |
| 68 | GO:0008237: metallopeptidase activity | 8.24E-03 |
| 69 | GO:0016168: chlorophyll binding | 9.29E-03 |
| 70 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 9.65E-03 |
| 71 | GO:0005524: ATP binding | 9.79E-03 |
| 72 | GO:0004683: calmodulin-dependent protein kinase activity | 1.00E-02 |
| 73 | GO:0042803: protein homodimerization activity | 1.08E-02 |
| 74 | GO:0050897: cobalt ion binding | 1.19E-02 |
| 75 | GO:0043621: protein self-association | 1.61E-02 |
| 76 | GO:0051287: NAD binding | 1.74E-02 |
| 77 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.88E-02 |
| 78 | GO:0045735: nutrient reservoir activity | 2.12E-02 |
| 79 | GO:0016787: hydrolase activity | 2.64E-02 |
| 80 | GO:0019843: rRNA binding | 2.84E-02 |
| 81 | GO:0042802: identical protein binding | 4.23E-02 |
| 82 | GO:0003723: RNA binding | 4.53E-02 |
| 83 | GO:0046982: protein heterodimerization activity | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0042579: microbody | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 5.43E-18 |
| 4 | GO:0009941: chloroplast envelope | 1.27E-10 |
| 5 | GO:0009570: chloroplast stroma | 1.23E-07 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 9.35E-06 |
| 7 | GO:0009534: chloroplast thylakoid | 1.64E-05 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.89E-05 |
| 9 | GO:0009782: photosystem I antenna complex | 6.74E-05 |
| 10 | GO:0031357: integral component of chloroplast inner membrane | 1.62E-04 |
| 11 | GO:0000792: heterochromatin | 1.62E-04 |
| 12 | GO:0009706: chloroplast inner membrane | 2.70E-04 |
| 13 | GO:0009897: external side of plasma membrane | 2.75E-04 |
| 14 | GO:0048046: apoplast | 1.04E-03 |
| 15 | GO:0031359: integral component of chloroplast outer membrane | 1.14E-03 |
| 16 | GO:0009501: amyloplast | 1.32E-03 |
| 17 | GO:0009508: plastid chromosome | 2.76E-03 |
| 18 | GO:0010287: plastoglobule | 3.09E-03 |
| 19 | GO:0030076: light-harvesting complex | 3.23E-03 |
| 20 | GO:0005777: peroxisome | 4.90E-03 |
| 21 | GO:0009579: thylakoid | 5.16E-03 |
| 22 | GO:0000790: nuclear chromatin | 5.38E-03 |
| 23 | GO:0009295: nucleoid | 8.24E-03 |
| 24 | GO:0010319: stromule | 8.24E-03 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 8.93E-03 |
| 26 | GO:0009707: chloroplast outer membrane | 1.08E-02 |
| 27 | GO:0000786: nucleosome | 1.23E-02 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 2.17E-02 |
| 29 | GO:0005759: mitochondrial matrix | 3.33E-02 |